Wall clock time and date at job start Fri Apr 10 2020 18:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45200 * 109.47163 * 2 1 4 4 C 1.34635 * 117.00106 * 180.02562 * 3 2 1 5 5 O 1.21515 * 119.99936 * 359.97438 * 4 3 2 6 6 N 1.34770 * 120.00257 * 180.02562 * 4 3 2 7 7 C 1.46504 * 120.00238 * 179.97438 * 6 4 3 8 8 C 1.50700 * 109.47328 * 180.02562 * 7 6 4 9 9 O 1.21283 * 119.99638 * 359.97438 * 8 7 6 10 10 N 1.34770 * 120.00068 * 180.02562 * 8 7 6 11 11 C 1.46503 * 120.00084 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.47208 * 179.97438 * 11 10 8 13 13 C 1.53352 * 109.41800 * 295.12674 * 12 11 10 14 14 C 1.53190 * 109.15070 * 178.67720 * 13 12 11 15 15 N 1.46925 * 108.89356 * 54.57285 * 14 13 12 16 16 C 1.36935 * 120.62758 * 126.30089 * 15 14 13 17 17 H 1.08001 * 120.00088 * 332.62829 * 16 15 14 18 18 C 1.38817 * 119.99782 * 152.62208 * 16 15 14 19 19 N 1.31618 * 119.99923 * 159.36242 * 18 16 15 20 20 Si 1.86801 * 120.00195 * 339.36341 * 18 16 15 21 21 H 1.48501 * 109.47054 * 92.89675 * 20 18 16 22 22 H 1.48497 * 109.47324 * 212.90179 * 20 18 16 23 23 H 1.48501 * 109.46722 * 332.89954 * 20 18 16 24 24 C 1.46926 * 118.73822 * 306.31916 * 15 14 13 25 25 C 1.53037 * 109.46053 * 174.99519 * 12 11 10 26 26 H 1.09008 * 109.47285 * 59.99260 * 1 2 3 27 27 H 1.08996 * 109.47273 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46913 * 300.00105 * 1 2 3 29 29 H 1.08993 * 109.46685 * 240.00015 * 2 1 3 30 30 H 1.08995 * 109.47212 * 120.00113 * 2 1 3 31 31 H 0.97006 * 119.99889 * 0.02562 * 6 4 3 32 32 H 1.08996 * 109.46954 * 59.99694 * 7 6 4 33 33 H 1.09008 * 109.46640 * 299.99853 * 7 6 4 34 34 H 0.97004 * 120.00152 * 359.97438 * 10 8 7 35 35 H 1.08996 * 109.47010 * 59.99318 * 11 10 8 36 36 H 1.08996 * 109.46600 * 299.99324 * 11 10 8 37 37 H 1.09008 * 109.45887 * 55.02318 * 12 11 10 38 38 H 1.09004 * 109.68561 * 58.70472 * 13 12 11 39 39 H 1.09004 * 109.47287 * 298.51133 * 13 12 11 40 40 H 1.09004 * 109.58215 * 294.71811 * 14 13 12 41 41 H 1.08997 * 109.58828 * 174.43980 * 14 13 12 42 42 H 0.96999 * 119.99917 * 180.02562 * 19 18 16 43 43 H 1.09002 * 109.58248 * 173.39705 * 24 15 14 44 44 H 1.08994 * 109.58922 * 293.68210 * 24 15 14 45 45 H 1.09003 * 109.49698 * 61.43697 * 25 12 11 46 46 H 1.08994 * 109.52761 * 301.35110 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3488 1.5454 -0.0005 5 8 4.0890 0.5817 -0.0005 6 7 3.8639 2.7907 0.0000 7 6 5.3164 2.9827 -0.0001 8 6 5.6282 4.4571 0.0012 9 8 4.7261 5.2677 0.0015 10 7 6.9096 4.8748 0.0009 11 6 7.2128 6.3081 0.0015 12 6 8.7296 6.5086 0.0016 13 6 9.3155 5.9659 1.3108 14 6 10.8374 6.1396 1.2903 15 7 11.1518 7.5501 1.0255 16 6 11.9748 8.2511 1.8659 17 1 12.0478 7.9724 2.9068 18 6 12.7154 9.3199 1.3799 19 7 13.1759 10.2325 2.2090 20 14 13.0584 9.4631 -0.4508 21 1 12.0104 10.3012 -1.0867 22 1 14.3879 10.0914 -0.6577 23 1 13.0496 8.1102 -1.0632 24 6 10.5660 8.1943 -0.1580 25 6 9.0467 8.0005 -0.1236 26 1 -0.3634 0.5140 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8899 31 1 3.2730 3.5600 0.0011 32 1 5.7438 2.5212 -0.8902 33 1 5.7439 2.5205 0.8898 34 1 7.6311 4.2264 0.0002 35 1 6.7855 6.7694 0.8918 36 1 6.7850 6.7703 -0.8881 37 1 9.1668 5.9724 -0.8408 38 1 9.0712 4.9085 1.4119 39 1 8.8976 6.5184 2.1524 40 1 11.2657 5.5161 0.5055 41 1 11.2514 5.8478 2.2555 42 1 13.6931 10.9796 1.8694 43 1 10.7988 9.2591 -0.1473 44 1 10.9740 7.7401 -1.0609 45 1 8.6312 8.5337 0.7314 46 1 8.6095 8.3900 -1.0429 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492152927.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:22 Heat of formation + Delta-G solvation = -102.831188 kcal Electronic energy + Delta-G solvation = -25692.007968 eV Core-core repulsion = 21810.235942 eV Total energy + Delta-G solvation = -3881.772027 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.91798 -40.00355 -38.23877 -37.16341 -35.41179 -34.84402 -33.02482 -32.09661 -31.20931 -30.41881 -28.84088 -26.61350 -24.00174 -23.56025 -22.82267 -21.70273 -21.33128 -20.86702 -19.67636 -19.28576 -17.28180 -17.16202 -17.03703 -16.75094 -16.25007 -16.01598 -15.31766 -14.91370 -14.78483 -14.31086 -14.17862 -14.11568 -13.71361 -13.49102 -13.30181 -13.18430 -13.14949 -12.90133 -12.43935 -12.27553 -12.06883 -12.03725 -11.83689 -11.46200 -11.02948 -10.92276 -10.87967 -10.70375 -10.56329 -10.33897 -10.16836 -9.92120 -9.72654 -9.71207 -9.46330 -9.27097 -8.64850 -7.00757 -5.97136 -3.33094 1.64306 2.22835 2.45006 2.90803 3.29436 3.46202 3.48518 3.80824 4.31086 4.50450 4.51404 4.55396 4.84229 4.85161 4.85618 4.86595 4.91666 5.02479 5.14780 5.15760 5.33724 5.39004 5.51265 5.60642 5.67503 5.72104 5.81046 5.83988 5.99902 6.03608 6.10920 6.14153 6.29689 6.33342 6.42899 6.58515 6.60902 6.65753 6.91559 6.98896 7.16580 7.82703 7.93622 7.94003 8.30609 8.91908 9.69820 10.07374 11.18860 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.045613 B = 0.001960 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.714501 B =14280.165641 C =14447.579802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.082 3.918 3 O -0.369 6.369 4 C 0.653 3.347 5 O -0.574 6.574 6 N -0.698 5.698 7 C 0.117 3.883 8 C 0.507 3.493 9 O -0.538 6.538 10 N -0.717 5.717 11 C 0.123 3.877 12 C -0.092 4.092 13 C -0.130 4.130 14 C 0.148 3.852 15 N -0.606 5.606 16 C -0.261 4.261 17 H 0.085 0.915 18 C 0.023 3.977 19 N -0.908 5.908 20 Si 0.884 3.116 21 H -0.289 1.289 22 H -0.303 1.303 23 H -0.271 1.271 24 C 0.126 3.874 25 C -0.126 4.126 26 H 0.067 0.933 27 H 0.083 0.917 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.419 0.581 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.405 0.595 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.052 0.948 39 H 0.065 0.935 40 H 0.021 0.979 41 H 0.063 0.937 42 H 0.262 0.738 43 H 0.073 0.927 44 H 0.025 0.975 45 H 0.068 0.932 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.217 -18.271 -6.358 28.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.008 3.992 3 O -0.283 6.283 4 C 0.405 3.595 5 O -0.463 6.463 6 N -0.361 5.361 7 C -0.009 4.009 8 C 0.292 3.708 9 O -0.416 6.416 10 N -0.368 5.368 11 C 0.000 4.000 12 C -0.111 4.111 13 C -0.169 4.169 14 C 0.022 3.978 15 N -0.329 5.329 16 C -0.389 4.389 17 H 0.102 0.898 18 C -0.176 4.176 19 N -0.551 5.551 20 Si 0.714 3.286 21 H -0.216 1.216 22 H -0.232 1.232 23 H -0.196 1.196 24 C 0.000 4.000 25 C -0.166 4.166 26 H 0.086 0.914 27 H 0.101 0.899 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.258 0.742 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.240 0.760 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.039 0.961 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.091 0.909 44 H 0.042 0.958 45 H 0.087 0.913 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -21.428 -18.047 -6.307 28.717 hybrid contribution 0.464 0.157 -1.026 1.137 sum -20.964 -17.889 -7.333 28.518 Atomic orbital electron populations 1.21843 0.92430 1.03155 1.03690 1.22992 0.94905 0.78412 1.02925 1.86250 1.21702 1.33502 1.86878 1.17905 0.81339 0.83906 0.76336 1.91016 1.59839 1.39691 1.55789 1.44195 1.07294 1.06410 1.78166 1.21029 0.80378 0.93992 1.05511 1.20337 0.83460 0.90306 0.76688 1.90727 1.45511 1.55490 1.49849 1.45950 1.06944 1.09608 1.74321 1.21618 0.96515 0.79369 1.02449 1.21378 0.92252 0.98332 0.99133 1.22148 0.98946 0.99018 0.96806 1.20908 0.91822 0.85841 0.99256 1.44344 1.54087 1.06612 1.27901 1.18922 1.17778 1.10748 0.91455 0.89753 1.25284 0.97958 0.97086 0.97277 1.69838 1.39139 1.11645 1.34473 0.86942 0.76450 0.77795 0.87388 1.21631 1.23171 1.19650 1.21327 0.90643 0.98212 0.89785 1.21988 0.99198 0.93972 1.01400 0.91393 0.89880 0.91359 0.91041 0.91007 0.74236 0.87840 0.87759 0.75989 0.91058 0.91398 0.91027 0.92891 0.91621 0.96091 0.91885 0.92765 0.90855 0.95761 0.91305 0.92524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 10.29 37.16 0.38 -0.30 16 2 C 0.08 0.58 6.19 37.16 0.23 0.81 16 3 O -0.37 -3.55 10.27 -40.31 -0.41 -3.97 16 4 C 0.65 7.13 8.75 54.05 0.47 7.60 16 5 O -0.57 -7.59 16.13 -19.28 -0.31 -7.90 16 6 N -0.70 -6.66 5.53 -66.47 -0.37 -7.03 16 7 C 0.12 0.96 6.15 -5.19 -0.03 0.92 16 8 C 0.51 5.14 7.90 -10.99 -0.09 5.05 16 9 O -0.54 -7.33 15.67 5.56 0.09 -7.24 16 10 N -0.72 -6.63 5.27 -60.30 -0.32 -6.95 16 11 C 0.12 1.42 5.07 -4.04 -0.02 1.40 16 12 C -0.09 -1.21 2.19 -90.42 -0.20 -1.40 16 13 C -0.13 -1.83 5.27 -26.45 -0.14 -1.97 16 14 C 0.15 2.68 6.50 -3.71 -0.02 2.65 16 15 N -0.61 -13.76 2.77 -172.32 -0.48 -14.23 16 16 C -0.26 -7.13 10.03 -15.06 -0.15 -7.29 16 17 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 18 C 0.02 0.65 5.23 -17.43 -0.09 0.56 16 19 N -0.91 -27.56 13.97 55.49 0.78 -26.79 16 20 Si 0.88 22.02 24.34 -169.99 -4.14 17.88 16 21 H -0.29 -6.92 6.62 56.52 0.37 -6.55 16 22 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 23 H -0.27 -6.62 6.64 56.52 0.38 -6.24 16 24 C 0.13 2.61 4.21 -3.71 -0.02 2.59 16 25 C -0.13 -2.03 5.36 -26.61 -0.14 -2.17 16 26 H 0.07 0.30 8.14 -51.92 -0.42 -0.12 16 27 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.42 3.98 7.55 -40.82 -0.31 3.67 16 32 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.10 0.74 8.14 -51.92 -0.42 0.32 16 34 H 0.40 2.82 7.65 -40.82 -0.31 2.51 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.90 8.14 -51.92 -0.42 0.47 16 38 H 0.05 0.58 7.16 -51.93 -0.37 0.21 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 42 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 43 H 0.07 1.70 4.50 -51.93 -0.23 1.46 16 44 H 0.02 0.50 7.07 -51.93 -0.37 0.13 16 45 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 46 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 369.67 15.07 5.57 5.57 Total: -1.00 -34.05 369.67 -6.94 -40.99 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -7.53 Total: 1.21 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: 0.18 Total: 8.46 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: -0.39 Total: -55.01 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.64 Total: -19.11 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.14 Total: 17.88 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.05 -6.94 -40.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492152927.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.837 kcal (2) G-P(sol) polarization free energy of solvation -34.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds