Wall clock time and date at job start Fri Apr 10 2020 18:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.49903 * 2 1 4 4 C 1.53239 * 109.49494 * 239.94382 * 2 1 3 5 5 N 1.47081 * 108.52121 * 186.21084 * 4 2 1 6 6 C 1.34776 * 120.88541 * 231.18584 * 5 4 2 7 7 O 1.21578 * 120.00584 * 184.99891 * 6 5 4 8 8 N 1.34778 * 119.99611 * 4.99920 * 6 5 4 9 9 C 1.46497 * 120.00405 * 174.99718 * 8 6 5 10 10 C 1.52994 * 109.47578 * 179.97438 * 9 8 6 11 11 C 1.50700 * 109.47359 * 179.97438 * 10 9 8 12 12 H 1.08005 * 119.99739 * 0.02562 * 11 10 9 13 13 C 1.37874 * 120.00383 * 179.72562 * 11 10 9 14 14 N 1.31520 * 120.00362 * 180.27559 * 13 11 10 15 15 Si 1.86803 * 119.99786 * 0.27984 * 13 11 10 16 16 H 1.48500 * 109.47133 * 89.99645 * 15 13 11 17 17 H 1.48500 * 109.46896 * 209.99791 * 15 13 11 18 18 H 1.48507 * 109.46949 * 329.99649 * 15 13 11 19 19 C 1.47080 * 118.23826 * 51.45547 * 5 4 2 20 20 C 1.53690 * 108.27966 * 308.48649 * 19 5 4 21 21 N 1.46901 * 109.25674 * 54.07768 * 20 19 5 22 22 C 1.46906 * 110.99747 * 172.61016 * 21 20 19 23 23 C 1.52991 * 109.47314 * 315.53325 * 22 21 20 24 24 C 1.53000 * 109.47252 * 189.07464 * 23 22 21 25 25 C 1.53004 * 109.47529 * 309.08088 * 23 22 21 26 26 O 1.42899 * 109.46760 * 69.07918 * 23 22 21 27 27 H 1.09001 * 109.47422 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47387 * 300.05972 * 1 2 3 29 29 H 1.09000 * 109.46863 * 60.05534 * 1 2 3 30 30 H 1.08996 * 109.63115 * 66.50551 * 4 2 1 31 31 H 1.08992 * 109.62726 * 305.91654 * 4 2 1 32 32 H 0.97006 * 120.00090 * 354.99442 * 8 6 5 33 33 H 1.09001 * 109.47055 * 59.99652 * 9 8 6 34 34 H 1.08999 * 109.46987 * 300.00252 * 9 8 6 35 35 H 1.09005 * 109.46726 * 60.00631 * 10 9 8 36 36 H 1.08999 * 109.47444 * 300.00311 * 10 9 8 37 37 H 0.96994 * 119.99839 * 180.02562 * 14 13 11 38 38 H 1.09004 * 109.62709 * 68.25088 * 19 5 4 39 39 H 1.08996 * 109.63316 * 188.83027 * 19 5 4 40 40 H 1.09000 * 109.64714 * 294.07940 * 20 19 5 41 41 H 1.09000 * 109.44484 * 173.95867 * 20 19 5 42 42 H 1.08994 * 109.47006 * 75.54481 * 22 21 20 43 43 H 1.09003 * 109.46724 * 195.53590 * 22 21 20 44 44 H 1.09004 * 109.46695 * 60.00875 * 24 23 22 45 45 H 1.09002 * 109.47230 * 179.97438 * 24 23 22 46 46 H 1.08994 * 109.47278 * 300.00738 * 24 23 22 47 47 H 1.08995 * 109.46845 * 60.00023 * 25 23 22 48 48 H 1.09004 * 109.47065 * 179.97438 * 25 23 22 49 49 H 1.08994 * 109.46679 * 300.00028 * 25 23 22 50 50 H 0.96698 * 114.00513 * 60.00333 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7235 -1.2503 5 7 3.5042 -0.8429 -1.1555 6 6 4.2978 -0.4486 -2.1709 7 8 5.4974 -0.6377 -2.1137 8 7 3.7615 0.1554 -3.2498 9 6 4.6328 0.6822 -4.3031 10 6 3.7780 1.3120 -5.4047 11 6 4.6743 1.8544 -6.4879 12 1 5.7465 1.7591 -6.3996 13 6 4.1255 2.4669 -7.5945 14 7 4.9076 2.9355 -8.5424 15 14 2.2710 2.6313 -7.7474 16 1 1.8350 3.9102 -7.1316 17 1 1.8896 2.6175 -9.1826 18 1 1.6143 1.4966 -7.0497 19 6 4.0778 -1.4097 0.0746 20 6 3.4866 -0.6539 1.2750 21 7 2.0201 -0.6940 1.1983 22 6 1.4139 -0.1363 2.4147 23 6 2.1442 -0.6804 3.6441 24 6 1.3791 -0.2844 4.9085 25 6 2.2271 -2.2056 3.5546 26 8 3.4635 -0.1338 3.6950 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5147 0.8894 29 1 -0.3633 0.5130 -0.8905 30 1 1.7777 -0.1499 -2.1388 31 1 1.5958 -1.7166 -1.3065 32 1 2.7985 0.2412 -3.3290 33 1 5.2262 -0.1297 -4.7237 34 1 5.2967 1.4369 -3.8817 35 1 3.1844 2.1239 -4.9844 36 1 3.1143 0.5569 -5.8260 37 1 4.5214 3.3667 -9.3207 38 1 3.8242 -2.4676 0.1432 39 1 5.1612 -1.2901 0.0624 40 1 3.8234 0.3827 1.2575 41 1 3.8156 -1.1276 2.1999 42 1 1.4947 0.9505 2.3954 43 1 0.3629 -0.4217 2.4605 44 1 0.3727 -0.7014 4.8697 45 1 1.8991 -0.6725 5.7844 46 1 1.3200 0.8020 4.9722 47 1 2.7722 -2.4875 2.6539 48 1 2.7478 -2.5931 4.4304 49 1 1.2207 -2.6224 3.5158 50 1 3.4876 0.8311 3.7527 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000436329552.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:33 Heat of formation + Delta-G solvation = -87.438813 kcal Electronic energy + Delta-G solvation = -27600.990862 eV Core-core repulsion = 23855.719394 eV Total energy + Delta-G solvation = -3745.271469 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.66506 -40.42241 -38.32584 -36.74184 -35.53330 -34.82277 -33.58096 -33.10568 -31.84956 -29.39727 -28.26209 -27.79570 -26.76014 -25.31565 -23.70222 -22.62583 -21.84509 -21.14333 -20.49894 -19.21678 -18.98239 -17.86827 -17.21640 -16.84512 -16.74361 -16.42874 -16.27738 -15.84921 -15.62518 -15.51138 -15.33592 -14.92806 -14.59210 -14.46118 -14.24932 -13.84392 -13.40638 -13.31745 -13.11348 -13.07683 -13.00404 -12.95470 -12.77703 -12.59068 -12.49785 -12.38946 -12.17590 -12.17039 -12.00106 -11.97345 -11.76012 -11.52936 -11.45606 -11.22564 -10.78933 -10.53556 -10.22073 -9.60344 -9.20392 -8.29916 -6.37546 1.38690 1.42048 1.53325 1.59636 2.07875 2.37109 2.83167 2.92280 3.04768 3.30864 3.75751 3.77700 3.94527 4.01342 4.10586 4.14574 4.25145 4.27700 4.36294 4.42149 4.49871 4.51253 4.60893 4.73022 4.74802 4.76148 4.80499 4.92265 4.96803 4.97302 4.99815 5.07262 5.09716 5.11799 5.23230 5.30619 5.36463 5.39212 5.41063 5.48020 5.52806 5.65289 5.85006 6.06359 6.14371 6.22813 6.69199 6.82114 6.94842 7.26763 7.51615 8.86922 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.024067 B = 0.002734 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.162984 B =10239.426412 C =10902.277962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.069 3.931 3 H 0.029 0.971 4 C 0.117 3.883 5 N -0.629 5.629 6 C 0.698 3.302 7 O -0.640 6.640 8 N -0.733 5.733 9 C 0.164 3.836 10 C -0.009 4.009 11 C -0.539 4.539 12 H 0.028 0.972 13 C 0.003 3.997 14 N -0.950 5.950 15 Si 0.961 3.039 16 H -0.264 1.264 17 H -0.286 1.286 18 H -0.236 1.236 19 C 0.129 3.871 20 C 0.043 3.957 21 N -0.523 5.523 22 C 0.033 3.967 23 C 0.123 3.877 24 C -0.170 4.170 25 C -0.136 4.136 26 O -0.572 6.572 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.406 0.594 33 H 0.040 0.960 34 H 0.039 0.961 35 H 0.035 0.965 36 H 0.037 0.963 37 H 0.268 0.732 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.016 0.984 41 H 0.134 0.866 42 H 0.035 0.965 43 H 0.101 0.899 44 H 0.078 0.922 45 H 0.062 0.938 46 H 0.063 0.937 47 H 0.064 0.936 48 H 0.053 0.947 49 H 0.080 0.920 50 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.343 -8.242 29.345 35.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.040 4.040 3 H 0.047 0.953 4 C -0.006 4.006 5 N -0.366 5.366 6 C 0.399 3.601 7 O -0.522 6.522 8 N -0.390 5.390 9 C 0.040 3.960 10 C -0.047 4.047 11 C -0.578 4.578 12 H 0.046 0.954 13 C -0.194 4.194 14 N -0.590 5.590 15 Si 0.783 3.217 16 H -0.189 1.189 17 H -0.212 1.212 18 H -0.159 1.159 19 C 0.006 3.994 20 C -0.085 4.085 21 N -0.248 5.248 22 C -0.094 4.094 23 C 0.082 3.918 24 C -0.228 4.228 25 C -0.193 4.193 26 O -0.381 6.381 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.105 0.895 31 H 0.108 0.892 32 H 0.244 0.756 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.077 0.923 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.034 0.966 41 H 0.152 0.848 42 H 0.054 0.946 43 H 0.120 0.880 44 H 0.097 0.903 45 H 0.081 0.919 46 H 0.082 0.918 47 H 0.083 0.917 48 H 0.072 0.928 49 H 0.099 0.901 50 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -16.452 -9.390 29.144 34.759 hybrid contribution -0.115 1.924 -0.724 2.059 sum -16.567 -7.465 28.420 33.733 Atomic orbital electron populations 1.21832 0.91314 1.03590 1.03086 1.22017 0.97255 0.94655 0.90120 0.95275 1.22005 0.78145 1.02252 0.98201 1.47429 1.06967 1.66108 1.16075 1.16118 0.84777 0.78440 0.80737 1.90854 1.15572 1.64028 1.81706 1.45304 1.10736 1.62117 1.20872 1.20888 0.92469 0.96180 0.86488 1.19624 0.95835 0.96431 0.92808 1.21228 0.93699 1.38195 1.04660 0.95390 1.26102 1.04557 0.94067 0.94646 1.70080 1.38120 1.40347 1.10489 0.85519 0.78277 0.80293 0.77661 1.18886 1.21202 1.15897 1.21815 0.98165 0.97775 0.81598 1.23055 0.87717 0.98561 0.99217 1.62110 1.06042 1.54846 1.01833 1.22915 1.00405 0.96931 0.89175 1.21361 0.82129 0.95080 0.93189 1.22380 1.01280 1.02214 0.96954 1.21814 1.03161 0.92011 1.02277 1.86573 1.28486 1.26762 1.96292 0.90711 0.91268 0.91072 0.89466 0.89195 0.75550 0.94170 0.94221 0.94636 0.94485 0.92301 0.90331 0.91269 0.96604 0.84841 0.94634 0.88046 0.90340 0.91913 0.91771 0.91708 0.92808 0.90148 0.76762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 8.74 71.98 0.63 -0.79 16 2 C 0.07 1.08 2.56 44.99 0.11 1.20 16 3 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 4 C 0.12 2.21 5.88 86.35 0.51 2.72 16 5 N -0.63 -17.04 3.00 -835.08 -2.51 -19.55 16 6 C 0.70 25.51 8.31 179.05 1.49 27.00 16 7 O -0.64 -29.36 15.83 -3.96 -0.06 -29.43 16 8 N -0.73 -25.54 5.47 -478.56 -2.62 -28.15 16 9 C 0.16 7.12 5.62 86.38 0.49 7.61 16 10 C -0.01 -0.42 4.15 29.85 0.12 -0.29 16 11 C -0.54 -31.31 9.66 25.60 0.25 -31.07 16 12 H 0.03 1.82 7.99 -2.91 -0.02 1.80 16 13 C 0.00 0.19 5.47 84.65 0.46 0.66 16 14 N -0.95 -59.71 13.96 21.45 0.30 -59.41 16 15 Si 0.96 42.34 27.47 68.60 1.88 44.23 16 16 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 17 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 18 H -0.24 -9.20 6.54 99.48 0.65 -8.55 16 19 C 0.13 3.18 6.61 86.50 0.57 3.75 16 20 C 0.04 0.82 3.67 86.54 0.32 1.14 16 21 N -0.52 -7.84 3.94 -869.12 -3.42 -11.26 16 22 C 0.03 0.36 3.64 86.30 0.31 0.67 16 23 C 0.12 1.27 0.98 -10.80 -0.01 1.26 16 24 C -0.17 -1.20 8.80 71.98 0.63 -0.57 16 25 C -0.14 -1.56 8.26 71.98 0.59 -0.97 16 26 O -0.57 -7.57 9.63 -148.98 -1.43 -9.00 16 27 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.07 0.58 6.58 -2.39 -0.02 0.56 16 29 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.09 1.53 5.63 -2.39 -0.01 1.52 16 31 H 0.09 1.49 8.14 -2.39 -0.02 1.48 16 32 H 0.41 11.29 5.97 -92.70 -0.55 10.73 16 33 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.04 1.49 7.58 -2.38 -0.02 1.48 16 36 H 0.04 1.59 7.19 -2.39 -0.02 1.57 16 37 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 38 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.07 2.06 7.09 -2.39 -0.02 2.04 16 40 H 0.02 0.36 8.10 -2.39 -0.02 0.34 16 41 H 0.13 2.47 3.64 -2.39 -0.01 2.46 16 42 H 0.04 0.40 8.06 -2.39 -0.02 0.38 16 43 H 0.10 0.82 6.91 -2.39 -0.02 0.80 16 44 H 0.08 0.40 8.14 -2.38 -0.02 0.38 16 45 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 47 H 0.06 0.94 5.73 -2.39 -0.01 0.93 16 48 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 49 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 50 H 0.38 3.21 9.05 -74.06 -0.67 2.54 16 Total: -1.00 -75.97 377.93 -1.73 -77.70 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: -0.34 Total: 22.56 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: 6.48 Total: 12.32 kcal Atomic # 7 Polarization: -110.13 SS G_CDS: -8.25 Total: -118.37 kcal Atomic # 8 Polarization: -36.93 SS G_CDS: -1.50 Total: -38.43 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 1.88 Total: 44.23 kcal Total: -75.97 -1.73 -77.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436329552.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.742 kcal (2) G-P(sol) polarization free energy of solvation -75.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds