Wall clock time and date at job start Fri Apr 10 2020 18:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46731 * 2 1 4 4 C 1.52994 * 109.47368 * 240.00275 * 2 1 3 5 5 N 1.46501 * 109.47260 * 64.99377 * 4 2 1 6 6 C 1.34781 * 120.00018 * 179.97438 * 5 4 2 7 7 O 1.21286 * 120.00010 * 0.02562 * 6 5 4 8 8 C 1.50701 * 120.00006 * 179.97438 * 6 5 4 9 9 H 1.08999 * 109.46643 * 40.00876 * 8 6 5 10 10 N 1.46903 * 109.46818 * 160.00308 * 8 6 5 11 11 C 1.52995 * 109.47446 * 280.00262 * 8 6 5 12 12 C 1.52998 * 109.47385 * 175.00132 * 11 8 6 13 13 C 1.50693 * 109.47345 * 180.02562 * 12 11 8 14 14 H 1.07999 * 120.00023 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00125 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00079 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 120.00036 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.46953 * 89.99901 * 17 15 13 19 19 H 1.48501 * 109.47300 * 210.00508 * 17 15 13 20 20 H 1.48503 * 109.46803 * 330.00197 * 17 15 13 21 21 C 1.52997 * 109.47242 * 119.99706 * 2 1 3 22 22 N 1.46899 * 109.47254 * 295.00236 * 21 2 1 23 23 C 1.47013 * 111.00046 * 293.63666 * 22 21 2 24 24 C 1.53099 * 109.25643 * 177.60657 * 23 22 21 25 25 O 1.43014 * 109.25885 * 56.84790 * 24 23 22 26 26 C 1.43018 * 113.73978 * 301.33101 * 25 24 23 27 27 C 1.47011 * 111.00014 * 169.99684 * 22 21 2 28 28 H 1.08996 * 109.47271 * 60.00619 * 1 2 3 29 29 H 1.09008 * 109.46731 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47430 * 299.99947 * 1 2 3 31 31 H 1.09001 * 109.47698 * 184.99641 * 4 2 1 32 32 H 1.09009 * 109.47010 * 304.99646 * 4 2 1 33 33 H 0.96994 * 120.00443 * 0.02562 * 5 4 2 34 34 H 1.00903 * 110.99804 * 296.04567 * 10 8 6 35 35 H 1.00898 * 110.99920 * 60.00140 * 10 8 6 36 36 H 1.09000 * 109.47155 * 295.00055 * 11 8 6 37 37 H 1.09004 * 109.46939 * 54.99776 * 11 8 6 38 38 H 1.09000 * 109.46911 * 300.00073 * 12 11 8 39 39 H 1.08997 * 109.47088 * 59.99722 * 12 11 8 40 40 H 0.97000 * 119.99618 * 180.02562 * 16 15 13 41 41 H 1.09002 * 109.47153 * 175.00232 * 21 2 1 42 42 H 1.09001 * 109.46832 * 55.00423 * 21 2 1 43 43 H 1.08995 * 109.50757 * 297.54095 * 23 22 21 44 44 H 1.09000 * 109.50677 * 57.67521 * 23 22 21 45 45 H 1.08994 * 109.50770 * 296.91494 * 24 23 22 46 46 H 1.09003 * 109.54264 * 176.80054 * 24 23 22 47 47 H 1.09001 * 109.50030 * 298.73460 * 26 25 24 48 48 H 1.09002 * 109.54311 * 178.62809 * 26 25 24 49 49 H 1.08999 * 109.50799 * 302.32969 * 27 22 21 50 50 H 1.09001 * 109.50741 * 62.46009 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7211 -1.2492 5 7 1.6524 0.0354 -2.4423 6 6 1.9965 -0.4130 -3.6659 7 8 2.6266 -1.4431 -3.7792 8 6 1.5972 0.3649 -4.8933 9 1 1.7128 1.4316 -4.7008 10 7 2.4547 -0.0250 -6.0205 11 6 0.1368 0.0636 -5.2355 12 6 -0.3057 0.9458 -6.4046 13 6 -1.7443 0.6495 -6.7412 14 1 -2.2886 -0.0940 -6.1779 15 6 -2.3655 1.3268 -7.7690 16 7 -3.6212 1.0685 -8.0625 17 14 -1.4239 2.6123 -8.7439 18 1 -0.7595 1.9654 -9.9037 19 1 -2.3655 3.6529 -9.2297 20 1 -0.3982 3.2407 -7.8730 21 6 2.0400 -0.7212 1.2492 22 7 1.6514 0.0375 2.4456 23 6 2.3403 1.3354 2.4933 24 6 1.8625 2.1158 3.7207 25 8 2.0959 1.3354 4.8962 26 6 1.4392 0.0650 4.8837 27 6 1.9126 -0.7362 3.6680 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 3.1264 -0.7993 -1.2056 32 1 1.6055 -1.7198 -1.2951 33 1 1.1488 0.8594 -2.3518 34 1 3.4170 0.2230 -5.8455 35 1 2.3655 -1.0103 -6.2188 36 1 0.0379 -0.9855 -5.5142 37 1 -0.4897 0.2695 -4.3675 38 1 -0.2068 1.9949 -6.1259 39 1 0.3208 0.7399 -7.2725 40 1 -4.0580 1.5448 -8.7858 41 1 3.1264 -0.7993 1.2056 42 1 1.6054 -1.7197 1.2951 43 1 3.4162 1.1741 2.5607 44 1 2.1123 1.9018 1.5904 45 1 0.7966 2.3237 3.6276 46 1 2.4116 3.0547 3.7923 47 1 0.3610 0.2133 4.8243 48 1 1.6820 -0.4800 5.7959 49 1 1.3726 -1.6819 3.6226 50 1 2.9817 -0.9307 3.7542 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424157489.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:45 Heat of formation + Delta-G solvation = -94.641297 kcal Electronic energy + Delta-G solvation = -26387.920718 eV Core-core repulsion = 22642.336926 eV Total energy + Delta-G solvation = -3745.583792 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.21748 -39.77704 -37.50625 -35.55789 -35.12498 -32.78191 -32.67900 -31.61725 -30.49035 -28.38455 -27.52222 -26.20859 -24.65949 -24.49480 -22.99816 -21.05422 -20.62593 -20.28876 -19.72197 -17.35929 -17.11407 -16.65578 -16.53957 -16.15024 -15.88934 -15.57934 -15.49260 -15.22031 -15.07571 -14.60937 -14.15543 -14.11720 -13.82711 -13.46523 -13.37258 -12.97799 -12.77808 -12.59529 -12.45523 -12.32996 -11.97035 -11.82487 -11.70802 -11.42317 -11.32003 -11.04484 -11.00283 -10.89346 -10.85020 -10.37297 -10.11213 -10.00585 -9.71440 -9.59413 -9.12402 -9.10084 -8.85657 -8.51331 -8.39453 -5.99271 -3.96803 2.71002 3.05374 3.36549 3.37560 3.43989 3.47393 3.49269 4.30853 4.42437 4.47108 4.51347 4.59570 4.60386 4.69668 4.78189 4.79823 4.85992 5.00141 5.03196 5.11266 5.17266 5.22076 5.30892 5.34546 5.35003 5.39418 5.39913 5.50963 5.55276 5.62219 5.68690 5.78264 5.92791 6.12805 6.28790 6.37975 6.46386 6.47427 6.49500 6.68707 6.87724 7.24626 7.38467 7.50328 7.58165 7.66142 7.86599 8.25205 8.58288 9.05529 9.63741 11.14199 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.019002 B = 0.002266 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.185335 B =12352.433834 C =13049.641521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.100 4.100 3 H 0.077 0.923 4 C 0.123 3.877 5 N -0.728 5.728 6 C 0.483 3.517 7 O -0.554 6.554 8 C 0.075 3.925 9 H 0.097 0.903 10 N -0.811 5.811 11 C -0.087 4.087 12 C -0.004 4.004 13 C -0.521 4.521 14 H 0.069 0.931 15 C 0.065 3.935 16 N -0.906 5.906 17 Si 0.883 3.117 18 H -0.277 1.277 19 H -0.291 1.291 20 H -0.265 1.265 21 C 0.063 3.937 22 N -0.532 5.532 23 C 0.013 3.987 24 C 0.063 3.937 25 O -0.387 6.387 26 C 0.064 3.936 27 C 0.017 3.983 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.403 0.597 34 H 0.335 0.665 35 H 0.350 0.650 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.012 0.988 39 H 0.029 0.971 40 H 0.262 0.738 41 H 0.038 0.962 42 H 0.081 0.919 43 H 0.042 0.958 44 H 0.090 0.910 45 H 0.061 0.939 46 H 0.098 0.902 47 H 0.061 0.939 48 H 0.097 0.903 49 H 0.087 0.913 50 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.553 -0.003 25.568 28.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.119 4.119 3 H 0.095 0.905 4 C -0.002 4.002 5 N -0.381 5.381 6 C 0.269 3.731 7 O -0.432 6.432 8 C -0.041 4.041 9 H 0.115 0.885 10 N -0.339 5.339 11 C -0.125 4.125 12 C -0.042 4.042 13 C -0.559 4.559 14 H 0.087 0.913 15 C -0.136 4.136 16 N -0.546 5.546 17 Si 0.711 3.289 18 H -0.203 1.203 19 H -0.217 1.217 20 H -0.189 1.189 21 C -0.065 4.065 22 N -0.257 5.257 23 C -0.115 4.115 24 C -0.014 4.014 25 O -0.306 6.306 26 C -0.013 4.013 27 C -0.111 4.111 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.238 0.762 34 H 0.146 0.854 35 H 0.164 0.836 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.031 0.969 39 H 0.047 0.953 40 H 0.072 0.928 41 H 0.056 0.944 42 H 0.099 0.901 43 H 0.061 0.939 44 H 0.108 0.892 45 H 0.079 0.921 46 H 0.116 0.884 47 H 0.079 0.921 48 H 0.115 0.885 49 H 0.105 0.895 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 13.032 -0.048 25.050 28.237 hybrid contribution 1.327 0.079 0.005 1.329 sum 14.359 0.031 25.056 28.879 Atomic orbital electron populations 1.21754 0.93391 1.02412 1.02250 1.21381 0.97822 0.99901 0.92757 0.90478 1.21291 0.99494 0.95692 0.83690 1.46129 1.58178 1.28018 1.05754 1.22620 0.78291 0.86300 0.85892 1.90653 1.40769 1.24793 1.86938 1.21858 0.97482 0.99030 0.85733 0.88488 1.59034 1.11464 1.25074 1.38353 1.21462 0.88837 1.01626 1.00589 1.19481 0.96693 0.94243 0.93750 1.21177 0.95173 1.22666 1.16858 0.91314 1.25025 0.94742 0.96887 0.96930 1.69928 1.11308 1.42665 1.30664 0.86726 0.79841 0.81667 0.80702 1.20302 1.21729 1.18908 1.22078 0.98151 0.97426 0.88862 1.62154 1.57783 1.03852 1.01947 1.22867 0.96805 0.91696 1.00101 1.22676 1.01135 0.93833 0.83721 1.87990 1.73047 1.29479 1.40066 1.22664 0.97127 0.84131 0.97418 1.22788 1.00068 0.97745 0.90471 0.92612 0.92636 0.91322 0.92046 0.91483 0.76231 0.85369 0.83607 0.92250 0.92182 0.96931 0.95252 0.92850 0.94409 0.90077 0.93946 0.89167 0.92074 0.88432 0.92110 0.88468 0.89454 0.93950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 8.95 37.16 0.33 -0.85 16 2 C -0.10 -0.76 2.35 -90.62 -0.21 -0.97 16 3 H 0.08 0.56 6.30 -51.92 -0.33 0.23 16 4 C 0.12 1.24 5.06 -4.04 -0.02 1.22 16 5 N -0.73 -8.35 5.28 -60.29 -0.32 -8.67 16 6 C 0.48 7.17 7.07 -10.98 -0.08 7.10 16 7 O -0.55 -9.86 16.25 5.55 0.09 -9.77 16 8 C 0.07 1.16 3.15 -68.86 -0.22 0.94 16 9 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16 10 N -0.81 -12.65 8.44 -5.65 -0.05 -12.70 16 11 C -0.09 -1.66 4.78 -26.73 -0.13 -1.79 16 12 C 0.00 -0.10 3.93 -27.89 -0.11 -0.21 16 13 C -0.52 -14.81 9.66 -34.44 -0.33 -15.14 16 14 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 15 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 16 N -0.91 -28.14 13.96 55.43 0.77 -27.36 16 17 Si 0.88 22.00 27.47 -169.99 -4.67 17.33 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 20 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 21 C 0.06 0.45 4.35 -3.83 -0.02 0.43 16 22 N -0.53 -3.80 4.18 -234.32 -0.98 -4.78 16 23 C 0.01 0.09 5.44 -3.71 -0.02 0.07 16 24 C 0.06 0.43 7.01 37.21 0.26 0.69 16 25 O -0.39 -3.30 10.83 -35.23 -0.38 -3.69 16 26 C 0.06 0.41 7.01 37.21 0.26 0.67 16 27 C 0.02 0.11 5.64 -3.71 -0.02 0.09 16 28 H 0.05 0.50 7.18 -51.93 -0.37 0.13 16 29 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 30 H 0.07 0.58 7.75 -51.93 -0.40 0.17 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 33 H 0.40 3.91 7.66 -40.82 -0.31 3.60 16 34 H 0.33 4.48 9.06 -39.29 -0.36 4.13 16 35 H 0.35 5.62 8.58 -39.29 -0.34 5.28 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 39 H 0.03 0.71 7.18 -51.93 -0.37 0.33 16 40 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 41 H 0.04 0.28 8.12 -51.93 -0.42 -0.15 16 42 H 0.08 0.57 8.04 -51.93 -0.42 0.15 16 43 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.09 0.55 6.29 -51.93 -0.33 0.23 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 48 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 49 H 0.09 0.47 8.09 -51.93 -0.42 0.05 16 50 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 392.49 15.07 5.91 5.91 Total: -1.00 -33.81 392.49 -9.12 -42.93 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -9.10 Total: 6.75 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -0.40 Total: -5.95 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: -0.57 Total: -53.51 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -0.29 Total: -13.46 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.81 -9.12 -42.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424157489.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.713 kcal (2) G-P(sol) polarization free energy of solvation -33.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds