Wall clock time and date at job start Fri Apr 10 2020 18:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47387 * 2 1 4 4 O 1.42898 * 109.47095 * 120.00514 * 2 1 3 5 5 C 1.53001 * 109.47303 * 240.00308 * 2 1 3 6 6 N 1.46895 * 109.47549 * 179.97438 * 5 2 1 7 7 C 1.46899 * 111.00344 * 189.99782 * 6 5 2 8 8 C 1.53242 * 109.34172 * 187.25408 * 7 6 5 9 9 N 1.47081 * 108.51807 * 306.17193 * 8 7 6 10 10 C 1.34779 * 120.88150 * 231.18419 * 9 8 7 11 11 O 1.21585 * 120.00123 * 184.99295 * 10 9 8 12 12 N 1.34780 * 119.99551 * 4.71850 * 10 9 8 13 13 C 1.46502 * 119.99514 * 175.19705 * 12 10 9 14 14 C 1.53006 * 109.46790 * 180.02562 * 13 12 10 15 15 C 1.53003 * 109.46718 * 299.99562 * 14 13 12 16 16 C 1.52998 * 109.47413 * 59.99812 * 14 13 12 17 17 C 1.50705 * 109.47000 * 179.97438 * 14 13 12 18 18 H 1.07997 * 119.99997 * 359.97438 * 17 14 13 19 19 C 1.37870 * 119.99866 * 179.97438 * 17 14 13 20 20 N 1.31519 * 120.00169 * 359.97438 * 19 17 14 21 21 Si 1.86801 * 120.00188 * 179.97438 * 19 17 14 22 22 H 1.48504 * 109.47078 * 59.99432 * 21 19 17 23 23 H 1.48499 * 109.47498 * 179.97438 * 21 19 17 24 24 H 1.48509 * 109.46729 * 300.00145 * 21 19 17 25 25 C 1.47082 * 118.23896 * 51.45866 * 9 8 7 26 26 C 1.46904 * 110.99880 * 314.30270 * 6 5 2 27 27 H 1.09000 * 109.47155 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47023 * 299.99646 * 1 2 3 29 29 H 1.09000 * 109.47041 * 59.99950 * 1 2 3 30 30 H 0.96696 * 114.00374 * 59.99950 * 4 2 1 31 31 H 1.09000 * 109.47283 * 59.99890 * 5 2 1 32 32 H 1.09000 * 109.47156 * 300.00172 * 5 2 1 33 33 H 1.09005 * 109.48941 * 67.29367 * 7 6 5 34 34 H 1.08992 * 109.51517 * 307.22938 * 7 6 5 35 35 H 1.08994 * 109.62744 * 186.46626 * 8 7 6 36 36 H 1.08999 * 109.79031 * 65.97170 * 8 7 6 37 37 H 0.96992 * 120.00449 * 355.19226 * 12 10 9 38 38 H 1.08998 * 109.46951 * 299.99161 * 13 12 10 39 39 H 1.08998 * 109.47956 * 59.99892 * 13 12 10 40 40 H 1.09000 * 109.46929 * 60.00480 * 15 14 13 41 41 H 1.09006 * 109.46892 * 180.02562 * 15 14 13 42 42 H 1.08998 * 109.47159 * 299.99597 * 15 14 13 43 43 H 1.08992 * 109.47163 * 59.99546 * 16 14 13 44 44 H 1.08998 * 109.47343 * 180.02562 * 16 14 13 45 45 H 1.09001 * 109.46820 * 299.99849 * 16 14 13 46 46 H 0.97000 * 119.99828 * 179.97438 * 20 19 17 47 47 H 1.09005 * 109.62646 * 68.24926 * 25 9 8 48 48 H 1.09000 * 109.62894 * 188.83127 * 25 9 8 49 49 H 1.08993 * 109.48933 * 292.70090 * 26 6 5 50 50 H 1.08998 * 109.49117 * 52.76010 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.0400 -0.7212 -1.2493 6 7 3.5090 -0.7207 -1.2496 7 6 4.0353 -1.1897 -2.5384 8 6 5.5564 -1.3470 -2.4384 9 7 6.1265 -0.0791 -1.9581 10 6 7.1448 0.5135 -2.6126 11 8 7.6640 1.5121 -2.1527 12 7 7.5912 -0.0041 -3.7743 13 6 8.6256 0.6970 -4.5389 14 6 8.9489 -0.0968 -5.8064 15 6 9.4545 -1.4886 -5.4213 16 6 7.6864 -0.2310 -6.6601 17 6 10.0126 0.6246 -6.5933 18 1 10.4172 1.5563 -6.2264 19 6 10.4691 0.0952 -7.7817 20 7 9.9767 -1.0396 -8.2282 21 14 11.7870 0.9898 -8.7575 22 1 13.0125 1.1217 -7.9292 23 1 12.1018 0.2187 -9.9870 24 1 11.2949 2.3400 -9.1318 25 6 5.5601 0.5218 -0.7409 26 6 4.0350 0.6085 -0.9111 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.7210 -1.5953 1.2328 31 1 1.6767 -0.2073 -2.1393 32 1 1.6767 -1.7488 -1.2494 33 1 3.7949 -0.4639 -3.3153 34 1 3.5859 -2.1510 -2.7871 35 1 5.9653 -1.5834 -3.4207 36 1 5.7996 -2.1463 -1.7384 37 1 7.2276 -0.8407 -4.1039 38 1 8.2652 1.6883 -4.8137 39 1 9.5250 0.7930 -3.9306 40 1 8.6848 -2.0102 -4.8523 41 1 9.6852 -2.0540 -6.3242 42 1 10.3540 -1.3930 -4.8132 43 1 7.3262 0.7605 -6.9343 44 1 7.9166 -0.7969 -7.5628 45 1 6.9168 -0.7526 -6.0911 46 1 10.2977 -1.4118 -9.0645 47 1 5.8006 -0.1008 0.1209 48 1 5.9715 1.5213 -0.6004 49 1 3.7947 1.3092 -1.7106 50 1 3.5850 0.9513 0.0206 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459227422.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:04 Heat of formation + Delta-G solvation = -65.903095 kcal Electronic energy + Delta-G solvation = -27524.953354 eV Core-core repulsion = 23780.615745 eV Total energy + Delta-G solvation = -3744.337610 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.26595 -38.92915 -37.20285 -36.28336 -34.34335 -33.28397 -31.53306 -31.34448 -30.51033 -28.11793 -25.71712 -25.62066 -25.09196 -24.71090 -23.61112 -22.01552 -20.93097 -19.30110 -18.86368 -17.99439 -16.84825 -16.31570 -15.92364 -15.67867 -15.44651 -15.35793 -15.04223 -14.75356 -14.61443 -14.07862 -13.79778 -13.64895 -13.46112 -12.88367 -12.87082 -12.73154 -12.50696 -12.27097 -12.12648 -11.99429 -11.66531 -11.45500 -11.35868 -11.20328 -11.15962 -10.88140 -10.83467 -10.71413 -10.37029 -10.30094 -10.18449 -9.68793 -9.61671 -9.28032 -8.79915 -8.78611 -8.49373 -8.37216 -8.06622 -6.00865 -4.10649 2.94381 3.31234 3.35233 3.39343 3.49694 3.66665 4.11667 4.29692 4.30252 4.43922 4.63561 4.69439 4.81013 4.91320 4.98773 5.04848 5.13367 5.25215 5.25860 5.27015 5.32153 5.47130 5.52378 5.61624 5.71319 5.75164 5.80173 6.00400 6.21514 6.38949 6.51395 6.60411 6.69316 6.79401 6.82265 6.83356 6.94508 7.04584 7.12635 7.31019 7.36825 7.41524 7.56941 7.70910 8.02189 8.13551 8.39194 8.45783 8.88970 9.06254 9.54938 11.00604 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.031732 B = 0.002574 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.181792 B =10874.688281 C =11214.117811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.098 3.902 3 H 0.101 0.899 4 O -0.551 6.551 5 C 0.022 3.978 6 N -0.527 5.527 7 C 0.041 3.959 8 C 0.118 3.882 9 N -0.638 5.638 10 C 0.702 3.298 11 O -0.598 6.598 12 N -0.734 5.734 13 C 0.149 3.851 14 C 0.056 3.944 15 C -0.130 4.130 16 C -0.129 4.129 17 C -0.505 4.505 18 H 0.057 0.943 19 C 0.066 3.934 20 N -0.887 5.887 21 Si 0.894 3.106 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 C 0.139 3.861 26 C 0.035 3.965 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.374 0.626 31 H 0.042 0.958 32 H 0.079 0.921 33 H 0.040 0.960 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.392 0.608 38 H 0.050 0.950 39 H 0.053 0.947 40 H 0.004 0.996 41 H 0.085 0.915 42 H 0.027 0.973 43 H 0.026 0.974 44 H 0.085 0.915 45 H 0.003 0.997 46 H 0.260 0.740 47 H 0.070 0.930 48 H 0.094 0.906 49 H 0.035 0.965 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.996 -3.496 13.401 23.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.038 3.962 3 H 0.118 0.882 4 O -0.355 6.355 5 C -0.106 4.106 6 N -0.252 5.252 7 C -0.088 4.088 8 C -0.006 4.006 9 N -0.377 5.377 10 C 0.403 3.597 11 O -0.477 6.477 12 N -0.390 5.390 13 C 0.026 3.974 14 C 0.056 3.944 15 C -0.187 4.187 16 C -0.186 4.186 17 C -0.543 4.543 18 H 0.075 0.925 19 C -0.135 4.135 20 N -0.526 5.526 21 Si 0.722 3.278 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.203 1.203 25 C 0.015 3.985 26 C -0.093 4.093 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.221 0.779 31 H 0.060 0.940 32 H 0.097 0.903 33 H 0.058 0.942 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.093 0.907 37 H 0.230 0.770 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.023 0.977 41 H 0.104 0.896 42 H 0.046 0.954 43 H 0.045 0.955 44 H 0.104 0.896 45 H 0.022 0.978 46 H 0.070 0.930 47 H 0.088 0.912 48 H 0.112 0.888 49 H 0.054 0.946 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -18.119 -2.608 13.991 23.041 hybrid contribution -0.151 -0.004 -1.640 1.647 sum -18.270 -2.611 12.351 22.207 Atomic orbital electron populations 1.22486 0.96222 1.02699 1.02916 1.22029 0.92541 0.96985 0.84601 0.88163 1.86601 1.77220 1.28913 1.42815 1.22891 0.88406 1.01428 0.97873 1.61933 1.06374 1.26281 1.30572 1.22506 0.95582 1.00771 0.89944 1.21639 0.92130 0.86649 1.00157 1.47331 1.36493 1.24821 1.29063 1.15985 0.79868 0.82949 0.80892 1.90865 1.60310 1.27804 1.68733 1.45665 1.43792 1.27510 1.22053 1.21586 0.88001 0.95179 0.92602 1.18357 0.94117 0.92604 0.89353 1.21820 0.97214 0.98736 1.00961 1.21814 0.95406 0.99390 1.02036 1.20948 1.20497 1.07445 1.05444 0.92455 1.24877 0.96497 0.94916 0.97231 1.69795 1.42774 1.18654 1.21344 0.86628 0.82191 0.79721 0.79277 1.20263 1.21356 1.20301 1.21540 0.90812 0.99997 0.86152 1.22759 0.95979 0.89291 1.01305 0.92152 0.91504 0.91633 0.77875 0.94007 0.90261 0.94199 0.89681 0.89935 0.90730 0.77048 0.93133 0.92868 0.97678 0.89614 0.95383 0.95490 0.89616 0.97770 0.92981 0.91210 0.88755 0.94650 0.88744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.94 9.53 37.16 0.35 -0.59 16 2 C 0.10 0.66 2.88 -26.73 -0.08 0.59 16 3 H 0.10 0.76 6.18 -51.93 -0.32 0.44 16 4 O -0.55 -4.40 13.02 -35.23 -0.46 -4.85 16 5 C 0.02 0.16 4.93 -3.83 -0.02 0.14 16 6 N -0.53 -5.04 4.64 -234.03 -1.09 -6.13 16 7 C 0.04 0.40 5.58 -3.70 -0.02 0.38 16 8 C 0.12 1.38 6.59 -3.60 -0.02 1.35 16 9 N -0.64 -9.42 3.00 -177.90 -0.53 -9.95 16 10 C 0.70 13.31 8.31 -86.91 -0.72 12.59 16 11 O -0.60 -13.53 15.83 5.29 0.08 -13.45 16 12 N -0.73 -13.84 4.87 -65.22 -0.32 -14.16 16 13 C 0.15 3.29 4.51 -4.04 -0.02 3.27 16 14 C 0.06 1.32 0.50 -155.65 -0.08 1.25 16 15 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 16 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 17 C -0.50 -13.33 8.01 -34.44 -0.28 -13.61 16 18 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 19 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 20 N -0.89 -23.66 9.35 55.43 0.52 -23.15 16 21 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 C 0.14 1.80 6.61 -3.36 -0.02 1.78 16 26 C 0.04 0.37 5.06 -3.46 -0.02 0.36 16 27 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.37 1.82 9.05 45.56 0.41 2.23 16 31 H 0.04 0.31 8.08 -51.93 -0.42 -0.11 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.68 8.11 -51.93 -0.42 0.26 16 35 H 0.08 0.96 5.63 -51.93 -0.29 0.67 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.39 6.69 3.66 -40.82 -0.15 6.54 16 38 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 41 H 0.09 2.14 6.07 -51.93 -0.32 1.83 16 42 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 45 H 0.00 0.07 6.86 -51.93 -0.36 -0.29 16 46 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 47 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.09 1.36 7.09 -51.93 -0.37 0.99 16 49 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.09 0.92 5.58 -51.93 -0.29 0.63 16 LS Contribution 378.39 15.07 5.70 5.70 Total: -1.00 -30.58 378.39 -9.33 -39.91 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -7.81 Total: 6.36 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: -0.41 Total: 3.90 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: -1.42 Total: -53.39 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: -0.37 Total: -18.30 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.58 -9.33 -39.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459227422.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.988 kcal (2) G-P(sol) polarization free energy of solvation -30.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds