Wall clock time and date at job start Fri Apr 10 2020 18:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42904 * 113.99911 * 2 1 4 4 C 1.53005 * 109.46968 * 179.97438 * 3 2 1 5 5 N 1.46906 * 109.46767 * 63.65059 * 4 3 2 6 6 C 1.46892 * 110.99971 * 200.12933 * 5 4 3 7 7 C 1.46903 * 110.99726 * 76.17692 * 5 4 3 8 8 C 1.53001 * 109.47105 * 189.99827 * 7 5 4 9 9 C 1.52992 * 109.47211 * 179.97438 * 8 7 5 10 10 N 1.46502 * 109.47122 * 179.97438 * 9 8 7 11 11 C 1.34778 * 120.00212 * 180.02562 * 10 9 8 12 12 O 1.21594 * 119.99703 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00236 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00067 * 180.27586 * 13 11 10 15 15 C 1.52996 * 109.47392 * 176.40011 * 14 13 11 16 16 C 1.50701 * 115.54684 * 61.60347 * 15 14 13 17 17 H 1.08000 * 119.99996 * 265.28376 * 16 15 14 18 18 C 1.37873 * 120.00101 * 85.28906 * 16 15 14 19 19 N 1.31517 * 119.99851 * 359.02642 * 18 16 15 20 20 Si 1.86800 * 119.99991 * 179.02739 * 18 16 15 21 21 H 1.48508 * 109.46924 * 89.99949 * 20 18 16 22 22 H 1.48503 * 109.47124 * 209.99434 * 20 18 16 23 23 H 1.48502 * 109.47314 * 329.99840 * 20 18 16 24 24 C 1.53000 * 117.49902 * 275.93836 * 15 14 13 25 25 C 1.52994 * 117.50265 * 207.27533 * 15 14 13 26 26 H 1.08994 * 109.47100 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46843 * 299.99914 * 1 2 3 28 28 H 1.09007 * 109.47311 * 59.99268 * 1 2 3 29 29 H 1.09000 * 109.46369 * 60.00690 * 3 2 1 30 30 H 1.08997 * 109.47650 * 300.00386 * 3 2 1 31 31 H 1.08997 * 109.47221 * 303.65627 * 4 3 2 32 32 H 1.09000 * 109.47073 * 183.65208 * 4 3 2 33 33 H 1.09002 * 109.46918 * 290.11003 * 6 5 4 34 34 H 1.09003 * 109.47458 * 50.10843 * 6 5 4 35 35 H 1.09001 * 109.47227 * 170.11210 * 6 5 4 36 36 H 1.08995 * 109.47380 * 69.99685 * 7 5 4 37 37 H 1.09005 * 109.47050 * 309.99387 * 7 5 4 38 38 H 1.09003 * 109.46998 * 60.00017 * 8 7 5 39 39 H 1.09001 * 109.47164 * 300.00378 * 8 7 5 40 40 H 1.09003 * 109.46807 * 60.00291 * 9 8 7 41 41 H 1.09001 * 109.47684 * 300.00450 * 9 8 7 42 42 H 0.96996 * 119.99898 * 0.02562 * 10 9 8 43 43 H 0.96997 * 119.99825 * 359.97438 * 13 11 10 44 44 H 1.09000 * 109.46949 * 296.40275 * 14 13 11 45 45 H 1.09004 * 109.47438 * 56.39545 * 14 13 11 46 46 H 0.97003 * 119.99587 * 185.05077 * 19 18 16 47 47 H 1.09000 * 117.49771 * 359.97438 * 24 15 14 48 48 H 1.08993 * 117.50000 * 145.01712 * 24 15 14 49 49 H 1.08999 * 117.50345 * 214.98153 * 25 15 14 50 50 H 1.09006 * 117.49430 * 359.97200 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9755 0.5329 -1.2402 6 6 5.3248 -0.0281 -1.0903 7 6 3.9159 1.4650 -2.3741 8 6 4.1375 0.6964 -3.6784 9 6 4.0748 1.6670 -4.8593 10 7 4.2876 0.9311 -6.1081 11 6 4.2753 1.5854 -7.2864 12 8 4.0871 2.7864 -7.3129 13 7 4.4705 0.9083 -8.4352 14 6 4.4632 1.6204 -9.7155 15 6 4.7948 0.6429 -10.8448 16 6 3.8252 -0.4968 -11.0235 17 1 4.0183 -1.4491 -10.5520 18 6 2.6916 -0.3239 -11.7890 19 7 2.4467 0.8413 -12.3475 20 14 1.5036 -1.7447 -12.0328 21 1 0.4796 -1.7238 -10.9574 22 1 0.8373 -1.6118 -13.3533 23 1 2.2493 -3.0279 -11.9814 24 6 6.2726 0.3640 -11.1264 25 6 5.4541 1.2133 -12.1020 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5140 -0.8900 29 1 1.6886 1.8463 0.8901 30 1 1.6886 1.8465 -0.8899 31 1 3.8524 0.5884 0.8563 32 1 3.9787 2.1784 0.0661 33 1 6.0500 0.7829 -1.0227 34 1 5.3688 -0.6314 -0.1836 35 1 5.5569 -0.6519 -1.9535 36 1 4.6914 2.2228 -2.2627 37 1 2.9382 1.9464 -2.3977 38 1 3.3619 -0.0614 -3.7897 39 1 5.1151 0.2149 -3.6547 40 1 4.8501 2.4251 -4.7481 41 1 3.0970 2.1482 -4.8827 42 1 4.4373 -0.0270 -6.0869 43 1 4.6202 -0.0498 -8.4140 44 1 3.4765 2.0513 -9.8859 45 1 5.2080 2.4160 -9.6931 46 1 1.6145 0.9851 -12.8245 47 1 7.0085 0.8772 -10.5074 48 1 6.5434 -0.6437 -11.4414 49 1 5.1868 0.7640 -13.0585 50 1 5.6511 2.2851 -12.1249 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430159284.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:20 Heat of formation + Delta-G solvation = -52.636366 kcal Electronic energy + Delta-G solvation = -25880.554099 eV Core-core repulsion = 22136.791778 eV Total energy + Delta-G solvation = -3743.762321 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.40520 -38.79239 -37.36437 -36.73652 -34.92636 -33.20988 -31.96005 -31.64038 -30.08326 -27.05406 -26.62173 -25.82106 -25.03188 -23.98547 -21.93118 -21.16029 -20.99394 -20.09608 -19.35117 -17.59123 -16.89312 -16.59991 -16.35057 -15.85021 -15.80747 -15.39294 -14.99370 -14.81253 -14.65100 -14.43124 -14.03485 -13.85247 -13.66823 -13.20644 -12.93787 -12.67899 -12.56729 -12.42494 -12.06540 -12.03386 -11.73799 -11.58710 -11.56311 -11.44075 -11.22298 -10.97336 -10.91924 -10.78536 -10.51214 -10.22669 -9.89754 -9.70152 -9.45002 -8.98337 -8.79493 -8.60479 -8.46738 -8.21735 -7.91844 -6.05833 -4.15122 3.19448 3.27298 3.34944 3.36181 3.50851 3.65144 3.85300 4.36831 4.58924 4.68427 4.75678 4.84456 4.94532 4.98609 5.04319 5.09962 5.13839 5.15534 5.23013 5.24489 5.25977 5.34800 5.40781 5.43716 5.48822 5.54218 5.62885 5.72343 6.03482 6.06030 6.10817 6.37297 6.51250 6.62076 6.68372 6.73168 6.73750 6.84410 6.89811 6.96579 7.13426 7.38066 7.45870 7.47789 7.65861 7.82584 8.36167 8.71966 8.86258 9.25773 9.52052 11.02180 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.015247 B = 0.002314 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.937233 B =12096.852590 C =13168.868809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.375 6.375 3 C 0.065 3.935 4 C 0.055 3.945 5 N -0.534 5.534 6 C 0.023 3.977 7 C 0.057 3.943 8 C -0.127 4.127 9 C 0.144 3.856 10 N -0.754 5.754 11 C 0.697 3.303 12 O -0.606 6.606 13 N -0.720 5.720 14 C 0.182 3.818 15 C 0.026 3.974 16 C -0.498 4.498 17 H 0.059 0.941 18 C 0.073 3.927 19 N -0.875 5.875 20 Si 0.890 3.110 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.274 1.274 24 C -0.211 4.211 25 C -0.145 4.145 26 H 0.084 0.916 27 H 0.036 0.964 28 H 0.040 0.960 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.082 0.918 32 H 0.051 0.949 33 H 0.025 0.975 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.037 0.963 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.394 0.606 43 H 0.397 0.603 44 H 0.066 0.934 45 H 0.035 0.965 46 H 0.261 0.739 47 H 0.064 0.936 48 H 0.077 0.923 49 H 0.085 0.915 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.002 -0.712 24.323 24.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.293 6.293 3 C -0.012 4.012 4 C -0.073 4.073 5 N -0.258 5.258 6 C -0.125 4.125 7 C -0.071 4.071 8 C -0.165 4.165 9 C 0.018 3.982 10 N -0.411 5.411 11 C 0.397 3.603 12 O -0.486 6.486 13 N -0.372 5.372 14 C 0.059 3.941 15 C 0.025 3.975 16 C -0.536 4.536 17 H 0.077 0.923 18 C -0.131 4.131 19 N -0.511 5.511 20 Si 0.718 3.282 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.248 4.248 25 C -0.183 4.183 26 H 0.103 0.897 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.100 0.900 32 H 0.069 0.931 33 H 0.043 0.957 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.055 0.945 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.227 0.773 43 H 0.230 0.770 44 H 0.084 0.916 45 H 0.054 0.946 46 H 0.071 0.929 47 H 0.083 0.917 48 H 0.096 0.904 49 H 0.103 0.897 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.508 -0.052 23.986 24.034 hybrid contribution -0.328 -0.642 -0.032 0.722 sum 1.180 -0.693 23.955 23.994 Atomic orbital electron populations 1.22734 0.81536 1.02711 0.99671 1.87983 1.18998 1.27091 1.95249 1.22557 0.93428 0.85335 0.99876 1.22153 0.93935 0.98156 0.93053 1.61891 1.25204 1.35226 1.03445 1.22444 0.88151 0.99105 1.02778 1.22084 1.01474 0.93432 0.90135 1.21759 1.03154 0.98878 0.92692 1.20976 1.01493 0.94003 0.81721 1.45058 1.79803 1.11167 1.05076 1.16048 0.78342 0.85410 0.80502 1.90863 1.58000 1.13143 1.86602 1.45126 1.75507 1.11553 1.05024 1.20813 1.00587 0.92722 0.80023 1.19044 0.89332 0.96452 0.92658 1.20339 1.05926 0.96280 1.31057 0.92264 1.24987 0.97886 0.95680 0.94536 1.69988 1.24094 1.22503 1.34511 0.86631 0.81260 0.82779 0.77568 1.20646 1.21226 1.19856 1.23027 0.96064 1.00066 1.05688 1.22473 1.03769 0.96258 0.95793 0.89706 0.94531 0.94102 0.93243 0.93153 0.90000 0.93052 0.95675 0.91482 0.90893 0.94465 0.90522 0.90255 0.91276 0.92245 0.92006 0.77276 0.76968 0.91572 0.94624 0.92891 0.91698 0.90439 0.89683 0.91722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.37 -3.74 10.63 -35.23 -0.37 -4.12 16 3 C 0.07 0.51 6.12 37.16 0.23 0.73 16 4 C 0.06 0.41 5.40 -3.82 -0.02 0.39 16 5 N -0.53 -4.68 4.62 -242.91 -1.12 -5.81 16 6 C 0.02 0.17 9.22 60.06 0.55 0.73 16 7 C 0.06 0.50 4.78 -3.82 -0.02 0.48 16 8 C -0.13 -1.19 5.25 -26.73 -0.14 -1.33 16 9 C 0.14 1.79 5.67 -4.04 -0.02 1.77 16 10 N -0.75 -10.99 5.56 -65.22 -0.36 -11.36 16 11 C 0.70 13.72 8.57 -86.92 -0.74 12.98 16 12 O -0.61 -14.31 16.34 5.28 0.09 -14.23 16 13 N -0.72 -14.43 5.45 -65.22 -0.36 -14.78 16 14 C 0.18 4.24 5.51 -4.04 -0.02 4.22 16 15 C 0.03 0.62 1.47 -155.67 -0.23 0.39 16 16 C -0.50 -12.86 8.45 -34.44 -0.29 -13.15 16 17 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 18 C 0.07 1.95 5.41 -17.82 -0.10 1.85 16 19 N -0.87 -24.47 12.77 55.43 0.71 -23.76 16 20 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 24 C -0.21 -4.45 9.95 -26.69 -0.27 -4.71 16 25 C -0.14 -3.35 9.29 -26.70 -0.25 -3.60 16 26 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 28 H 0.04 0.29 8.14 -51.92 -0.42 -0.13 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.39 6.72 -51.93 -0.35 0.05 16 31 H 0.08 0.58 7.73 -51.93 -0.40 0.18 16 32 H 0.05 0.32 7.99 -51.93 -0.42 -0.10 16 33 H 0.02 0.17 8.06 -51.93 -0.42 -0.24 16 34 H 0.07 0.46 7.83 -51.93 -0.41 0.05 16 35 H 0.07 0.55 6.76 -51.93 -0.35 0.20 16 36 H 0.04 0.31 8.06 -51.93 -0.42 -0.11 16 37 H 0.08 0.67 6.61 -51.93 -0.34 0.33 16 38 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.61 6.68 -51.93 -0.35 0.26 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.39 4.70 8.49 -40.82 -0.35 4.36 16 43 H 0.40 7.23 8.24 -40.82 -0.34 6.90 16 44 H 0.07 1.76 8.14 -51.93 -0.42 1.34 16 45 H 0.04 0.82 8.11 -51.93 -0.42 0.40 16 46 H 0.26 7.03 8.32 -40.82 -0.34 6.69 16 47 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 48 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 49 H 0.08 2.09 8.14 -51.93 -0.42 1.67 16 50 H 0.06 1.43 8.14 -51.93 -0.42 1.00 16 LS Contribution 407.46 15.07 6.14 6.14 Total: -1.00 -31.88 407.46 -9.68 -41.56 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -9.17 Total: 8.65 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -0.20 Total: 2.07 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: -1.13 Total: -55.71 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -0.29 Total: -18.34 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -31.88 -9.68 -41.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430159284.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.074 kcal (2) G-P(sol) polarization free energy of solvation -31.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds