Wall clock time and date at job start Fri Apr 10 2020 18:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.49903 * 2 1 4 4 C 1.53239 * 109.49494 * 239.94382 * 2 1 3 5 5 N 1.47081 * 108.52121 * 186.21084 * 4 2 1 6 6 C 1.34776 * 120.88541 * 231.18584 * 5 4 2 7 7 O 1.21578 * 120.00584 * 184.99891 * 6 5 4 8 8 N 1.34778 * 119.99611 * 4.99920 * 6 5 4 9 9 C 1.46497 * 120.00405 * 174.99718 * 8 6 5 10 10 C 1.52994 * 109.47578 * 179.97438 * 9 8 6 11 11 C 1.50700 * 109.47359 * 179.97438 * 10 9 8 12 12 H 1.08005 * 119.99739 * 0.02562 * 11 10 9 13 13 C 1.37874 * 120.00383 * 179.72562 * 11 10 9 14 14 N 1.31520 * 120.00362 * 180.27559 * 13 11 10 15 15 Si 1.86803 * 119.99786 * 0.27984 * 13 11 10 16 16 H 1.48500 * 109.47133 * 89.99645 * 15 13 11 17 17 H 1.48500 * 109.46896 * 209.99791 * 15 13 11 18 18 H 1.48507 * 109.46949 * 329.99649 * 15 13 11 19 19 C 1.47080 * 118.23826 * 51.45547 * 5 4 2 20 20 C 1.53690 * 108.27966 * 308.48649 * 19 5 4 21 21 N 1.46901 * 109.25674 * 54.07768 * 20 19 5 22 22 C 1.46906 * 110.99747 * 172.61016 * 21 20 19 23 23 C 1.52991 * 109.47314 * 315.53325 * 22 21 20 24 24 C 1.53000 * 109.47252 * 189.07464 * 23 22 21 25 25 C 1.53004 * 109.47529 * 309.08088 * 23 22 21 26 26 O 1.42899 * 109.46760 * 69.07918 * 23 22 21 27 27 H 1.09001 * 109.47422 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47387 * 300.05972 * 1 2 3 29 29 H 1.09000 * 109.46863 * 60.05534 * 1 2 3 30 30 H 1.08996 * 109.63115 * 66.50551 * 4 2 1 31 31 H 1.08992 * 109.62726 * 305.91654 * 4 2 1 32 32 H 0.97006 * 120.00090 * 354.99442 * 8 6 5 33 33 H 1.09001 * 109.47055 * 59.99652 * 9 8 6 34 34 H 1.08999 * 109.46987 * 300.00252 * 9 8 6 35 35 H 1.09005 * 109.46726 * 60.00631 * 10 9 8 36 36 H 1.08999 * 109.47444 * 300.00311 * 10 9 8 37 37 H 0.96994 * 119.99839 * 180.02562 * 14 13 11 38 38 H 1.09004 * 109.62709 * 68.25088 * 19 5 4 39 39 H 1.08996 * 109.63316 * 188.83027 * 19 5 4 40 40 H 1.09000 * 109.64714 * 294.07940 * 20 19 5 41 41 H 1.09000 * 109.44484 * 173.95867 * 20 19 5 42 42 H 1.08994 * 109.47006 * 75.54481 * 22 21 20 43 43 H 1.09003 * 109.46724 * 195.53590 * 22 21 20 44 44 H 1.09004 * 109.46695 * 60.00875 * 24 23 22 45 45 H 1.09002 * 109.47230 * 179.97438 * 24 23 22 46 46 H 1.08994 * 109.47278 * 300.00738 * 24 23 22 47 47 H 1.08995 * 109.46845 * 60.00023 * 25 23 22 48 48 H 1.09004 * 109.47065 * 179.97438 * 25 23 22 49 49 H 1.08994 * 109.46679 * 300.00028 * 25 23 22 50 50 H 0.96698 * 114.00513 * 60.00333 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7235 -1.2503 5 7 3.5042 -0.8429 -1.1555 6 6 4.2978 -0.4486 -2.1709 7 8 5.4974 -0.6377 -2.1137 8 7 3.7615 0.1554 -3.2498 9 6 4.6328 0.6822 -4.3031 10 6 3.7780 1.3120 -5.4047 11 6 4.6743 1.8544 -6.4879 12 1 5.7465 1.7591 -6.3996 13 6 4.1255 2.4669 -7.5945 14 7 4.9076 2.9355 -8.5424 15 14 2.2710 2.6313 -7.7474 16 1 1.8350 3.9102 -7.1316 17 1 1.8896 2.6175 -9.1826 18 1 1.6143 1.4966 -7.0497 19 6 4.0778 -1.4097 0.0746 20 6 3.4866 -0.6539 1.2750 21 7 2.0201 -0.6940 1.1983 22 6 1.4139 -0.1363 2.4147 23 6 2.1442 -0.6804 3.6441 24 6 1.3791 -0.2844 4.9085 25 6 2.2271 -2.2056 3.5546 26 8 3.4635 -0.1338 3.6950 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5147 0.8894 29 1 -0.3633 0.5130 -0.8905 30 1 1.7777 -0.1499 -2.1388 31 1 1.5958 -1.7166 -1.3065 32 1 2.7985 0.2412 -3.3290 33 1 5.2262 -0.1297 -4.7237 34 1 5.2967 1.4369 -3.8817 35 1 3.1844 2.1239 -4.9844 36 1 3.1143 0.5569 -5.8260 37 1 4.5214 3.3667 -9.3207 38 1 3.8242 -2.4676 0.1432 39 1 5.1612 -1.2901 0.0624 40 1 3.8234 0.3827 1.2575 41 1 3.8156 -1.1276 2.1999 42 1 1.4947 0.9505 2.3954 43 1 0.3629 -0.4217 2.4605 44 1 0.3727 -0.7014 4.8697 45 1 1.8991 -0.6725 5.7844 46 1 1.3200 0.8020 4.9722 47 1 2.7722 -2.4875 2.6539 48 1 2.7478 -2.5931 4.4304 49 1 1.2207 -2.6224 3.5158 50 1 3.4876 0.8311 3.7527 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000436329552.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:34 Heat of formation + Delta-G solvation = -61.306794 kcal Electronic energy + Delta-G solvation = -27599.857693 eV Core-core repulsion = 23855.719394 eV Total energy + Delta-G solvation = -3744.138299 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.65526 -39.42960 -37.48456 -35.07491 -34.48183 -32.99317 -32.81343 -32.21886 -30.13347 -28.46899 -27.73862 -27.07497 -25.11497 -24.35828 -22.64929 -21.01160 -20.80860 -20.41706 -19.34834 -17.99668 -17.23837 -16.88370 -16.12022 -15.86569 -15.85101 -15.45780 -15.13157 -14.77127 -14.34611 -14.05096 -13.98037 -13.79673 -13.65403 -13.24724 -12.97972 -12.76982 -12.61170 -12.58440 -12.48797 -12.34499 -12.13756 -11.98008 -11.83286 -11.74383 -11.39851 -11.26375 -11.22723 -11.18016 -10.84240 -10.37167 -10.22039 -10.02495 -9.92741 -9.63594 -9.30610 -8.83363 -8.62134 -8.54128 -8.18896 -6.09592 -4.09383 2.85505 3.25356 3.32881 3.34425 3.45622 3.59616 3.76749 4.17732 4.29958 4.38619 4.48646 4.52927 4.60419 4.77329 4.88239 4.97438 5.07331 5.17449 5.20752 5.22343 5.23197 5.28392 5.40523 5.44347 5.47598 5.52206 5.56965 5.62492 5.69821 5.71226 5.84949 5.90900 6.00032 6.09161 6.09644 6.27753 6.54195 6.61020 6.73217 6.82818 6.86001 7.09214 7.22862 7.26515 7.30691 7.69216 8.27207 8.47308 8.92948 8.96193 9.50542 11.03504 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.024067 B = 0.002734 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.162984 B =10239.426412 C =10902.277962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.066 3.934 3 H 0.045 0.955 4 C 0.123 3.877 5 N -0.637 5.637 6 C 0.703 3.297 7 O -0.592 6.592 8 N -0.744 5.744 9 C 0.148 3.852 10 C -0.021 4.021 11 C -0.521 4.521 12 H 0.076 0.924 13 C 0.069 3.931 14 N -0.899 5.899 15 Si 0.882 3.118 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.266 1.266 19 C 0.133 3.867 20 C 0.026 3.974 21 N -0.525 5.525 22 C 0.031 3.969 23 C 0.123 3.877 24 C -0.176 4.176 25 C -0.136 4.136 26 O -0.555 6.555 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.389 0.611 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.016 0.984 36 H 0.021 0.979 37 H 0.264 0.736 38 H 0.066 0.934 39 H 0.094 0.906 40 H 0.033 0.967 41 H 0.127 0.873 42 H 0.034 0.966 43 H 0.085 0.915 44 H 0.067 0.933 45 H 0.066 0.934 46 H 0.056 0.944 47 H 0.079 0.921 48 H 0.055 0.945 49 H 0.068 0.932 50 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.099 -7.887 27.586 31.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.043 4.043 3 H 0.063 0.937 4 C -0.001 4.001 5 N -0.376 5.376 6 C 0.404 3.596 7 O -0.471 6.471 8 N -0.399 5.399 9 C 0.025 3.975 10 C -0.059 4.059 11 C -0.559 4.559 12 H 0.094 0.906 13 C -0.133 4.133 14 N -0.537 5.537 15 Si 0.709 3.291 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.191 1.191 19 C 0.010 3.990 20 C -0.102 4.102 21 N -0.251 5.251 22 C -0.097 4.097 23 C 0.082 3.918 24 C -0.234 4.234 25 C -0.193 4.193 26 O -0.362 6.362 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.225 0.775 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.034 0.966 36 H 0.039 0.961 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.112 0.888 40 H 0.051 0.949 41 H 0.145 0.855 42 H 0.053 0.947 43 H 0.104 0.896 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.075 0.925 47 H 0.098 0.902 48 H 0.075 0.925 49 H 0.087 0.913 50 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -12.149 -9.021 27.324 31.234 hybrid contribution -1.539 1.843 -0.229 2.412 sum -13.688 -7.178 27.095 31.193 Atomic orbital electron populations 1.21873 0.93633 1.02870 1.02173 1.22034 0.95584 0.95931 0.90766 0.93658 1.21694 0.80588 1.00935 0.96865 1.47370 1.05639 1.67507 1.17066 1.15947 0.85047 0.78477 0.80080 1.90886 1.13249 1.62230 1.80715 1.45687 1.10342 1.62247 1.21673 1.21369 0.92612 0.97439 0.86088 1.19789 0.96428 0.95716 0.93941 1.20921 0.94931 1.37531 1.02552 0.90570 1.25002 0.98040 0.94836 0.95448 1.69906 1.35156 1.39117 1.09527 0.86750 0.86138 0.78859 0.77307 1.20282 1.21279 1.19091 1.21692 0.99298 0.96698 0.81348 1.23241 0.86537 1.00060 1.00330 1.62089 1.07289 1.54693 1.01011 1.22842 0.99775 0.96924 0.90140 1.21312 0.82370 0.95455 0.92625 1.22441 1.01094 1.01710 0.98138 1.21818 1.02743 0.91537 1.03181 1.86615 1.27632 1.25732 1.96268 0.91400 0.92361 0.91710 0.90137 0.90736 0.77542 0.92064 0.92319 0.96605 0.96060 0.92576 0.91616 0.88788 0.94859 0.85531 0.94740 0.89628 0.91419 0.91482 0.92455 0.90212 0.92543 0.91302 0.77883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 8.74 37.15 0.32 -0.70 16 2 C 0.07 0.61 2.56 -67.59 -0.17 0.43 16 3 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 4 C 0.12 1.32 5.88 -3.60 -0.02 1.30 16 5 N -0.64 -8.89 3.00 -177.92 -0.53 -9.43 16 6 C 0.70 12.82 8.31 -86.92 -0.72 12.09 16 7 O -0.59 -13.13 15.83 5.30 0.08 -13.05 16 8 N -0.74 -13.26 5.47 -65.23 -0.36 -13.62 16 9 C 0.15 3.16 5.62 -4.05 -0.02 3.14 16 10 C -0.02 -0.49 4.15 -27.89 -0.12 -0.60 16 11 C -0.52 -14.78 9.66 -34.44 -0.33 -15.11 16 12 H 0.08 2.35 7.99 -52.48 -0.42 1.93 16 13 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 14 N -0.90 -27.54 13.96 55.43 0.77 -26.76 16 15 Si 0.88 21.14 27.47 -169.99 -4.67 16.47 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 19 C 0.13 1.65 6.61 -3.37 -0.02 1.63 16 20 C 0.03 0.26 3.67 -3.47 -0.01 0.25 16 21 N -0.53 -4.53 3.94 -226.06 -0.89 -5.42 16 22 C 0.03 0.21 3.64 -3.83 -0.01 0.20 16 23 C 0.12 0.77 0.98 -90.62 -0.09 0.68 16 24 C -0.18 -0.84 8.80 37.16 0.33 -0.52 16 25 C -0.14 -0.91 8.26 37.16 0.31 -0.60 16 26 O -0.56 -4.02 9.63 -35.23 -0.34 -4.36 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.36 6.58 -51.93 -0.34 0.02 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.83 5.63 -51.93 -0.29 0.54 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.39 5.89 5.97 -40.82 -0.24 5.64 16 33 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.02 0.35 7.58 -51.93 -0.39 -0.04 16 36 H 0.02 0.49 7.19 -51.93 -0.37 0.11 16 37 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.09 1.34 7.09 -51.93 -0.37 0.97 16 40 H 0.03 0.39 8.10 -51.93 -0.42 -0.04 16 41 H 0.13 1.22 3.64 -51.93 -0.19 1.03 16 42 H 0.03 0.24 8.06 -51.93 -0.42 -0.18 16 43 H 0.09 0.52 6.91 -51.93 -0.36 0.16 16 44 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 47 H 0.08 0.64 5.73 -51.93 -0.30 0.35 16 48 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 49 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.37 1.79 9.05 45.56 0.41 2.20 16 LS Contribution 377.93 15.07 5.70 5.70 Total: -1.00 -33.71 377.93 -8.85 -42.55 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -7.95 Total: 3.86 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -0.66 Total: 4.05 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: -1.01 Total: -55.23 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.26 Total: -17.40 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.67 Total: 16.47 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.71 -8.85 -42.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436329552.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.753 kcal (2) G-P(sol) polarization free energy of solvation -33.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds