Wall clock time and date at job start Fri Apr 10 2020 18:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45200 * 109.47163 * 2 1 4 4 C 1.34635 * 117.00106 * 180.02562 * 3 2 1 5 5 O 1.21515 * 119.99936 * 359.97438 * 4 3 2 6 6 N 1.34770 * 120.00257 * 180.02562 * 4 3 2 7 7 C 1.46504 * 120.00238 * 179.97438 * 6 4 3 8 8 C 1.50700 * 109.47328 * 180.02562 * 7 6 4 9 9 O 1.21283 * 119.99638 * 359.97438 * 8 7 6 10 10 N 1.34770 * 120.00068 * 180.02562 * 8 7 6 11 11 C 1.46503 * 120.00084 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.47208 * 179.97438 * 11 10 8 13 13 C 1.53352 * 109.41800 * 295.12674 * 12 11 10 14 14 C 1.53190 * 109.15070 * 178.67720 * 13 12 11 15 15 N 1.46925 * 108.89356 * 54.57285 * 14 13 12 16 16 C 1.36935 * 120.62758 * 126.30089 * 15 14 13 17 17 H 1.08001 * 120.00088 * 332.62829 * 16 15 14 18 18 C 1.38817 * 119.99782 * 152.62208 * 16 15 14 19 19 N 1.31618 * 119.99923 * 159.36242 * 18 16 15 20 20 Si 1.86801 * 120.00195 * 339.36341 * 18 16 15 21 21 H 1.48501 * 109.47054 * 92.89675 * 20 18 16 22 22 H 1.48497 * 109.47324 * 212.90179 * 20 18 16 23 23 H 1.48501 * 109.46722 * 332.89954 * 20 18 16 24 24 C 1.46926 * 118.73822 * 306.31916 * 15 14 13 25 25 C 1.53037 * 109.46053 * 174.99519 * 12 11 10 26 26 H 1.09008 * 109.47285 * 59.99260 * 1 2 3 27 27 H 1.08996 * 109.47273 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46913 * 300.00105 * 1 2 3 29 29 H 1.08993 * 109.46685 * 240.00015 * 2 1 3 30 30 H 1.08995 * 109.47212 * 120.00113 * 2 1 3 31 31 H 0.97006 * 119.99889 * 0.02562 * 6 4 3 32 32 H 1.08996 * 109.46954 * 59.99694 * 7 6 4 33 33 H 1.09008 * 109.46640 * 299.99853 * 7 6 4 34 34 H 0.97004 * 120.00152 * 359.97438 * 10 8 7 35 35 H 1.08996 * 109.47010 * 59.99318 * 11 10 8 36 36 H 1.08996 * 109.46600 * 299.99324 * 11 10 8 37 37 H 1.09008 * 109.45887 * 55.02318 * 12 11 10 38 38 H 1.09004 * 109.68561 * 58.70472 * 13 12 11 39 39 H 1.09004 * 109.47287 * 298.51133 * 13 12 11 40 40 H 1.09004 * 109.58215 * 294.71811 * 14 13 12 41 41 H 1.08997 * 109.58828 * 174.43980 * 14 13 12 42 42 H 0.96999 * 119.99917 * 180.02562 * 19 18 16 43 43 H 1.09002 * 109.58248 * 173.39705 * 24 15 14 44 44 H 1.08994 * 109.58922 * 293.68210 * 24 15 14 45 45 H 1.09003 * 109.49698 * 61.43697 * 25 12 11 46 46 H 1.08994 * 109.52761 * 301.35110 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3488 1.5454 -0.0005 5 8 4.0890 0.5817 -0.0005 6 7 3.8639 2.7907 0.0000 7 6 5.3164 2.9827 -0.0001 8 6 5.6282 4.4571 0.0012 9 8 4.7261 5.2677 0.0015 10 7 6.9096 4.8748 0.0009 11 6 7.2128 6.3081 0.0015 12 6 8.7296 6.5086 0.0016 13 6 9.3155 5.9659 1.3108 14 6 10.8374 6.1396 1.2903 15 7 11.1518 7.5501 1.0255 16 6 11.9748 8.2511 1.8659 17 1 12.0478 7.9724 2.9068 18 6 12.7154 9.3199 1.3799 19 7 13.1759 10.2325 2.2090 20 14 13.0584 9.4631 -0.4508 21 1 12.0104 10.3012 -1.0867 22 1 14.3879 10.0914 -0.6577 23 1 13.0496 8.1102 -1.0632 24 6 10.5660 8.1943 -0.1580 25 6 9.0467 8.0005 -0.1236 26 1 -0.3634 0.5140 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8899 31 1 3.2730 3.5600 0.0011 32 1 5.7438 2.5212 -0.8902 33 1 5.7439 2.5205 0.8898 34 1 7.6311 4.2264 0.0002 35 1 6.7855 6.7694 0.8918 36 1 6.7850 6.7703 -0.8881 37 1 9.1668 5.9724 -0.8408 38 1 9.0712 4.9085 1.4119 39 1 8.8976 6.5184 2.1524 40 1 11.2657 5.5161 0.5055 41 1 11.2514 5.8478 2.2555 42 1 13.6931 10.9796 1.8694 43 1 10.7988 9.2591 -0.1473 44 1 10.9740 7.7401 -1.0609 45 1 8.6312 8.5337 0.7314 46 1 8.6095 8.3900 -1.0429 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492152927.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:21 Heat of formation + Delta-G solvation = -129.527095 kcal Electronic energy + Delta-G solvation = -25693.165590 eV Core-core repulsion = 21810.235942 eV Total energy + Delta-G solvation = -3882.929648 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.69583 -40.85823 -39.55818 -37.92000 -36.58793 -35.69028 -34.56176 -32.96152 -32.54075 -31.85430 -29.78715 -27.88149 -25.48829 -24.39194 -24.02458 -22.82616 -22.38240 -21.69177 -20.87124 -20.21867 -18.75859 -18.04256 -17.87240 -17.79744 -17.18163 -17.00730 -16.77608 -15.93831 -15.73346 -15.57354 -15.27583 -15.11686 -14.99392 -14.79439 -14.43435 -14.26265 -14.03032 -13.86858 -13.54621 -13.54205 -13.36781 -12.93605 -12.85450 -12.53164 -12.51666 -12.23397 -12.10339 -11.89215 -11.72236 -11.57195 -11.53742 -11.34526 -11.17621 -11.07724 -10.65507 -10.46242 -10.11610 -8.89920 -8.15337 -5.46227 0.96125 1.31083 1.42304 1.45378 1.51473 1.64077 2.13587 2.43007 3.07826 3.15409 3.39744 3.59610 3.81334 3.89265 3.98790 4.04501 4.10481 4.27845 4.28758 4.37541 4.41342 4.46672 4.57123 4.66560 4.72617 4.75680 4.79342 4.91612 4.94161 4.99838 5.04118 5.11713 5.16879 5.19950 5.24399 5.31275 5.34370 5.43760 5.62465 5.89154 6.14174 6.22187 6.43387 6.95520 7.09220 7.16311 7.66203 8.05678 9.04772 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.045613 B = 0.001960 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.714501 B =14280.165641 C =14447.579802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.073 3.927 3 O -0.375 6.375 4 C 0.651 3.349 5 O -0.600 6.600 6 N -0.696 5.696 7 C 0.121 3.879 8 C 0.513 3.487 9 O -0.575 6.575 10 N -0.705 5.705 11 C 0.135 3.865 12 C -0.081 4.081 13 C -0.119 4.119 14 C 0.140 3.860 15 N -0.622 5.622 16 C -0.248 4.248 17 H 0.048 0.952 18 C -0.039 4.039 19 N -0.960 5.960 20 Si 0.950 3.050 21 H -0.275 1.275 22 H -0.314 1.314 23 H -0.258 1.258 24 C 0.119 3.881 25 C -0.121 4.121 26 H 0.067 0.933 27 H 0.104 0.896 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.419 0.581 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.420 0.580 35 H 0.057 0.943 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.045 0.955 40 H 0.041 0.959 41 H 0.050 0.950 42 H 0.260 0.740 43 H 0.044 0.956 44 H 0.037 0.963 45 H 0.051 0.949 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.841 -20.523 -8.486 31.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.000 4.000 3 O -0.289 6.289 4 C 0.404 3.596 5 O -0.492 6.492 6 N -0.358 5.358 7 C -0.005 4.005 8 C 0.299 3.701 9 O -0.455 6.455 10 N -0.358 5.358 11 C 0.011 3.989 12 C -0.099 4.099 13 C -0.158 4.158 14 C 0.015 3.985 15 N -0.347 5.347 16 C -0.378 4.378 17 H 0.066 0.934 18 C -0.234 4.234 19 N -0.606 5.606 20 Si 0.779 3.221 21 H -0.202 1.202 22 H -0.243 1.243 23 H -0.182 1.182 24 C -0.006 4.006 25 C -0.160 4.160 26 H 0.086 0.914 27 H 0.123 0.877 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.258 0.742 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.258 0.742 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.062 0.938 44 H 0.055 0.945 45 H 0.070 0.930 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -23.079 -20.354 -8.458 31.913 hybrid contribution 0.916 0.791 -0.274 1.241 sum -22.163 -19.562 -8.733 30.824 Atomic orbital electron populations 1.21864 0.90416 1.04562 1.03653 1.23272 0.96475 0.77353 1.02947 1.86272 1.21016 1.35022 1.86596 1.18022 0.81591 0.83889 0.76061 1.90993 1.60460 1.40486 1.57214 1.44270 1.07987 1.05984 1.77539 1.21137 0.79772 0.92502 1.07111 1.20586 0.83089 0.90790 0.75666 1.90723 1.46624 1.56591 1.51564 1.45768 1.07274 1.08976 1.73758 1.21314 0.94939 0.80615 1.01991 1.21248 0.93382 0.96193 0.99122 1.22031 0.95574 1.01396 0.96818 1.21147 0.94728 0.83400 0.99212 1.44500 1.53780 1.08500 1.27887 1.18875 1.17612 1.10455 0.90831 0.93415 1.25946 0.98608 0.97136 1.01671 1.69982 1.41231 1.12793 1.36638 0.85857 0.75738 0.78367 0.82116 1.20175 1.24330 1.18184 1.21400 0.93660 0.96406 0.89135 1.21878 0.95668 0.96382 1.02088 0.91352 0.87729 0.91416 0.90989 0.91076 0.74227 0.86004 0.86249 0.74246 0.92471 0.91141 0.88958 0.88833 0.93564 0.94104 0.93184 0.93089 0.93764 0.94483 0.92996 0.89896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.29 71.98 0.74 -0.33 16 2 C 0.07 0.95 6.19 71.98 0.45 1.39 16 3 O -0.38 -6.81 10.27 -55.45 -0.57 -7.38 16 4 C 0.65 13.32 8.75 129.79 1.14 14.46 16 5 O -0.60 -14.98 16.13 19.79 0.32 -14.66 16 6 N -0.70 -12.02 5.53 -594.61 -3.29 -15.30 16 7 C 0.12 1.61 6.15 85.63 0.53 2.14 16 8 C 0.51 8.91 7.90 87.66 0.69 9.60 16 9 O -0.58 -14.56 15.67 -3.04 -0.05 -14.61 16 10 N -0.71 -10.37 5.27 -463.07 -2.44 -12.81 16 11 C 0.14 2.67 5.07 86.38 0.44 3.10 16 12 C -0.08 -1.82 2.19 -10.66 -0.02 -1.84 16 13 C -0.12 -3.01 5.27 30.78 0.16 -2.85 16 14 C 0.14 4.79 6.50 86.36 0.56 5.36 16 15 N -0.62 -27.81 2.77 -699.10 -1.94 -29.75 16 16 C -0.25 -13.91 10.03 84.03 0.84 -13.07 16 17 H 0.05 2.95 8.06 -2.91 -0.02 2.93 16 18 C -0.04 -2.28 5.23 84.86 0.44 -1.84 16 19 N -0.96 -60.55 13.97 21.65 0.30 -60.24 16 20 Si 0.95 46.01 24.34 68.60 1.67 47.68 16 21 H -0.27 -12.56 6.62 99.48 0.66 -11.90 16 22 H -0.31 -15.61 7.11 99.48 0.71 -14.90 16 23 H -0.26 -11.72 6.64 99.48 0.66 -11.06 16 24 C 0.12 4.69 4.21 86.36 0.36 5.05 16 25 C -0.12 -3.59 5.36 30.67 0.16 -3.42 16 26 H 0.07 0.50 8.14 -2.38 -0.02 0.48 16 27 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 28 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.42 7.38 7.55 -92.70 -0.70 6.68 16 32 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.12 1.30 8.14 -2.38 -0.02 1.28 16 34 H 0.42 3.80 7.65 -92.71 -0.71 3.09 16 35 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 38 H 0.09 1.63 7.16 -2.38 -0.02 1.61 16 39 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.05 1.81 7.93 -2.39 -0.02 1.80 16 42 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 43 H 0.04 2.00 4.50 -2.39 -0.01 1.99 16 44 H 0.04 1.38 7.07 -2.39 -0.02 1.37 16 45 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -76.50 369.67 -0.01 -76.51 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -0.51 Total: 12.82 kcal Atomic # 6 Polarization: 11.27 SS G_CDS: 6.49 Total: 17.76 kcal Atomic # 7 Polarization: -110.75 SS G_CDS: -7.36 Total: -118.11 kcal Atomic # 8 Polarization: -36.36 SS G_CDS: -0.30 Total: -36.65 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 1.67 Total: 47.68 kcal Total: -76.50 -0.01 -76.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492152927.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.020 kcal (2) G-P(sol) polarization free energy of solvation -76.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds