Wall clock time and date at job start Fri Apr 10 2020 18:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47188 * 2 1 4 4 N 1.46905 * 109.47195 * 179.97438 * 3 2 1 5 5 C 1.47847 * 110.99882 * 50.38199 * 4 3 2 6 6 C 1.54907 * 104.79186 * 146.36164 * 5 4 3 7 7 C 1.55133 * 101.65634 * 322.93442 * 6 5 4 8 8 C 1.47444 * 110.99761 * 171.22945 * 4 3 2 9 9 H 1.08994 * 109.88817 * 117.34171 * 8 4 3 10 10 C 1.52989 * 109.88977 * 356.30757 * 8 4 3 11 11 N 1.46904 * 109.47377 * 63.54147 * 10 8 4 12 12 C 1.46902 * 111.00314 * 179.97438 * 11 10 8 13 13 C 1.52998 * 109.47186 * 179.97438 * 12 11 10 14 14 H 1.09000 * 109.47173 * 305.00132 * 13 12 11 15 15 O 1.42901 * 109.46959 * 65.00178 * 13 12 11 16 16 C 1.52995 * 109.47400 * 184.99851 * 13 12 11 17 17 N 1.46897 * 109.47447 * 178.34172 * 16 13 12 18 18 C 1.46903 * 111.00026 * 164.16927 * 17 16 13 19 19 C 1.46892 * 111.00008 * 288.12666 * 17 16 13 20 20 C 1.50706 * 109.47296 * 169.99896 * 19 17 16 21 21 H 1.08004 * 119.99582 * 359.97438 * 20 19 17 22 22 C 1.37875 * 120.00462 * 179.97438 * 20 19 17 23 23 N 1.31513 * 119.99735 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00057 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47299 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47180 * 120.00278 * 24 22 20 27 27 H 1.48506 * 109.46949 * 240.00093 * 24 22 20 28 28 H 1.09004 * 109.47133 * 300.00663 * 1 2 3 29 29 H 1.09002 * 109.46960 * 59.99973 * 1 2 3 30 30 H 1.08994 * 109.47150 * 179.97438 * 1 2 3 31 31 H 1.08990 * 109.47350 * 239.99884 * 2 1 3 32 32 H 1.09002 * 109.46960 * 120.00027 * 2 1 3 33 33 H 1.09004 * 109.47123 * 59.99801 * 3 2 1 34 34 H 1.09002 * 109.47192 * 299.99885 * 3 2 1 35 35 H 1.08996 * 110.37547 * 265.19770 * 5 4 3 36 36 H 1.09005 * 110.37195 * 27.42701 * 5 4 3 37 37 H 1.08998 * 110.98596 * 81.02425 * 6 5 4 38 38 H 1.09005 * 110.99023 * 204.83891 * 6 5 4 39 39 H 1.09005 * 110.70389 * 277.26771 * 7 6 5 40 40 H 1.08997 * 110.70801 * 154.03366 * 7 6 5 41 41 H 1.09000 * 109.47154 * 183.54034 * 10 8 4 42 42 H 1.08999 * 109.47787 * 303.54201 * 10 8 4 43 43 H 1.00904 * 110.99401 * 56.04465 * 11 10 8 44 44 H 1.09003 * 109.46832 * 300.00080 * 12 11 10 45 45 H 1.08994 * 109.47184 * 59.99856 * 12 11 10 46 46 H 0.96701 * 114.00508 * 59.99802 * 15 13 12 47 47 H 1.09006 * 109.47195 * 298.34625 * 16 13 12 48 48 H 1.08999 * 109.46825 * 58.34023 * 16 13 12 49 49 H 1.08997 * 109.46768 * 65.16328 * 18 17 16 50 50 H 1.08997 * 109.46843 * 185.16444 * 18 17 16 51 51 H 1.08999 * 109.47179 * 305.16634 * 18 17 16 52 52 H 1.08997 * 109.47399 * 289.99847 * 19 17 16 53 53 H 1.09003 * 109.47359 * 49.99775 * 19 17 16 54 54 H 0.96995 * 120.00034 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5091 1.4425 0.0006 5 6 4.0394 0.5622 -1.0623 6 6 5.3454 1.2507 -1.5311 7 6 4.9565 2.7502 -1.4478 8 6 4.0375 2.8029 -0.2093 9 1 4.6095 3.1173 0.6637 10 6 2.8838 3.7774 -0.4540 11 7 2.0359 3.8432 0.7438 12 6 0.9153 4.7721 0.5453 13 6 0.0565 4.8131 1.8108 14 1 -0.2577 3.8020 2.0696 15 8 0.8189 5.3650 2.8861 16 6 -1.1775 5.6827 1.5619 17 7 -2.0220 5.6900 2.7638 18 6 -3.0004 6.7847 2.7131 19 6 -2.6904 4.3946 2.9454 20 6 -3.3454 4.3530 4.3020 21 1 -3.2721 5.2038 4.9633 22 6 -4.0382 3.2290 4.6990 23 7 -4.1279 2.1933 3.8935 24 14 -4.8507 3.1779 6.3802 25 1 -4.6047 4.4600 7.0881 26 1 -6.3126 2.9743 6.2175 27 1 -4.2801 2.0585 7.1719 28 1 -0.3633 0.5140 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6767 1.9564 -0.8900 35 1 4.2550 -0.4284 -0.6621 36 1 3.3289 0.4915 -1.8860 37 1 6.1706 1.0233 -0.8562 38 1 5.5906 0.9671 -2.5546 39 1 4.4155 3.0583 -2.3426 40 1 5.8406 3.3699 -1.2983 41 1 3.2844 4.7677 -0.6704 42 1 2.2903 3.4327 -1.3007 43 1 2.5771 4.0984 1.5563 44 1 1.3027 5.7693 0.3361 45 1 0.3081 4.4346 -0.2946 46 1 1.1323 6.2654 2.7246 47 1 -0.8640 6.7010 1.3319 48 1 -1.7434 5.2785 0.7226 49 1 -3.6960 6.6124 1.8919 50 1 -3.5505 6.8240 3.6533 51 1 -2.4804 7.7297 2.5566 52 1 -3.4476 4.2648 2.1722 53 1 -1.9553 3.5930 2.8721 54 1 -4.6150 1.4024 4.1729 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583808483.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:05 Heat of formation + Delta-G solvation = -57.003750 kcal Electronic energy + Delta-G solvation = -27900.456190 eV Core-core repulsion = 24292.337580 eV Total energy + Delta-G solvation = -3608.118611 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 313.247 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.78380 -39.45354 -37.37184 -35.89575 -35.29822 -34.59298 -32.00518 -31.35426 -30.12900 -29.24481 -27.08609 -26.22298 -25.55184 -24.34626 -23.09917 -22.77964 -21.69420 -21.50644 -20.18583 -18.61382 -17.74576 -17.34791 -17.04620 -16.60253 -16.53287 -16.26212 -16.01011 -15.87610 -15.49802 -15.00610 -14.93086 -14.63505 -14.33812 -14.03487 -13.98672 -13.81505 -13.57537 -13.26403 -13.11269 -13.10170 -12.86670 -12.77699 -12.58474 -12.54756 -12.41471 -12.29769 -12.16049 -12.04352 -11.92013 -11.88880 -11.58920 -11.54179 -11.52486 -11.47562 -11.28592 -10.71091 -10.59445 -9.08685 -9.00992 -8.94954 -8.18835 -6.27995 1.39578 1.41400 1.54411 2.41086 2.89313 3.13467 3.18492 3.45456 3.72188 3.74210 3.82762 3.95421 3.99924 4.17036 4.20390 4.23240 4.30487 4.35905 4.36914 4.46541 4.50974 4.58309 4.60892 4.61271 4.64638 4.66396 4.77508 4.78796 4.82055 4.92847 4.96425 4.98915 5.06258 5.07932 5.10053 5.13862 5.19826 5.27344 5.31638 5.32999 5.38264 5.44207 5.66192 5.70124 5.99273 6.08565 6.28136 6.34391 6.35636 6.44670 6.65985 6.87699 7.07056 7.41115 8.92390 Molecular weight = 313.25amu Principal moments of inertia in cm(-1) A = 0.015121 B = 0.003166 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.267890 B = 8840.580379 C =10083.032238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.122 4.122 3 C 0.053 3.947 4 N -0.532 5.532 5 C 0.035 3.965 6 C -0.124 4.124 7 C -0.131 4.131 8 C 0.074 3.926 9 H 0.078 0.922 10 C 0.048 3.952 11 N -0.682 5.682 12 C 0.044 3.956 13 C 0.127 3.873 14 H 0.063 0.937 15 O -0.559 6.559 16 C 0.027 3.973 17 N -0.542 5.542 18 C 0.041 3.959 19 C 0.211 3.789 20 C -0.521 4.521 21 H 0.060 0.940 22 C 0.000 4.000 23 N -0.933 5.933 24 Si 0.967 3.033 25 H -0.264 1.264 26 H -0.277 1.277 27 H -0.279 1.279 28 H 0.035 0.965 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.103 0.897 34 H 0.027 0.973 35 H 0.073 0.927 36 H 0.041 0.959 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.087 0.913 41 H 0.048 0.952 42 H 0.068 0.932 43 H 0.348 0.652 44 H 0.055 0.945 45 H 0.073 0.927 46 H 0.379 0.621 47 H 0.096 0.904 48 H 0.025 0.975 49 H 0.007 0.993 50 H 0.054 0.946 51 H 0.083 0.917 52 H -0.043 1.043 53 H 0.005 0.995 54 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.576 3.336 -14.422 23.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.160 4.160 3 C -0.075 4.075 4 N -0.256 5.256 5 C -0.092 4.092 6 C -0.162 4.162 7 C -0.170 4.170 8 C -0.035 4.035 9 H 0.096 0.904 10 C -0.081 4.081 11 N -0.314 5.314 12 C -0.086 4.086 13 C 0.067 3.933 14 H 0.081 0.919 15 O -0.364 6.364 16 C -0.102 4.102 17 N -0.266 5.266 18 C -0.107 4.107 19 C 0.085 3.915 20 C -0.560 4.560 21 H 0.078 0.922 22 C -0.197 4.197 23 N -0.573 5.573 24 Si 0.792 3.208 25 H -0.188 1.188 26 H -0.202 1.202 27 H -0.205 1.205 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.121 0.879 34 H 0.045 0.955 35 H 0.091 0.909 36 H 0.059 0.941 37 H 0.094 0.906 38 H 0.104 0.896 39 H 0.090 0.910 40 H 0.106 0.894 41 H 0.067 0.933 42 H 0.086 0.914 43 H 0.167 0.833 44 H 0.073 0.927 45 H 0.091 0.909 46 H 0.226 0.774 47 H 0.115 0.885 48 H 0.043 0.957 49 H 0.026 0.974 50 H 0.073 0.927 51 H 0.101 0.899 52 H -0.026 1.026 53 H 0.023 0.977 54 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 18.460 1.952 -13.438 22.917 hybrid contribution -1.247 0.932 -0.883 1.790 sum 17.213 2.883 -14.321 22.576 Atomic orbital electron populations 1.21655 0.96162 1.01475 1.01087 1.21640 0.95099 0.97729 1.01509 1.22708 0.86766 0.95168 1.02851 1.63735 1.08432 1.07896 1.45586 1.23121 0.95824 0.97611 0.92681 1.22682 0.97019 0.94429 1.02079 1.22792 0.99621 0.97496 0.97053 1.22495 0.94407 0.88235 0.98343 0.90369 1.22383 0.94100 0.98495 0.93139 1.60784 1.12574 1.51963 1.06111 1.22451 0.93526 0.95323 0.97294 1.21676 0.88971 0.96264 0.86408 0.91897 1.86664 1.72286 1.34255 1.43213 1.22791 0.95161 1.01126 0.91142 1.61946 1.23104 1.04790 1.36741 1.22216 0.94432 0.93971 1.00070 1.19364 0.90872 0.86594 0.94698 1.21492 1.31904 1.00912 1.01653 0.92211 1.25900 0.97193 0.95115 1.01534 1.70091 1.43421 1.05630 1.38205 0.85370 0.77929 0.78369 0.79173 1.18781 1.20242 1.20509 0.94613 0.92915 0.92291 0.91812 0.92744 0.87950 0.95489 0.90890 0.94076 0.90632 0.89571 0.91050 0.89420 0.93339 0.91380 0.83292 0.92715 0.90887 0.77367 0.88539 0.95717 0.97440 0.92743 0.89867 1.02584 0.97701 0.92796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.11 9.91 71.98 0.71 -3.39 16 2 C -0.12 -3.13 5.63 30.60 0.17 -2.96 16 3 C 0.05 1.36 3.63 86.30 0.31 1.68 16 4 N -0.53 -11.99 5.31 -860.53 -4.57 -16.55 16 5 C 0.04 0.65 5.31 86.77 0.46 1.11 16 6 C -0.12 -1.70 7.08 31.98 0.23 -1.48 16 7 C -0.13 -1.76 6.47 31.77 0.21 -1.55 16 8 C 0.07 1.36 3.63 45.26 0.16 1.52 16 9 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 10 C 0.05 0.89 4.27 86.30 0.37 1.26 16 11 N -0.68 -15.70 3.26 -513.90 -1.68 -17.37 16 12 C 0.04 1.03 5.36 86.30 0.46 1.49 16 13 C 0.13 4.09 3.23 30.59 0.10 4.19 16 14 H 0.06 2.68 6.54 -2.39 -0.02 2.66 16 15 O -0.56 -17.89 12.75 -148.98 -1.90 -19.79 16 16 C 0.03 0.90 4.63 86.30 0.40 1.30 16 17 N -0.54 -23.62 4.61 -927.07 -4.27 -27.89 16 18 C 0.04 1.58 9.33 127.69 1.19 2.77 16 19 C 0.21 11.61 4.57 85.56 0.39 12.01 16 20 C -0.52 -30.69 8.53 25.60 0.22 -30.47 16 21 H 0.06 3.48 7.10 -2.91 -0.02 3.46 16 22 C 0.00 0.03 5.46 84.65 0.46 0.49 16 23 N -0.93 -57.76 13.29 21.45 0.28 -57.48 16 24 Si 0.97 45.84 29.54 68.60 2.03 47.87 16 25 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 26 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 27 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 28 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 29 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.06 1.44 6.54 -2.39 -0.02 1.42 16 32 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.10 3.21 5.78 -2.38 -0.01 3.19 16 34 H 0.03 0.70 5.84 -2.39 -0.01 0.68 16 35 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.04 0.77 7.09 -2.38 -0.02 0.75 16 37 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 39 H 0.07 0.91 7.86 -2.38 -0.02 0.89 16 40 H 0.09 0.94 8.14 -2.39 -0.02 0.93 16 41 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.07 1.36 6.35 -2.39 -0.02 1.35 16 43 H 0.35 8.26 8.29 -89.69 -0.74 7.52 16 44 H 0.05 1.00 8.14 -2.39 -0.02 0.99 16 45 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.38 8.45 9.05 -74.06 -0.67 7.78 16 47 H 0.10 2.52 7.88 -2.38 -0.02 2.50 16 48 H 0.02 0.87 8.05 -2.39 -0.02 0.85 16 49 H 0.01 0.27 8.13 -2.39 -0.02 0.25 16 50 H 0.05 2.27 6.89 -2.39 -0.02 2.26 16 51 H 0.08 2.49 7.98 -2.39 -0.02 2.47 16 52 H -0.04 -2.60 8.12 -2.39 -0.02 -2.61 16 53 H 0.00 0.30 6.37 -2.39 -0.02 0.28 16 54 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -69.07 406.98 -4.81 -73.87 By element: Atomic # 1 Polarization: 29.93 SS G_CDS: -0.55 Total: 29.38 kcal Atomic # 6 Polarization: -17.89 SS G_CDS: 5.85 Total: -12.04 kcal Atomic # 7 Polarization: -109.06 SS G_CDS: -10.23 Total: -119.29 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -1.90 Total: -19.79 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -69.07 -4.81 -73.87 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583808483.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.868 kcal (2) G-P(sol) polarization free energy of solvation -69.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds