Wall clock time and date at job start Fri Apr 10 2020 18:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42904 * 113.99911 * 2 1 4 4 C 1.53005 * 109.46968 * 179.97438 * 3 2 1 5 5 N 1.46906 * 109.46767 * 63.65059 * 4 3 2 6 6 C 1.46892 * 110.99971 * 200.12933 * 5 4 3 7 7 C 1.46903 * 110.99726 * 76.17692 * 5 4 3 8 8 C 1.53001 * 109.47105 * 189.99827 * 7 5 4 9 9 C 1.52992 * 109.47211 * 179.97438 * 8 7 5 10 10 N 1.46502 * 109.47122 * 179.97438 * 9 8 7 11 11 C 1.34778 * 120.00212 * 180.02562 * 10 9 8 12 12 O 1.21594 * 119.99703 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00236 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00067 * 180.27586 * 13 11 10 15 15 C 1.52996 * 109.47392 * 176.40011 * 14 13 11 16 16 C 1.50701 * 115.54684 * 61.60347 * 15 14 13 17 17 H 1.08000 * 119.99996 * 265.28376 * 16 15 14 18 18 C 1.37873 * 120.00101 * 85.28906 * 16 15 14 19 19 N 1.31517 * 119.99851 * 359.02642 * 18 16 15 20 20 Si 1.86800 * 119.99991 * 179.02739 * 18 16 15 21 21 H 1.48508 * 109.46924 * 89.99949 * 20 18 16 22 22 H 1.48503 * 109.47124 * 209.99434 * 20 18 16 23 23 H 1.48502 * 109.47314 * 329.99840 * 20 18 16 24 24 C 1.53000 * 117.49902 * 275.93836 * 15 14 13 25 25 C 1.52994 * 117.50265 * 207.27533 * 15 14 13 26 26 H 1.08994 * 109.47100 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46843 * 299.99914 * 1 2 3 28 28 H 1.09007 * 109.47311 * 59.99268 * 1 2 3 29 29 H 1.09000 * 109.46369 * 60.00690 * 3 2 1 30 30 H 1.08997 * 109.47650 * 300.00386 * 3 2 1 31 31 H 1.08997 * 109.47221 * 303.65627 * 4 3 2 32 32 H 1.09000 * 109.47073 * 183.65208 * 4 3 2 33 33 H 1.09002 * 109.46918 * 290.11003 * 6 5 4 34 34 H 1.09003 * 109.47458 * 50.10843 * 6 5 4 35 35 H 1.09001 * 109.47227 * 170.11210 * 6 5 4 36 36 H 1.08995 * 109.47380 * 69.99685 * 7 5 4 37 37 H 1.09005 * 109.47050 * 309.99387 * 7 5 4 38 38 H 1.09003 * 109.46998 * 60.00017 * 8 7 5 39 39 H 1.09001 * 109.47164 * 300.00378 * 8 7 5 40 40 H 1.09003 * 109.46807 * 60.00291 * 9 8 7 41 41 H 1.09001 * 109.47684 * 300.00450 * 9 8 7 42 42 H 0.96996 * 119.99898 * 0.02562 * 10 9 8 43 43 H 0.96997 * 119.99825 * 359.97438 * 13 11 10 44 44 H 1.09000 * 109.46949 * 296.40275 * 14 13 11 45 45 H 1.09004 * 109.47438 * 56.39545 * 14 13 11 46 46 H 0.97003 * 119.99587 * 185.05077 * 19 18 16 47 47 H 1.09000 * 117.49771 * 359.97438 * 24 15 14 48 48 H 1.08993 * 117.50000 * 145.01712 * 24 15 14 49 49 H 1.08999 * 117.50345 * 214.98153 * 25 15 14 50 50 H 1.09006 * 117.49430 * 359.97200 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9755 0.5329 -1.2402 6 6 5.3248 -0.0281 -1.0903 7 6 3.9159 1.4650 -2.3741 8 6 4.1375 0.6964 -3.6784 9 6 4.0748 1.6670 -4.8593 10 7 4.2876 0.9311 -6.1081 11 6 4.2753 1.5854 -7.2864 12 8 4.0871 2.7864 -7.3129 13 7 4.4705 0.9083 -8.4352 14 6 4.4632 1.6204 -9.7155 15 6 4.7948 0.6429 -10.8448 16 6 3.8252 -0.4968 -11.0235 17 1 4.0183 -1.4491 -10.5520 18 6 2.6916 -0.3239 -11.7890 19 7 2.4467 0.8413 -12.3475 20 14 1.5036 -1.7447 -12.0328 21 1 0.4796 -1.7238 -10.9574 22 1 0.8373 -1.6118 -13.3533 23 1 2.2493 -3.0279 -11.9814 24 6 6.2726 0.3640 -11.1264 25 6 5.4541 1.2133 -12.1020 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5140 -0.8900 29 1 1.6886 1.8463 0.8901 30 1 1.6886 1.8465 -0.8899 31 1 3.8524 0.5884 0.8563 32 1 3.9787 2.1784 0.0661 33 1 6.0500 0.7829 -1.0227 34 1 5.3688 -0.6314 -0.1836 35 1 5.5569 -0.6519 -1.9535 36 1 4.6914 2.2228 -2.2627 37 1 2.9382 1.9464 -2.3977 38 1 3.3619 -0.0614 -3.7897 39 1 5.1151 0.2149 -3.6547 40 1 4.8501 2.4251 -4.7481 41 1 3.0970 2.1482 -4.8827 42 1 4.4373 -0.0270 -6.0869 43 1 4.6202 -0.0498 -8.4140 44 1 3.4765 2.0513 -9.8859 45 1 5.2080 2.4160 -9.6931 46 1 1.6145 0.9851 -12.8245 47 1 7.0085 0.8772 -10.5074 48 1 6.5434 -0.6437 -11.4414 49 1 5.1868 0.7640 -13.0585 50 1 5.6511 2.2851 -12.1249 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430159284.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:19 Heat of formation + Delta-G solvation = -75.729564 kcal Electronic energy + Delta-G solvation = -25881.555496 eV Core-core repulsion = 22136.791778 eV Total energy + Delta-G solvation = -3744.763717 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.92936 -39.47252 -38.58383 -37.99029 -36.12285 -34.92544 -33.94906 -32.61593 -30.74624 -28.32781 -27.51475 -27.22008 -26.44636 -24.84798 -22.95592 -22.72947 -21.96275 -21.39750 -21.17895 -19.13638 -18.10194 -17.52904 -17.25819 -17.08876 -16.83293 -16.57581 -16.33019 -16.06777 -15.79554 -15.50011 -15.38785 -14.96671 -14.89536 -14.66380 -14.39171 -13.80449 -13.48550 -13.46034 -13.26555 -13.05645 -12.89539 -12.82581 -12.75589 -12.65077 -12.33545 -12.33173 -12.15572 -12.01486 -11.93066 -11.50697 -11.46969 -11.23963 -10.89123 -10.51210 -10.43441 -10.26809 -10.01629 -9.55696 -9.21455 -8.08114 -6.21786 1.43659 1.45805 1.53983 1.84891 2.26589 2.44025 2.88156 3.02804 3.20671 3.38392 3.65253 3.93191 4.03210 4.11075 4.22626 4.27475 4.29925 4.43939 4.49800 4.50671 4.56144 4.57875 4.61756 4.64329 4.68399 4.69037 4.75656 4.78688 4.81313 4.90063 4.93470 5.01200 5.04348 5.09224 5.19831 5.25154 5.30211 5.56850 5.59181 5.64487 5.74558 5.80087 6.08838 6.13544 6.19476 6.38452 6.38593 6.85865 7.26688 7.48033 7.70708 8.99708 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.015247 B = 0.002314 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.937233 B =12096.852590 C =13168.868809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.401 6.401 3 C 0.062 3.938 4 C 0.055 3.945 5 N -0.549 5.549 6 C 0.023 3.977 7 C 0.060 3.940 8 C -0.110 4.110 9 C 0.144 3.856 10 N -0.734 5.734 11 C 0.694 3.306 12 O -0.648 6.648 13 N -0.715 5.715 14 C 0.199 3.801 15 C 0.004 3.996 16 C -0.501 4.501 17 H 0.065 0.935 18 C 0.023 3.977 19 N -0.909 5.909 20 Si 0.950 3.050 21 H -0.281 1.281 22 H -0.291 1.291 23 H -0.262 1.262 24 C -0.177 4.177 25 C -0.156 4.156 26 H 0.089 0.911 27 H 0.050 0.950 28 H 0.039 0.961 29 H 0.066 0.934 30 H 0.046 0.954 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.031 0.969 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.043 0.957 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.056 0.944 41 H 0.049 0.951 42 H 0.410 0.590 43 H 0.407 0.593 44 H 0.023 0.977 45 H 0.034 0.966 46 H 0.258 0.742 47 H 0.088 0.912 48 H 0.086 0.914 49 H 0.064 0.936 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.844 -2.088 26.062 26.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.320 6.320 3 C -0.015 4.015 4 C -0.073 4.073 5 N -0.273 5.273 6 C -0.125 4.125 7 C -0.068 4.068 8 C -0.148 4.148 9 C 0.019 3.981 10 N -0.391 5.391 11 C 0.394 3.606 12 O -0.531 6.531 13 N -0.368 5.368 14 C 0.074 3.926 15 C 0.003 3.997 16 C -0.539 4.539 17 H 0.083 0.917 18 C -0.178 4.178 19 N -0.547 5.547 20 Si 0.777 3.223 21 H -0.207 1.207 22 H -0.217 1.217 23 H -0.187 1.187 24 C -0.214 4.214 25 C -0.195 4.195 26 H 0.107 0.893 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.103 0.897 32 H 0.083 0.917 33 H 0.049 0.951 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.061 0.939 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.246 0.754 43 H 0.243 0.757 44 H 0.041 0.959 45 H 0.053 0.947 46 H 0.067 0.933 47 H 0.106 0.894 48 H 0.104 0.896 49 H 0.083 0.917 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.367 -1.490 25.772 25.924 hybrid contribution -0.575 -0.199 -0.510 0.794 sum 1.792 -1.689 25.262 25.382 Atomic orbital electron populations 1.22837 0.80565 1.03280 1.00291 1.87937 1.20259 1.28418 1.95419 1.22675 0.93662 0.84713 1.00457 1.22206 0.93743 0.98846 0.92520 1.61872 1.26026 1.35529 1.03909 1.22462 0.87686 0.99297 1.03014 1.22014 1.01551 0.93444 0.89820 1.21606 1.03664 0.97917 0.91661 1.21096 1.00683 0.94638 0.81655 1.44931 1.78062 1.11990 1.04125 1.16225 0.78019 0.84946 0.81433 1.90835 1.59814 1.15169 1.87316 1.44904 1.75735 1.11889 1.04295 1.20385 0.98026 0.92781 0.81431 1.19070 0.91044 0.96503 0.93071 1.20665 1.06111 0.96934 1.30202 0.91697 1.25719 0.99711 0.97663 0.94671 1.70118 1.24462 1.24385 1.35704 0.85673 0.79238 0.80450 0.76967 1.20668 1.21695 1.18662 1.23010 0.94556 1.00148 1.03647 1.22408 1.05181 0.96883 0.94999 0.89256 0.93102 0.94261 0.91578 0.93606 0.89683 0.91719 0.95079 0.90983 0.90987 0.93886 0.90839 0.90683 0.90063 0.92514 0.93247 0.75380 0.75736 0.95854 0.94741 0.93300 0.89408 0.89568 0.91721 0.91205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 113.37 1.25 1.61 16 2 O -0.40 -7.59 10.63 -148.98 -1.58 -9.17 16 3 C 0.06 0.88 6.12 71.98 0.44 1.32 16 4 C 0.05 0.71 5.40 86.30 0.47 1.18 16 5 N -0.55 -8.68 4.62 -922.44 -4.26 -12.94 16 6 C 0.02 0.30 9.22 127.69 1.18 1.48 16 7 C 0.06 0.95 4.78 86.30 0.41 1.36 16 8 C -0.11 -1.88 5.25 30.59 0.16 -1.72 16 9 C 0.14 3.42 5.67 86.38 0.49 3.91 16 10 N -0.73 -20.36 5.56 -478.53 -2.66 -23.02 16 11 C 0.69 26.95 8.57 179.05 1.53 28.48 16 12 O -0.65 -30.87 16.34 -4.01 -0.07 -30.94 16 13 N -0.71 -28.18 5.45 -478.53 -2.61 -30.79 16 14 C 0.20 9.32 5.51 86.38 0.48 9.79 16 15 C 0.00 0.18 1.47 -52.93 -0.08 0.11 16 16 C -0.50 -25.53 8.45 25.60 0.22 -25.32 16 17 H 0.06 3.16 7.81 -2.91 -0.02 3.14 16 18 C 0.02 1.21 5.41 84.65 0.46 1.67 16 19 N -0.91 -51.79 12.77 21.45 0.27 -51.52 16 20 Si 0.95 42.31 29.54 68.60 2.03 44.34 16 21 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 22 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 23 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 24 C -0.18 -7.06 9.95 30.62 0.30 -6.76 16 25 C -0.16 -7.21 9.29 30.62 0.28 -6.93 16 26 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.04 0.53 8.14 -2.38 -0.02 0.51 16 29 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.05 0.68 6.72 -2.39 -0.02 0.66 16 31 H 0.08 1.05 7.73 -2.39 -0.02 1.03 16 32 H 0.06 0.67 7.99 -2.39 -0.02 0.65 16 33 H 0.03 0.36 8.06 -2.39 -0.02 0.34 16 34 H 0.07 0.85 7.83 -2.39 -0.02 0.83 16 35 H 0.07 0.93 6.76 -2.39 -0.02 0.91 16 36 H 0.04 0.63 8.06 -2.39 -0.02 0.61 16 37 H 0.07 1.20 6.61 -2.38 -0.02 1.19 16 38 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.08 1.22 6.68 -2.39 -0.02 1.20 16 40 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.41 8.87 8.49 -92.71 -0.79 8.08 16 43 H 0.41 14.20 8.24 -92.71 -0.76 13.44 16 44 H 0.02 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.03 1.60 8.11 -2.38 -0.02 1.58 16 46 H 0.26 14.22 8.32 -92.71 -0.77 13.45 16 47 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 48 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 49 H 0.06 3.22 8.14 -2.39 -0.02 3.20 16 50 H 0.07 3.09 8.14 -2.38 -0.02 3.07 16 Total: -1.00 -68.49 407.46 -1.92 -70.41 By element: Atomic # 1 Polarization: 34.07 SS G_CDS: -0.63 Total: 33.44 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: 7.59 Total: 10.19 kcal Atomic # 7 Polarization: -109.01 SS G_CDS: -9.26 Total: -118.27 kcal Atomic # 8 Polarization: -38.46 SS G_CDS: -1.65 Total: -40.11 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Total: -68.49 -1.92 -70.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430159284.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.317 kcal (2) G-P(sol) polarization free energy of solvation -68.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds