Wall clock time and date at job start Fri Apr 10 2020 18:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46731 * 2 1 4 4 C 1.52994 * 109.47368 * 240.00275 * 2 1 3 5 5 N 1.46501 * 109.47260 * 64.99377 * 4 2 1 6 6 C 1.34781 * 120.00018 * 179.97438 * 5 4 2 7 7 O 1.21286 * 120.00010 * 0.02562 * 6 5 4 8 8 C 1.50701 * 120.00006 * 179.97438 * 6 5 4 9 9 H 1.08999 * 109.46643 * 40.00876 * 8 6 5 10 10 N 1.46903 * 109.46818 * 160.00308 * 8 6 5 11 11 C 1.52995 * 109.47446 * 280.00262 * 8 6 5 12 12 C 1.52998 * 109.47385 * 175.00132 * 11 8 6 13 13 C 1.50693 * 109.47345 * 180.02562 * 12 11 8 14 14 H 1.07999 * 120.00023 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00125 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00079 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 120.00036 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.46953 * 89.99901 * 17 15 13 19 19 H 1.48501 * 109.47300 * 210.00508 * 17 15 13 20 20 H 1.48503 * 109.46803 * 330.00197 * 17 15 13 21 21 C 1.52997 * 109.47242 * 119.99706 * 2 1 3 22 22 N 1.46899 * 109.47254 * 295.00236 * 21 2 1 23 23 C 1.47013 * 111.00046 * 293.63666 * 22 21 2 24 24 C 1.53099 * 109.25643 * 177.60657 * 23 22 21 25 25 O 1.43014 * 109.25885 * 56.84790 * 24 23 22 26 26 C 1.43018 * 113.73978 * 301.33101 * 25 24 23 27 27 C 1.47011 * 111.00014 * 169.99684 * 22 21 2 28 28 H 1.08996 * 109.47271 * 60.00619 * 1 2 3 29 29 H 1.09008 * 109.46731 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47430 * 299.99947 * 1 2 3 31 31 H 1.09001 * 109.47698 * 184.99641 * 4 2 1 32 32 H 1.09009 * 109.47010 * 304.99646 * 4 2 1 33 33 H 0.96994 * 120.00443 * 0.02562 * 5 4 2 34 34 H 1.00903 * 110.99804 * 296.04567 * 10 8 6 35 35 H 1.00898 * 110.99920 * 60.00140 * 10 8 6 36 36 H 1.09000 * 109.47155 * 295.00055 * 11 8 6 37 37 H 1.09004 * 109.46939 * 54.99776 * 11 8 6 38 38 H 1.09000 * 109.46911 * 300.00073 * 12 11 8 39 39 H 1.08997 * 109.47088 * 59.99722 * 12 11 8 40 40 H 0.97000 * 119.99618 * 180.02562 * 16 15 13 41 41 H 1.09002 * 109.47153 * 175.00232 * 21 2 1 42 42 H 1.09001 * 109.46832 * 55.00423 * 21 2 1 43 43 H 1.08995 * 109.50757 * 297.54095 * 23 22 21 44 44 H 1.09000 * 109.50677 * 57.67521 * 23 22 21 45 45 H 1.08994 * 109.50770 * 296.91494 * 24 23 22 46 46 H 1.09003 * 109.54264 * 176.80054 * 24 23 22 47 47 H 1.09001 * 109.50030 * 298.73460 * 26 25 24 48 48 H 1.09002 * 109.54311 * 178.62809 * 26 25 24 49 49 H 1.08999 * 109.50799 * 302.32969 * 27 22 21 50 50 H 1.09001 * 109.50741 * 62.46009 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7211 -1.2492 5 7 1.6524 0.0354 -2.4423 6 6 1.9965 -0.4130 -3.6659 7 8 2.6266 -1.4431 -3.7792 8 6 1.5972 0.3649 -4.8933 9 1 1.7128 1.4316 -4.7008 10 7 2.4547 -0.0250 -6.0205 11 6 0.1368 0.0636 -5.2355 12 6 -0.3057 0.9458 -6.4046 13 6 -1.7443 0.6495 -6.7412 14 1 -2.2886 -0.0940 -6.1779 15 6 -2.3655 1.3268 -7.7690 16 7 -3.6212 1.0685 -8.0625 17 14 -1.4239 2.6123 -8.7439 18 1 -0.7595 1.9654 -9.9037 19 1 -2.3655 3.6529 -9.2297 20 1 -0.3982 3.2407 -7.8730 21 6 2.0400 -0.7212 1.2492 22 7 1.6514 0.0375 2.4456 23 6 2.3403 1.3354 2.4933 24 6 1.8625 2.1158 3.7207 25 8 2.0959 1.3354 4.8962 26 6 1.4392 0.0650 4.8837 27 6 1.9126 -0.7362 3.6680 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 3.1264 -0.7993 -1.2056 32 1 1.6055 -1.7198 -1.2951 33 1 1.1488 0.8594 -2.3518 34 1 3.4170 0.2230 -5.8455 35 1 2.3655 -1.0103 -6.2188 36 1 0.0379 -0.9855 -5.5142 37 1 -0.4897 0.2695 -4.3675 38 1 -0.2068 1.9949 -6.1259 39 1 0.3208 0.7399 -7.2725 40 1 -4.0580 1.5448 -8.7858 41 1 3.1264 -0.7993 1.2056 42 1 1.6054 -1.7197 1.2951 43 1 3.4162 1.1741 2.5607 44 1 2.1123 1.9018 1.5904 45 1 0.7966 2.3237 3.6276 46 1 2.4116 3.0547 3.7923 47 1 0.3610 0.2133 4.8243 48 1 1.6820 -0.4800 5.7959 49 1 1.3726 -1.6819 3.6226 50 1 2.9817 -0.9307 3.7542 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424157489.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:45 Heat of formation + Delta-G solvation = -121.724289 kcal Electronic energy + Delta-G solvation = -26389.095124 eV Core-core repulsion = 22642.336926 eV Total energy + Delta-G solvation = -3746.758198 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.12837 -40.57071 -38.24069 -36.85015 -36.10283 -34.77185 -33.53335 -32.27377 -32.11965 -29.08687 -28.66438 -27.43904 -25.61936 -25.03310 -24.28280 -22.11917 -21.69544 -21.32216 -20.71348 -18.96213 -18.18978 -17.88313 -17.17442 -17.09136 -16.87629 -16.44109 -16.21711 -16.05076 -15.93612 -15.84710 -15.52955 -15.03587 -14.93491 -14.70870 -14.53166 -14.11111 -13.97673 -13.61315 -13.49448 -13.46391 -13.01793 -12.81325 -12.53938 -12.50572 -12.32661 -12.10701 -12.00425 -11.93280 -11.78497 -11.64066 -11.60131 -11.44081 -11.27229 -11.11994 -10.70234 -10.66009 -10.13515 -9.66104 -9.40328 -8.23897 -6.27018 1.42459 1.43618 1.51761 1.56362 2.14990 2.42309 2.74255 2.96762 3.12742 3.56977 3.71239 3.77877 3.88746 3.93837 3.96872 4.04750 4.09313 4.20033 4.26479 4.28293 4.33211 4.40352 4.51031 4.62379 4.68124 4.72222 4.73766 4.77637 4.82349 4.85232 4.88001 4.91577 5.02564 5.08972 5.15847 5.22698 5.39281 5.46790 5.52153 5.66930 5.74067 5.92758 5.93810 6.07757 6.18094 6.33742 6.45002 6.54160 6.81713 7.15435 7.37407 8.92949 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.019002 B = 0.002266 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.185335 B =12352.433834 C =13049.641521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.085 4.085 3 H 0.089 0.911 4 C 0.125 3.875 5 N -0.713 5.713 6 C 0.486 3.514 7 O -0.585 6.585 8 C 0.084 3.916 9 H 0.121 0.879 10 N -0.819 5.819 11 C -0.079 4.079 12 C 0.002 3.998 13 C -0.530 4.530 14 H 0.028 0.972 15 C 0.001 3.999 16 N -0.955 5.955 17 Si 0.954 3.046 18 H -0.273 1.273 19 H -0.287 1.287 20 H -0.240 1.240 21 C 0.066 3.934 22 N -0.538 5.538 23 C 0.015 3.985 24 C 0.061 3.939 25 O -0.408 6.408 26 C 0.062 3.938 27 C 0.018 3.982 28 H 0.050 0.950 29 H 0.046 0.954 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.414 0.586 34 H 0.348 0.652 35 H 0.345 0.655 36 H 0.038 0.962 37 H 0.066 0.934 38 H 0.025 0.975 39 H 0.027 0.973 40 H 0.264 0.736 41 H 0.038 0.962 42 H 0.081 0.919 43 H 0.036 0.964 44 H 0.098 0.902 45 H 0.061 0.939 46 H 0.110 0.890 47 H 0.060 0.940 48 H 0.112 0.888 49 H 0.097 0.903 50 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.285 1.600 26.348 30.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.104 4.104 3 H 0.107 0.893 4 C 0.001 3.999 5 N -0.366 5.366 6 C 0.271 3.729 7 O -0.466 6.466 8 C -0.032 4.032 9 H 0.139 0.861 10 N -0.348 5.348 11 C -0.117 4.117 12 C -0.035 4.035 13 C -0.568 4.568 14 H 0.046 0.954 15 C -0.195 4.195 16 N -0.596 5.596 17 Si 0.778 3.222 18 H -0.199 1.199 19 H -0.214 1.214 20 H -0.163 1.163 21 C -0.062 4.062 22 N -0.263 5.263 23 C -0.113 4.113 24 C -0.016 4.016 25 O -0.327 6.327 26 C -0.015 4.015 27 C -0.110 4.110 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.251 0.749 34 H 0.162 0.838 35 H 0.159 0.841 36 H 0.057 0.943 37 H 0.085 0.915 38 H 0.043 0.957 39 H 0.045 0.955 40 H 0.073 0.927 41 H 0.056 0.944 42 H 0.100 0.900 43 H 0.055 0.945 44 H 0.116 0.884 45 H 0.079 0.921 46 H 0.128 0.872 47 H 0.079 0.921 48 H 0.129 0.871 49 H 0.115 0.885 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 14.772 1.576 25.876 29.837 hybrid contribution 0.712 -0.495 -0.162 0.882 sum 15.484 1.081 25.714 30.035 Atomic orbital electron populations 1.21711 0.93813 1.01821 1.02081 1.21253 0.97172 1.00213 0.91808 0.89330 1.21343 0.99453 0.95229 0.83915 1.46040 1.57038 1.28200 1.05291 1.22393 0.78197 0.85694 0.86596 1.90647 1.42476 1.26041 1.87422 1.21676 0.94925 1.00422 0.86155 0.86124 1.59023 1.12526 1.24817 1.38447 1.21254 0.91731 0.99473 0.99261 1.19369 0.93272 0.95612 0.95249 1.21564 0.97572 1.21405 1.16276 0.95379 1.26029 0.95659 0.99535 0.98301 1.70087 1.13375 1.44434 1.31743 0.85597 0.78784 0.78622 0.79202 1.19853 1.21353 1.16329 1.22016 0.98129 0.97387 0.88654 1.62167 1.57911 1.04121 1.02106 1.22877 0.96383 0.91597 1.00467 1.22780 1.01346 0.94181 0.83252 1.87961 1.73490 1.30338 1.40936 1.22780 0.96983 0.83637 0.98107 1.22811 0.99906 0.98089 0.90181 0.93132 0.93465 0.91067 0.92059 0.92773 0.74920 0.83808 0.84122 0.94296 0.91514 0.95694 0.95505 0.92687 0.94354 0.90042 0.94529 0.88374 0.92108 0.87211 0.92144 0.87051 0.88506 0.94431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.95 71.98 0.64 -1.45 16 2 C -0.09 -1.14 2.35 -10.80 -0.03 -1.17 16 3 H 0.09 1.03 6.30 -2.38 -0.02 1.02 16 4 C 0.13 2.32 5.06 86.38 0.44 2.76 16 5 N -0.71 -14.95 5.28 -463.04 -2.45 -17.40 16 6 C 0.49 13.61 7.07 87.66 0.62 14.23 16 7 O -0.59 -20.26 16.25 -3.05 -0.05 -20.31 16 8 C 0.08 2.42 3.15 44.17 0.14 2.56 16 9 H 0.12 2.95 8.14 -2.39 -0.02 2.93 16 10 N -0.82 -23.98 8.44 -171.80 -1.45 -25.43 16 11 C -0.08 -2.94 4.78 30.59 0.15 -2.79 16 12 C 0.00 0.11 3.93 29.85 0.12 0.23 16 13 C -0.53 -30.50 9.66 25.60 0.25 -30.25 16 14 H 0.03 1.78 7.99 -2.91 -0.02 1.76 16 15 C 0.00 0.05 5.47 84.65 0.46 0.51 16 16 N -0.96 -60.47 13.96 21.45 0.30 -60.17 16 17 Si 0.95 44.64 27.47 68.60 1.88 46.52 16 18 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 19 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 20 H -0.24 -10.21 6.54 99.48 0.65 -9.56 16 21 C 0.07 0.84 4.35 86.30 0.38 1.22 16 22 N -0.54 -6.84 4.18 -895.24 -3.74 -10.58 16 23 C 0.01 0.17 5.44 86.31 0.47 0.64 16 24 C 0.06 0.74 7.01 72.02 0.50 1.24 16 25 O -0.41 -6.50 10.83 -148.98 -1.61 -8.12 16 26 C 0.06 0.72 7.01 72.01 0.50 1.22 16 27 C 0.02 0.21 5.64 86.31 0.49 0.70 16 28 H 0.05 0.82 7.18 -2.39 -0.02 0.81 16 29 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 30 H 0.07 1.07 7.75 -2.39 -0.02 1.06 16 31 H 0.06 1.18 8.14 -2.39 -0.02 1.17 16 32 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 33 H 0.41 6.94 7.66 -92.71 -0.71 6.23 16 34 H 0.35 8.53 9.06 -89.69 -0.81 7.72 16 35 H 0.35 10.75 8.58 -89.70 -0.77 9.98 16 36 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 38 H 0.02 1.08 7.20 -2.39 -0.02 1.06 16 39 H 0.03 1.24 7.18 -2.39 -0.02 1.22 16 40 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 41 H 0.04 0.49 8.12 -2.39 -0.02 0.48 16 42 H 0.08 1.04 8.04 -2.39 -0.02 1.02 16 43 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 44 H 0.10 0.98 6.29 -2.39 -0.02 0.96 16 45 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 49 H 0.10 0.91 8.09 -2.39 -0.02 0.89 16 50 H 0.04 0.47 8.14 -2.39 -0.02 0.45 16 Total: -1.00 -73.13 392.49 -3.40 -76.53 By element: Atomic # 1 Polarization: 30.72 SS G_CDS: -1.41 Total: 29.31 kcal Atomic # 6 Polarization: -15.49 SS G_CDS: 5.13 Total: -10.35 kcal Atomic # 7 Polarization: -106.24 SS G_CDS: -7.34 Total: -113.58 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -1.66 Total: -28.43 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.88 Total: 46.52 kcal Total: -73.13 -3.40 -76.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424157489.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.191 kcal (2) G-P(sol) polarization free energy of solvation -73.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds