Wall clock time and date at job start Fri Apr 10 2020 18:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99948 * 2 1 4 4 C 1.53006 * 109.47036 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46687 * 65.00210 * 4 3 2 6 6 C 1.45647 * 117.70675 * 90.00395 * 5 4 3 7 7 C 1.52981 * 110.77638 * 158.09755 * 6 5 4 8 8 N 1.47265 * 108.19164 * 46.72487 * 7 6 5 9 9 C 1.34774 * 121.35519 * 118.51437 * 8 7 6 10 10 O 1.21278 * 120.00205 * 0.02562 * 9 8 7 11 11 C 1.50704 * 119.99773 * 179.97438 * 9 8 7 12 12 H 1.09000 * 109.47537 * 320.00646 * 11 9 8 13 13 N 1.46905 * 109.46935 * 200.00275 * 11 9 8 14 14 C 1.53005 * 109.46821 * 80.00615 * 11 9 8 15 15 C 1.53001 * 109.46882 * 184.99641 * 14 11 9 16 16 C 1.50701 * 109.46970 * 179.97438 * 15 14 11 17 17 H 1.08001 * 119.99688 * 0.02562 * 16 15 14 18 18 C 1.37871 * 119.99978 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00053 * 180.02562 * 18 16 15 20 20 Si 1.86793 * 120.00188 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.47214 * 89.99682 * 20 18 16 22 22 H 1.48502 * 109.47613 * 209.99799 * 20 18 16 23 23 H 1.48503 * 109.47320 * 330.00334 * 20 18 16 24 24 C 1.47053 * 117.29019 * 298.49868 * 8 7 6 25 25 C 1.33381 * 117.70841 * 269.73872 * 5 4 3 26 26 O 1.21286 * 118.48500 * 4.29854 * 25 5 4 27 27 H 1.08995 * 109.47392 * 299.99575 * 1 2 3 28 28 H 1.09003 * 109.47182 * 59.99587 * 1 2 3 29 29 H 1.08999 * 109.47444 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46798 * 60.00190 * 3 2 1 31 31 H 1.08993 * 109.47318 * 299.99656 * 3 2 1 32 32 H 1.08992 * 109.47046 * 185.00128 * 4 3 2 33 33 H 1.08997 * 109.47395 * 305.00669 * 4 3 2 34 34 H 1.09007 * 109.21530 * 278.43459 * 6 5 4 35 35 H 1.08999 * 109.21882 * 37.76039 * 6 5 4 36 36 H 1.09008 * 109.72131 * 166.40150 * 7 6 5 37 37 H 1.09006 * 109.71993 * 287.00385 * 7 6 5 38 38 H 1.00903 * 111.00183 * 300.00288 * 13 11 9 39 39 H 1.00894 * 110.99658 * 63.95999 * 13 11 9 40 40 H 1.08997 * 109.47180 * 304.99641 * 14 11 9 41 41 H 1.09001 * 109.46599 * 64.99947 * 14 11 9 42 42 H 1.08997 * 109.47213 * 299.99980 * 15 14 11 43 43 H 1.08999 * 109.46698 * 60.00190 * 15 14 11 44 44 H 0.97000 * 120.00175 * 180.02562 * 19 18 16 45 45 H 1.09000 * 109.56949 * 162.55775 * 24 8 7 46 46 H 1.09001 * 109.56550 * 282.79736 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.2731 1.4420 -2.3745 7 6 5.2004 0.7491 -3.3747 8 7 4.6808 -0.6067 -3.6204 9 6 4.2872 -0.9948 -4.8496 10 8 4.3577 -0.2216 -5.7812 11 6 3.7607 -2.3901 -5.0666 12 1 4.3527 -3.0965 -4.4847 13 7 3.8526 -2.7319 -6.4924 14 6 2.2993 -2.4590 -4.6188 15 6 1.8018 -3.9022 -4.7220 16 6 0.3626 -3.9703 -4.2803 17 1 -0.1465 -3.0737 -3.9586 18 6 -0.3042 -5.1770 -4.2869 19 7 -1.5604 -5.2363 -3.9019 20 14 0.5764 -6.7277 -4.8425 21 1 1.2244 -7.3749 -3.6735 22 1 -0.4046 -7.6649 -5.4463 23 1 1.6099 -6.3764 -5.8494 24 6 4.6090 -1.5200 -2.4701 25 6 4.0838 -0.7652 -1.2799 26 8 3.7375 -1.3949 -0.3029 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6886 1.8463 0.8900 31 1 1.6887 1.8463 -0.8899 32 1 3.9784 2.1764 0.0902 33 1 3.8508 0.5684 0.8426 34 1 3.3427 1.7112 -2.8747 35 1 4.7557 2.3468 -2.0051 36 1 5.2193 1.3107 -4.3088 37 1 6.2074 0.6886 -2.9617 38 1 3.3117 -2.0910 -7.0535 39 1 4.8141 -2.7564 -6.7970 40 1 2.2194 -2.1201 -3.5859 41 1 1.6925 -1.8189 -5.2593 42 1 1.8817 -4.2411 -5.7548 43 1 2.4087 -4.5423 -4.0815 44 1 -2.0294 -6.0853 -3.9062 45 1 3.9415 -2.3495 -2.7035 46 1 5.6043 -1.9042 -2.2464 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424170261.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:15 Heat of formation + Delta-G solvation = -101.247205 kcal Electronic energy + Delta-G solvation = -27944.831708 eV Core-core repulsion = 24063.128368 eV Total energy + Delta-G solvation = -3881.703340 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.98457 -39.53648 -37.64785 -36.57449 -35.46883 -35.03959 -32.74708 -31.04858 -30.48666 -29.81867 -27.56583 -26.67054 -26.02723 -24.49678 -23.09803 -22.56451 -20.35136 -19.95362 -18.40230 -17.66439 -17.50665 -16.62827 -16.58412 -16.25543 -16.19985 -15.57409 -15.55851 -15.15370 -15.05302 -14.40921 -14.19416 -14.10622 -13.81870 -13.43081 -13.08769 -12.76609 -12.69745 -12.58703 -12.52225 -12.36779 -12.01394 -11.84154 -11.65693 -11.53035 -11.06525 -11.00523 -10.85698 -10.55353 -10.09743 -9.90513 -9.75260 -9.58017 -9.56754 -9.08163 -8.94662 -8.77641 -8.50386 -8.40240 -5.94981 -3.92229 2.48297 2.54426 2.62839 2.96453 3.40415 3.47326 3.54796 3.82519 4.26025 4.35515 4.55509 4.55900 4.78234 4.82167 4.89448 4.96169 5.01117 5.10825 5.15179 5.18841 5.25415 5.33822 5.40076 5.41048 5.45396 5.51092 5.54739 5.62158 5.72597 5.97290 6.00787 6.25533 6.30043 6.45963 6.86396 7.05008 7.24911 7.28828 7.31438 7.38207 7.59457 7.63376 7.89777 8.01862 8.13463 8.62184 9.09581 9.68045 11.18612 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.011072 B = 0.005060 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.206525 B = 5531.783144 C = 7282.757237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.365 6.365 3 C 0.043 3.957 4 C 0.111 3.889 5 N -0.603 5.603 6 C 0.101 3.899 7 C 0.095 3.905 8 N -0.617 5.617 9 C 0.494 3.506 10 O -0.546 6.546 11 C 0.073 3.927 12 H 0.100 0.900 13 N -0.809 5.809 14 C -0.089 4.089 15 C -0.003 4.003 16 C -0.519 4.519 17 H 0.068 0.932 18 C 0.067 3.933 19 N -0.906 5.906 20 Si 0.878 3.122 21 H -0.278 1.278 22 H -0.290 1.290 23 H -0.260 1.260 24 C 0.092 3.908 25 C 0.513 3.487 26 O -0.511 6.511 27 H 0.035 0.965 28 H 0.038 0.962 29 H 0.092 0.908 30 H 0.054 0.946 31 H 0.046 0.954 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.109 0.891 37 H 0.077 0.923 38 H 0.350 0.650 39 H 0.336 0.664 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.034 0.966 43 H 0.009 0.991 44 H 0.261 0.739 45 H 0.131 0.869 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.139 16.278 5.756 22.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C -0.036 4.036 4 C -0.012 4.012 5 N -0.337 5.337 6 C -0.023 4.023 7 C -0.028 4.028 8 N -0.354 5.354 9 C 0.282 3.718 10 O -0.423 6.423 11 C -0.043 4.043 12 H 0.118 0.882 13 N -0.337 5.337 14 C -0.127 4.127 15 C -0.041 4.041 16 C -0.557 4.557 17 H 0.086 0.914 18 C -0.134 4.134 19 N -0.546 5.546 20 Si 0.705 3.295 21 H -0.204 1.204 22 H -0.216 1.216 23 H -0.184 1.184 24 C -0.034 4.034 25 C 0.299 3.701 26 O -0.385 6.385 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.110 0.890 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.108 0.892 33 H 0.113 0.887 34 H 0.086 0.914 35 H 0.104 0.896 36 H 0.127 0.873 37 H 0.095 0.905 38 H 0.164 0.836 39 H 0.148 0.852 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.053 0.947 43 H 0.027 0.973 44 H 0.071 0.929 45 H 0.149 0.851 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 14.601 15.317 5.946 21.981 hybrid contribution 0.469 0.568 -0.276 0.787 sum 15.070 15.885 5.671 22.619 Atomic orbital electron populations 1.22764 0.81103 1.03514 0.99121 1.88151 1.19340 1.25689 1.95150 1.22893 0.94242 0.86475 0.99951 1.21599 0.92880 0.98716 0.88023 1.47131 1.67389 1.06158 1.13062 1.21762 0.99993 0.93201 0.87350 1.21913 0.96576 0.83995 1.00296 1.48334 1.64848 1.13439 1.08730 1.22701 0.75596 0.92235 0.81271 1.90647 1.55143 1.55421 1.41076 1.21939 1.00686 0.89370 0.92295 0.88240 1.59022 1.16182 1.56984 1.01500 1.21522 0.89303 1.01923 0.99962 1.19484 0.96287 0.90494 0.97813 1.21135 0.95023 0.95750 1.43747 0.91381 1.24990 0.94680 0.98983 0.94742 1.69921 1.10124 1.25967 1.48561 0.86794 0.79892 0.83168 0.79625 1.20421 1.21648 1.18424 1.22102 1.04071 0.94001 0.83187 1.20066 0.78444 0.82123 0.89486 1.90817 1.46780 1.65657 1.35238 0.94656 0.94362 0.88995 0.92833 0.93612 0.89223 0.88671 0.91411 0.89627 0.87259 0.90451 0.83559 0.85240 0.92132 0.92143 0.94734 0.97300 0.92894 0.85087 0.87975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.55 16 2 O -0.37 -5.74 9.07 -51.69 -0.47 -6.21 16 3 C 0.04 0.47 6.28 37.16 0.23 0.70 16 4 C 0.11 1.07 5.72 -4.04 -0.02 1.05 16 5 N -0.60 -6.67 2.80 -174.90 -0.49 -7.16 16 6 C 0.10 0.85 6.57 -4.51 -0.03 0.82 16 7 C 0.10 0.86 6.52 -3.63 -0.02 0.84 16 8 N -0.62 -7.45 2.98 -174.17 -0.52 -7.97 16 9 C 0.49 7.24 6.96 -10.98 -0.08 7.16 16 10 O -0.55 -9.10 15.73 5.56 0.09 -9.01 16 11 C 0.07 1.14 2.30 -68.86 -0.16 0.98 16 12 H 0.10 1.43 7.07 -51.93 -0.37 1.06 16 13 N -0.81 -12.41 8.44 -5.65 -0.05 -12.46 16 14 C -0.09 -1.75 4.45 -26.73 -0.12 -1.87 16 15 C 0.00 -0.08 3.93 -27.88 -0.11 -0.19 16 16 C -0.52 -15.01 9.66 -34.44 -0.33 -15.35 16 17 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 18 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 19 N -0.91 -28.51 13.96 55.43 0.77 -27.73 16 20 Si 0.88 22.25 27.47 -169.99 -4.67 17.58 16 21 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 23 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 24 C 0.09 1.13 5.96 -5.04 -0.03 1.10 16 25 C 0.51 7.18 7.25 -11.75 -0.09 7.10 16 26 O -0.51 -9.13 15.01 -10.91 -0.16 -9.30 16 27 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.52 7.80 -51.93 -0.41 0.11 16 33 H 0.09 1.07 7.22 -51.93 -0.38 0.70 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.09 0.43 7.84 -51.93 -0.41 0.02 16 36 H 0.11 1.04 7.06 -51.92 -0.37 0.67 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.35 5.48 8.58 -39.29 -0.34 5.14 16 39 H 0.34 4.35 9.06 -39.30 -0.36 4.00 16 40 H 0.06 1.21 6.77 -51.93 -0.35 0.86 16 41 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.03 0.85 6.81 -51.93 -0.35 0.49 16 43 H 0.01 0.21 7.57 -51.93 -0.39 -0.19 16 44 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 45 H 0.13 1.85 4.88 -51.93 -0.25 1.59 16 46 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 368.55 15.07 5.55 5.55 Total: -1.00 -36.91 368.55 -7.04 -43.95 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -7.36 Total: 6.98 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: 0.26 Total: 5.78 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: -0.28 Total: -55.33 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.55 Total: -24.51 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.67 Total: 17.58 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.91 -7.04 -43.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424170261.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.300 kcal (2) G-P(sol) polarization free energy of solvation -36.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds