Wall clock time and date at job start Fri Apr 10 2020 18:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47387 * 2 1 4 4 O 1.42898 * 109.47095 * 120.00514 * 2 1 3 5 5 C 1.53001 * 109.47303 * 240.00308 * 2 1 3 6 6 N 1.46895 * 109.47549 * 179.97438 * 5 2 1 7 7 C 1.46899 * 111.00344 * 189.99782 * 6 5 2 8 8 C 1.53242 * 109.34172 * 187.25408 * 7 6 5 9 9 N 1.47081 * 108.51807 * 306.17193 * 8 7 6 10 10 C 1.34779 * 120.88150 * 231.18419 * 9 8 7 11 11 O 1.21585 * 120.00123 * 184.99295 * 10 9 8 12 12 N 1.34780 * 119.99551 * 4.71850 * 10 9 8 13 13 C 1.46502 * 119.99514 * 175.19705 * 12 10 9 14 14 C 1.53006 * 109.46790 * 180.02562 * 13 12 10 15 15 C 1.53003 * 109.46718 * 299.99562 * 14 13 12 16 16 C 1.52998 * 109.47413 * 59.99812 * 14 13 12 17 17 C 1.50705 * 109.47000 * 179.97438 * 14 13 12 18 18 H 1.07997 * 119.99997 * 359.97438 * 17 14 13 19 19 C 1.37870 * 119.99866 * 179.97438 * 17 14 13 20 20 N 1.31519 * 120.00169 * 359.97438 * 19 17 14 21 21 Si 1.86801 * 120.00188 * 179.97438 * 19 17 14 22 22 H 1.48504 * 109.47078 * 59.99432 * 21 19 17 23 23 H 1.48499 * 109.47498 * 179.97438 * 21 19 17 24 24 H 1.48509 * 109.46729 * 300.00145 * 21 19 17 25 25 C 1.47082 * 118.23896 * 51.45866 * 9 8 7 26 26 C 1.46904 * 110.99880 * 314.30270 * 6 5 2 27 27 H 1.09000 * 109.47155 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47023 * 299.99646 * 1 2 3 29 29 H 1.09000 * 109.47041 * 59.99950 * 1 2 3 30 30 H 0.96696 * 114.00374 * 59.99950 * 4 2 1 31 31 H 1.09000 * 109.47283 * 59.99890 * 5 2 1 32 32 H 1.09000 * 109.47156 * 300.00172 * 5 2 1 33 33 H 1.09005 * 109.48941 * 67.29367 * 7 6 5 34 34 H 1.08992 * 109.51517 * 307.22938 * 7 6 5 35 35 H 1.08994 * 109.62744 * 186.46626 * 8 7 6 36 36 H 1.08999 * 109.79031 * 65.97170 * 8 7 6 37 37 H 0.96992 * 120.00449 * 355.19226 * 12 10 9 38 38 H 1.08998 * 109.46951 * 299.99161 * 13 12 10 39 39 H 1.08998 * 109.47956 * 59.99892 * 13 12 10 40 40 H 1.09000 * 109.46929 * 60.00480 * 15 14 13 41 41 H 1.09006 * 109.46892 * 180.02562 * 15 14 13 42 42 H 1.08998 * 109.47159 * 299.99597 * 15 14 13 43 43 H 1.08992 * 109.47163 * 59.99546 * 16 14 13 44 44 H 1.08998 * 109.47343 * 180.02562 * 16 14 13 45 45 H 1.09001 * 109.46820 * 299.99849 * 16 14 13 46 46 H 0.97000 * 119.99828 * 179.97438 * 20 19 17 47 47 H 1.09005 * 109.62646 * 68.24926 * 25 9 8 48 48 H 1.09000 * 109.62894 * 188.83127 * 25 9 8 49 49 H 1.08993 * 109.48933 * 292.70090 * 26 6 5 50 50 H 1.08998 * 109.49117 * 52.76010 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.0400 -0.7212 -1.2493 6 7 3.5090 -0.7207 -1.2496 7 6 4.0353 -1.1897 -2.5384 8 6 5.5564 -1.3470 -2.4384 9 7 6.1265 -0.0791 -1.9581 10 6 7.1448 0.5135 -2.6126 11 8 7.6640 1.5121 -2.1527 12 7 7.5912 -0.0041 -3.7743 13 6 8.6256 0.6970 -4.5389 14 6 8.9489 -0.0968 -5.8064 15 6 9.4545 -1.4886 -5.4213 16 6 7.6864 -0.2310 -6.6601 17 6 10.0126 0.6246 -6.5933 18 1 10.4172 1.5563 -6.2264 19 6 10.4691 0.0952 -7.7817 20 7 9.9767 -1.0396 -8.2282 21 14 11.7870 0.9898 -8.7575 22 1 13.0125 1.1217 -7.9292 23 1 12.1018 0.2187 -9.9870 24 1 11.2949 2.3400 -9.1318 25 6 5.5601 0.5218 -0.7409 26 6 4.0350 0.6085 -0.9111 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.7210 -1.5953 1.2328 31 1 1.6767 -0.2073 -2.1393 32 1 1.6767 -1.7488 -1.2494 33 1 3.7949 -0.4639 -3.3153 34 1 3.5859 -2.1510 -2.7871 35 1 5.9653 -1.5834 -3.4207 36 1 5.7996 -2.1463 -1.7384 37 1 7.2276 -0.8407 -4.1039 38 1 8.2652 1.6883 -4.8137 39 1 9.5250 0.7930 -3.9306 40 1 8.6848 -2.0102 -4.8523 41 1 9.6852 -2.0540 -6.3242 42 1 10.3540 -1.3930 -4.8132 43 1 7.3262 0.7605 -6.9343 44 1 7.9166 -0.7969 -7.5628 45 1 6.9168 -0.7526 -6.0911 46 1 10.2977 -1.4118 -9.0645 47 1 5.8006 -0.1008 0.1209 48 1 5.9715 1.5213 -0.6004 49 1 3.7947 1.3092 -1.7106 50 1 3.5850 0.9513 0.0206 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459227422.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:03 Heat of formation + Delta-G solvation = -88.158831 kcal Electronic energy + Delta-G solvation = -27525.918435 eV Core-core repulsion = 23780.615745 eV Total energy + Delta-G solvation = -3745.302691 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.51752 -39.88331 -38.36078 -37.73471 -35.46523 -34.93731 -32.84891 -32.20137 -31.75012 -29.02627 -27.57324 -27.44553 -26.65514 -25.60353 -24.68172 -22.87963 -21.82214 -20.64222 -20.59414 -19.29853 -17.85565 -17.51431 -17.11659 -16.92670 -16.66530 -16.56920 -16.16273 -15.91677 -15.51552 -15.34607 -15.10217 -14.98906 -14.68797 -14.43600 -14.10177 -13.99251 -13.45459 -13.22146 -13.16681 -13.09798 -12.93302 -12.68173 -12.64713 -12.61373 -12.47878 -12.31426 -12.25250 -12.15878 -12.11106 -11.49458 -11.49191 -11.33023 -11.10068 -10.82197 -10.71920 -10.39883 -10.15476 -9.59748 -9.21979 -8.02052 -6.17546 1.44638 1.45515 1.52042 1.66134 2.13119 2.46042 2.80714 3.00528 3.21497 3.61677 3.74496 3.84792 3.96822 4.14665 4.18270 4.23708 4.26823 4.31911 4.42948 4.51204 4.52437 4.62410 4.69243 4.72460 4.75994 4.83470 4.84222 4.90215 4.98157 5.03435 5.04558 5.09649 5.18903 5.19773 5.28842 5.37171 5.49509 5.61095 5.66626 5.67359 5.86905 5.99340 6.08737 6.14488 6.21117 6.43699 6.85886 6.98104 7.00098 7.49872 7.56854 8.96923 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.031732 B = 0.002574 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.181792 B =10874.688281 C =11214.117811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.100 3.900 3 H 0.088 0.912 4 O -0.569 6.569 5 C 0.024 3.976 6 N -0.529 5.529 7 C 0.045 3.955 8 C 0.113 3.887 9 N -0.630 5.630 10 C 0.697 3.303 11 O -0.641 6.641 12 N -0.726 5.726 13 C 0.167 3.833 14 C 0.053 3.947 15 C -0.119 4.119 16 C -0.118 4.118 17 C -0.529 4.529 18 H 0.044 0.956 19 C 0.029 3.971 20 N -0.899 5.899 21 Si 0.945 3.055 22 H -0.278 1.278 23 H -0.282 1.282 24 H -0.277 1.277 25 C 0.136 3.864 26 C 0.047 3.953 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.387 0.613 31 H 0.043 0.957 32 H 0.097 0.903 33 H 0.028 0.972 34 H 0.113 0.887 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.403 0.597 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.065 0.935 42 H 0.017 0.983 43 H 0.017 0.983 44 H 0.064 0.936 45 H 0.034 0.966 46 H 0.261 0.739 47 H 0.078 0.922 48 H 0.074 0.926 49 H 0.024 0.976 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.856 -4.941 13.805 25.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.041 3.959 3 H 0.106 0.894 4 O -0.376 6.376 5 C -0.103 4.103 6 N -0.254 5.254 7 C -0.083 4.083 8 C -0.010 4.010 9 N -0.368 5.368 10 C 0.399 3.601 11 O -0.523 6.523 12 N -0.384 5.384 13 C 0.042 3.958 14 C 0.052 3.948 15 C -0.177 4.177 16 C -0.176 4.176 17 C -0.568 4.568 18 H 0.062 0.938 19 C -0.171 4.171 20 N -0.537 5.537 21 Si 0.772 3.228 22 H -0.203 1.203 23 H -0.207 1.207 24 H -0.203 1.203 25 C 0.013 3.987 26 C -0.082 4.082 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.236 0.764 31 H 0.061 0.939 32 H 0.116 0.884 33 H 0.047 0.953 34 H 0.131 0.869 35 H 0.102 0.898 36 H 0.107 0.893 37 H 0.242 0.758 38 H 0.052 0.948 39 H 0.052 0.948 40 H 0.053 0.947 41 H 0.084 0.916 42 H 0.036 0.964 43 H 0.036 0.964 44 H 0.083 0.917 45 H 0.053 0.947 46 H 0.070 0.930 47 H 0.097 0.903 48 H 0.092 0.908 49 H 0.042 0.958 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -20.035 -4.106 14.408 25.017 hybrid contribution 0.377 0.413 -1.698 1.787 sum -19.658 -3.693 12.710 23.699 Atomic orbital electron populations 1.22415 0.94783 1.03551 1.02943 1.21987 0.93590 0.96231 0.84130 0.89370 1.86570 1.77668 1.30130 1.43252 1.22960 0.86654 1.02632 0.98068 1.61954 1.07956 1.25157 1.30355 1.22497 0.94219 1.01884 0.89741 1.21906 0.93397 0.85229 1.00471 1.47397 1.35036 1.25530 1.28871 1.16136 0.80499 0.82637 0.80849 1.90833 1.61951 1.29787 1.69738 1.45367 1.43265 1.27722 1.22008 1.21144 0.88028 0.94537 0.92053 1.18351 0.93919 0.92828 0.89671 1.21662 0.97718 0.98197 1.00136 1.21646 0.95727 0.98860 1.01324 1.21224 1.21729 1.07480 1.06360 0.93798 1.25439 0.98081 0.95619 0.97936 1.69892 1.43245 1.19142 1.21438 0.85818 0.80039 0.78755 0.78189 1.20339 1.20697 1.20291 1.21651 0.92365 0.99017 0.85682 1.22598 0.94102 0.89966 1.01503 0.90890 0.91865 0.91223 0.76369 0.93879 0.88444 0.95325 0.86938 0.89796 0.89287 0.75767 0.94795 0.94785 0.94694 0.91649 0.96407 0.96391 0.91681 0.94724 0.92961 0.90348 0.90760 0.95788 0.87711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.39 9.53 71.98 0.69 -0.71 16 2 C 0.10 1.14 2.88 30.59 0.09 1.23 16 3 H 0.09 1.21 6.18 -2.39 -0.01 1.19 16 4 O -0.57 -7.83 13.02 -148.98 -1.94 -9.77 16 5 C 0.02 0.28 4.93 86.30 0.43 0.71 16 6 N -0.53 -8.77 4.64 -894.33 -4.15 -12.92 16 7 C 0.05 0.76 5.58 86.38 0.48 1.24 16 8 C 0.11 2.34 6.59 86.35 0.57 2.91 16 9 N -0.63 -17.97 3.00 -835.03 -2.51 -20.47 16 10 C 0.70 26.37 8.31 179.05 1.49 27.86 16 11 O -0.64 -29.65 15.83 -3.98 -0.06 -29.71 16 12 N -0.73 -26.95 4.87 -478.52 -2.33 -29.29 16 13 C 0.17 7.45 4.51 86.38 0.39 7.84 16 14 C 0.05 2.49 0.50 -52.92 -0.03 2.46 16 15 C -0.12 -5.37 8.08 71.98 0.58 -4.79 16 16 C -0.12 -5.25 8.08 71.98 0.58 -4.67 16 17 C -0.53 -28.33 8.01 25.60 0.21 -28.13 16 18 H 0.04 2.40 7.74 -2.91 -0.02 2.38 16 19 C 0.03 1.54 5.15 84.65 0.44 1.97 16 20 N -0.90 -47.81 9.35 21.45 0.20 -47.61 16 21 Si 0.95 42.81 29.54 68.60 2.03 44.84 16 22 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 23 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 24 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 25 C 0.14 3.45 6.61 86.50 0.57 4.02 16 26 C 0.05 0.94 5.06 86.54 0.44 1.38 16 27 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 28 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.39 2.76 9.05 -74.06 -0.67 2.09 16 31 H 0.04 0.52 8.08 -2.39 -0.02 0.50 16 32 H 0.10 0.82 8.14 -2.39 -0.02 0.81 16 33 H 0.03 0.56 8.14 -2.38 -0.02 0.54 16 34 H 0.11 1.33 8.11 -2.39 -0.02 1.31 16 35 H 0.08 1.72 5.63 -2.39 -0.01 1.71 16 36 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.40 12.99 3.66 -92.71 -0.34 12.65 16 38 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.03 1.31 6.86 -2.39 -0.02 1.30 16 41 H 0.06 3.23 6.07 -2.38 -0.01 3.22 16 42 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.06 3.20 6.07 -2.39 -0.01 3.18 16 45 H 0.03 1.28 6.86 -2.39 -0.02 1.27 16 46 H 0.26 13.38 8.31 -92.71 -0.77 12.60 16 47 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 48 H 0.07 2.19 7.09 -2.39 -0.02 2.17 16 49 H 0.02 0.54 8.14 -2.39 -0.02 0.52 16 50 H 0.10 1.91 5.58 -2.39 -0.01 1.89 16 Total: -1.00 -66.03 378.39 -1.93 -67.96 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: -0.07 Total: 23.65 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: 6.91 Total: 13.34 kcal Atomic # 7 Polarization: -101.51 SS G_CDS: -8.79 Total: -110.30 kcal Atomic # 8 Polarization: -37.48 SS G_CDS: -2.00 Total: -39.48 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -66.03 -1.93 -67.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459227422.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.202 kcal (2) G-P(sol) polarization free energy of solvation -66.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds