Wall clock time and date at job start Fri Apr 10 2020 18:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.49547 * 2 1 4 4 C 1.53235 * 109.49573 * 120.05343 * 2 1 3 5 5 N 1.47077 * 108.52287 * 173.81455 * 4 2 1 6 6 C 1.34776 * 120.88068 * 128.81699 * 5 4 2 7 7 O 1.21582 * 120.00373 * 4.95304 * 6 5 4 8 8 N 1.34783 * 119.99758 * 184.95571 * 6 5 4 9 9 C 1.46508 * 119.99561 * 175.07034 * 8 6 5 10 10 C 1.53001 * 109.46771 * 179.97438 * 9 8 6 11 11 C 1.50702 * 109.46966 * 179.97438 * 10 9 8 12 12 H 1.07998 * 120.00103 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99560 * 179.97438 * 11 10 9 14 14 N 1.31518 * 119.99441 * 180.02562 * 13 11 10 15 15 Si 1.86791 * 120.00583 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47524 * 89.99480 * 15 13 11 17 17 H 1.48500 * 109.47220 * 209.99744 * 15 13 11 18 18 H 1.48500 * 109.47187 * 329.99668 * 15 13 11 19 19 C 1.47078 * 118.23758 * 309.08889 * 5 4 2 20 20 C 1.52786 * 108.76675 * 50.84978 * 19 5 4 21 21 N 1.46894 * 109.42005 * 306.42679 * 20 19 5 22 22 C 1.46908 * 110.99808 * 187.11098 * 21 20 19 23 23 C 1.53001 * 109.46854 * 121.11576 * 22 21 20 24 24 C 1.52999 * 109.47075 * 186.01478 * 23 22 21 25 25 C 1.52992 * 109.47243 * 306.01729 * 23 22 21 26 26 O 1.42901 * 109.46884 * 66.01816 * 23 22 21 27 27 H 1.08998 * 109.47207 * 299.86413 * 1 2 3 28 28 H 1.08996 * 109.47689 * 59.86427 * 1 2 3 29 29 H 1.09007 * 109.47142 * 179.86837 * 1 2 3 30 30 H 1.09003 * 109.62656 * 54.10596 * 4 2 1 31 31 H 1.09001 * 109.79121 * 293.62136 * 4 2 1 32 32 H 0.96992 * 120.00186 * 355.07126 * 8 6 5 33 33 H 1.08997 * 109.47244 * 60.00196 * 9 8 6 34 34 H 1.09000 * 109.46863 * 300.00021 * 9 8 6 35 35 H 1.09007 * 109.46943 * 59.99907 * 10 9 8 36 36 H 1.08992 * 109.47348 * 300.00351 * 10 9 8 37 37 H 0.97003 * 119.99679 * 180.02562 * 14 13 11 38 38 H 1.09000 * 109.63122 * 170.61696 * 19 5 4 39 39 H 1.08997 * 109.62949 * 291.19950 * 19 5 4 40 40 H 1.08995 * 109.56634 * 186.36549 * 20 19 5 41 41 H 1.09002 * 109.35573 * 66.35129 * 20 19 5 42 42 H 1.08999 * 109.46872 * 241.11818 * 22 21 20 43 43 H 1.08997 * 109.46902 * 1.11487 * 22 21 20 44 44 H 1.09001 * 109.46876 * 59.99884 * 24 23 22 45 45 H 1.08999 * 109.47397 * 180.02562 * 24 23 22 46 46 H 1.09001 * 109.47399 * 300.00823 * 24 23 22 47 47 H 1.09004 * 109.47662 * 65.60628 * 25 23 22 48 48 H 1.09006 * 109.47310 * 185.60488 * 25 23 22 49 49 H 1.08999 * 109.47547 * 305.60041 * 25 23 22 50 50 H 0.96702 * 114.00176 * 60.00105 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0414 -0.7234 1.2503 5 7 3.5043 -0.8423 1.1558 6 6 4.2974 -0.4478 2.1715 7 8 3.8042 -0.0709 3.2169 8 7 5.6374 -0.4712 2.0284 9 6 6.4968 0.0582 3.0903 10 6 7.9634 -0.0879 2.6797 11 6 8.8475 0.4572 3.7717 12 1 8.4073 0.8665 4.6690 13 6 10.2182 0.4325 3.6256 14 7 10.9897 0.9078 4.5788 15 14 10.9796 -0.2760 2.0741 16 1 11.1405 0.8015 1.0649 17 1 12.3085 -0.8560 2.3950 18 1 10.0953 -1.3369 1.5286 19 6 4.0790 -1.3975 -0.0790 20 6 3.4871 -0.6530 -1.2747 21 7 2.0207 -0.6937 -1.1983 22 6 1.4144 -0.1361 -2.4147 23 6 0.5292 -1.1952 -3.0749 24 6 0.0178 -0.6678 -4.4170 25 6 1.3439 -2.4696 -3.3046 26 8 -0.5808 -1.4863 -2.2233 27 1 -0.3633 0.5117 0.8912 28 1 -0.3634 0.5159 -0.8887 29 1 -0.3634 -1.0277 -0.0024 30 1 1.5961 -1.7168 1.3064 31 1 1.7771 -0.1530 2.1408 32 1 6.0327 -0.8384 1.2224 33 1 6.3206 -0.4976 4.0112 34 1 6.2675 1.1115 3.2520 35 1 8.1399 0.4676 1.7585 36 1 8.1924 -1.1412 2.5182 37 1 11.9541 0.8907 4.4759 38 1 5.1614 -1.2695 -0.0690 39 1 3.8334 -2.4569 -0.1531 40 1 3.8165 -1.1269 -2.1993 41 1 3.8235 0.3837 -1.2574 42 1 0.8093 0.7321 -2.1538 43 1 2.2005 0.1639 -3.1077 44 1 0.8645 -0.4457 -5.0665 45 1 -0.6132 -1.4221 -4.8871 46 1 -0.5625 0.2402 -4.2534 47 1 1.6241 -2.9001 -2.3432 48 1 0.7444 -3.1883 -3.8635 49 1 2.2435 -2.2288 -3.8709 50 1 -1.1426 -0.7222 -2.0344 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000436329553.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:36 Heat of formation + Delta-G solvation = -92.919279 kcal Electronic energy + Delta-G solvation = -27482.940862 eV Core-core repulsion = 23737.431742 eV Total energy + Delta-G solvation = -3745.509119 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.60800 -40.19284 -38.27998 -36.70645 -35.57745 -34.78151 -33.96136 -32.68918 -31.93307 -29.32101 -28.22642 -27.97200 -26.59603 -25.15063 -23.92646 -22.73189 -21.85080 -20.89276 -20.53314 -19.18340 -18.98010 -17.62969 -17.44090 -16.82880 -16.71552 -16.28690 -15.97386 -15.78136 -15.61865 -15.52318 -15.36048 -15.09986 -14.75231 -14.57954 -14.07739 -13.77544 -13.48532 -13.35118 -13.10985 -13.04787 -12.92270 -12.89373 -12.82965 -12.51410 -12.41932 -12.18000 -12.16807 -12.06601 -12.03086 -11.87374 -11.75762 -11.53119 -11.48169 -11.19165 -10.78773 -10.74754 -10.23931 -9.60551 -9.14809 -8.29802 -6.37335 1.38957 1.42277 1.53499 1.58338 2.07724 2.37267 2.77450 2.92926 3.05025 3.51840 3.78206 3.87051 3.91747 4.04808 4.15544 4.20757 4.23207 4.29291 4.33397 4.41030 4.43355 4.53128 4.61001 4.65981 4.72573 4.73673 4.80891 4.82979 4.94141 4.96694 5.02412 5.08922 5.12238 5.14241 5.24232 5.33831 5.39558 5.39825 5.42134 5.48636 5.57115 5.65460 5.85466 6.09318 6.13830 6.22981 6.69531 6.95000 7.02844 7.26989 7.51558 8.87044 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.023235 B = 0.002671 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.809938 B =10479.582232 C =11342.987905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.078 3.922 3 H 0.027 0.973 4 C 0.141 3.859 5 N -0.629 5.629 6 C 0.699 3.301 7 O -0.639 6.639 8 N -0.732 5.732 9 C 0.164 3.836 10 C -0.010 4.010 11 C -0.539 4.539 12 H 0.028 0.972 13 C 0.003 3.997 14 N -0.951 5.951 15 Si 0.961 3.039 16 H -0.264 1.264 17 H -0.287 1.287 18 H -0.236 1.236 19 C 0.111 3.889 20 C 0.044 3.956 21 N -0.522 5.522 22 C 0.025 3.975 23 C 0.138 3.862 24 C -0.176 4.176 25 C -0.128 4.128 26 O -0.566 6.566 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.407 0.593 33 H 0.039 0.961 34 H 0.040 0.960 35 H 0.036 0.964 36 H 0.037 0.963 37 H 0.268 0.732 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.112 0.888 41 H 0.030 0.970 42 H 0.067 0.933 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.060 0.940 46 H 0.064 0.936 47 H 0.059 0.941 48 H 0.047 0.953 49 H 0.072 0.928 50 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.565 -5.449 -24.734 34.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.032 4.032 3 H 0.045 0.955 4 C 0.017 3.983 5 N -0.366 5.366 6 C 0.400 3.600 7 O -0.522 6.522 8 N -0.390 5.390 9 C 0.040 3.960 10 C -0.047 4.047 11 C -0.578 4.578 12 H 0.046 0.954 13 C -0.194 4.194 14 N -0.591 5.591 15 Si 0.783 3.217 16 H -0.189 1.189 17 H -0.213 1.213 18 H -0.159 1.159 19 C -0.012 4.012 20 C -0.084 4.084 21 N -0.246 5.246 22 C -0.103 4.103 23 C 0.097 3.903 24 C -0.234 4.234 25 C -0.185 4.185 26 O -0.374 6.374 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.245 0.755 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.077 0.923 38 H 0.109 0.891 39 H 0.106 0.894 40 H 0.130 0.870 41 H 0.048 0.952 42 H 0.085 0.915 43 H 0.093 0.907 44 H 0.090 0.910 45 H 0.079 0.921 46 H 0.083 0.917 47 H 0.079 0.921 48 H 0.066 0.934 49 H 0.091 0.909 50 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -23.604 -6.218 -23.905 34.165 hybrid contribution 0.994 1.384 -0.044 1.705 sum -22.610 -4.834 -23.949 33.288 Atomic orbital electron populations 1.21990 0.91707 1.03787 1.02207 1.21947 0.97175 0.94216 0.89822 0.95513 1.21614 0.77500 1.01259 0.97884 1.47374 1.06758 1.66426 1.16026 1.16093 0.81885 0.78433 0.83543 1.90857 1.75032 1.57052 1.29212 1.45299 1.03959 1.66579 1.23134 1.20889 0.89459 0.96825 0.88836 1.19627 0.90742 0.97781 0.96584 1.21232 0.91903 1.40839 1.03789 0.95378 1.26101 0.97590 0.95036 1.00663 1.70083 1.05089 1.47902 1.35983 0.85515 0.77762 0.79903 0.78554 1.18870 1.21269 1.15904 1.21871 0.98173 0.98971 0.82176 1.22543 0.87833 0.99018 0.99043 1.61895 1.05622 1.55421 1.01700 1.22987 0.99115 0.96641 0.91540 1.21193 0.85895 0.94942 0.88248 1.22460 1.02193 1.01640 0.97122 1.21590 0.98920 0.96029 1.01981 1.86637 1.40714 1.40102 1.69982 0.92109 0.90790 0.90305 0.90621 0.91048 0.75474 0.94207 0.94150 0.94582 0.94510 0.92316 0.89141 0.89447 0.86951 0.95214 0.91461 0.90682 0.90954 0.92063 0.91702 0.92143 0.93365 0.90877 0.77298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 7.51 71.98 0.54 -1.22 16 2 C 0.08 1.36 2.45 44.99 0.11 1.47 16 3 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 4 C 0.14 3.30 5.87 86.35 0.51 3.81 16 5 N -0.63 -16.39 3.02 -836.83 -2.52 -18.91 16 6 C 0.70 24.85 8.31 179.05 1.49 26.34 16 7 O -0.64 -28.71 15.83 -3.97 -0.06 -28.78 16 8 N -0.73 -24.87 5.47 -478.51 -2.62 -27.49 16 9 C 0.16 7.02 5.62 86.38 0.49 7.51 16 10 C -0.01 -0.43 4.16 29.85 0.12 -0.30 16 11 C -0.54 -31.11 9.66 25.60 0.25 -30.86 16 12 H 0.03 1.82 7.99 -2.91 -0.02 1.80 16 13 C 0.00 0.18 5.47 84.65 0.46 0.64 16 14 N -0.95 -59.55 13.96 21.45 0.30 -59.25 16 15 Si 0.96 42.18 27.47 68.60 1.88 44.07 16 16 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 17 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 18 H -0.24 -9.17 6.54 99.48 0.65 -8.52 16 19 C 0.11 1.96 6.56 86.20 0.57 2.53 16 20 C 0.04 0.63 5.29 86.23 0.46 1.08 16 21 N -0.52 -7.45 3.39 -870.97 -2.95 -10.40 16 22 C 0.03 0.26 4.08 86.30 0.35 0.61 16 23 C 0.14 1.43 1.18 -10.80 -0.01 1.41 16 24 C -0.18 -1.30 8.81 71.98 0.63 -0.66 16 25 C -0.13 -1.51 8.51 71.98 0.61 -0.90 16 26 O -0.57 -7.18 10.79 -148.98 -1.61 -8.78 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.07 0.64 4.75 -2.39 -0.01 0.63 16 29 H 0.08 1.10 6.97 -2.38 -0.02 1.09 16 30 H 0.08 1.69 8.14 -2.39 -0.02 1.68 16 31 H 0.07 2.01 7.09 -2.39 -0.02 1.99 16 32 H 0.41 10.91 5.97 -92.71 -0.55 10.36 16 33 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.04 1.50 7.57 -2.38 -0.02 1.48 16 36 H 0.04 1.56 7.20 -2.39 -0.02 1.54 16 37 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 38 H 0.09 1.44 5.64 -2.39 -0.01 1.43 16 39 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.11 1.06 8.05 -2.39 -0.02 1.04 16 41 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 42 H 0.07 0.64 5.87 -2.39 -0.01 0.63 16 43 H 0.07 0.67 7.50 -2.39 -0.02 0.65 16 44 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 45 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 46 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 47 H 0.06 0.93 7.65 -2.38 -0.02 0.92 16 48 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 49 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 50 H 0.38 2.72 6.99 -74.06 -0.52 2.20 16 Total: -1.00 -76.03 379.42 -1.20 -77.23 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: -0.20 Total: 20.87 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: 6.57 Total: 11.45 kcal Atomic # 7 Polarization: -108.26 SS G_CDS: -7.79 Total: -116.05 kcal Atomic # 8 Polarization: -35.89 SS G_CDS: -1.67 Total: -37.56 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 1.88 Total: 44.07 kcal Total: -76.03 -1.20 -77.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436329553.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.692 kcal (2) G-P(sol) polarization free energy of solvation -76.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds