Wall clock time and date at job start Fri Apr 10 2020 18:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47079 * 2 1 4 4 C 1.53007 * 109.46742 * 240.00389 * 2 1 3 5 5 Si 1.86301 * 109.47166 * 120.00492 * 2 1 3 6 6 C 1.86299 * 109.46900 * 299.99801 * 5 2 1 7 7 C 1.86305 * 109.46986 * 179.97438 * 5 2 1 8 8 O 1.63098 * 109.47052 * 60.00159 * 5 2 1 9 9 C 1.42899 * 113.99773 * 180.02562 * 8 5 2 10 10 H 1.08998 * 109.52754 * 329.91381 * 9 8 5 11 11 C 1.53037 * 109.49667 * 209.83534 * 9 8 5 12 12 C 1.53042 * 109.54149 * 178.68082 * 11 9 8 13 13 C 1.52763 * 109.38240 * 61.23722 * 12 11 9 14 14 N 1.46926 * 109.00910 * 305.59181 * 13 12 11 15 15 C 1.34772 * 120.63357 * 233.58196 * 14 13 12 16 16 O 1.21680 * 120.00652 * 185.03189 * 15 14 13 17 17 C 1.46379 * 119.99584 * 5.02906 * 15 14 13 18 18 H 1.07996 * 120.00339 * 353.88487 * 17 15 14 19 19 C 1.40045 * 119.99981 * 174.16036 * 17 15 14 20 20 N 1.30681 * 119.99973 * 359.72521 * 19 17 15 21 21 Si 1.86797 * 120.00283 * 179.72405 * 19 17 15 22 22 H 1.48504 * 109.46926 * 59.99848 * 21 19 17 23 23 H 1.48496 * 109.47378 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47151 * 300.00344 * 21 19 17 25 25 C 1.46934 * 118.73916 * 53.30787 * 14 13 12 26 26 H 1.09001 * 109.46942 * 299.99424 * 1 2 3 27 27 H 1.09001 * 109.47173 * 59.99765 * 1 2 3 28 28 H 1.09003 * 109.47299 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46735 * 179.97438 * 3 2 1 30 30 H 1.08992 * 109.47471 * 300.00269 * 3 2 1 31 31 H 1.09001 * 109.46763 * 60.00467 * 3 2 1 32 32 H 1.08990 * 109.47037 * 299.99515 * 4 2 1 33 33 H 1.08996 * 109.46802 * 60.00319 * 4 2 1 34 34 H 1.09003 * 109.46628 * 179.97438 * 4 2 1 35 35 H 1.09001 * 109.47106 * 180.02562 * 6 5 2 36 36 H 1.09003 * 109.47263 * 299.99869 * 6 5 2 37 37 H 1.08993 * 109.46873 * 60.00224 * 6 5 2 38 38 H 1.09001 * 109.47150 * 300.00102 * 7 5 2 39 39 H 1.08998 * 109.46677 * 59.99683 * 7 5 2 40 40 H 1.08992 * 109.47009 * 179.97438 * 7 5 2 41 41 H 1.09000 * 109.46059 * 298.70102 * 11 9 8 42 42 H 1.08998 * 109.46309 * 58.67579 * 11 9 8 43 43 H 1.08993 * 109.49761 * 181.31545 * 12 11 9 44 44 H 1.08999 * 109.49743 * 301.41963 * 12 11 9 45 45 H 1.08992 * 109.50987 * 185.70655 * 13 12 11 46 46 H 1.08999 * 109.42923 * 65.42436 * 13 12 11 47 47 H 0.96995 * 119.99717 * 179.97438 * 20 19 17 48 48 H 1.09003 * 109.58344 * 66.42728 * 25 14 13 49 49 H 1.08998 * 109.58397 * 186.85209 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 14 2.1510 -0.8784 1.5211 6 6 1.5300 -0.0002 3.0422 7 6 4.0140 -0.8790 1.5206 8 8 1.6074 -2.4161 1.5209 9 6 2.0286 -3.1815 2.6517 10 1 2.9975 -2.8200 2.9959 11 6 2.1445 -4.6554 2.2563 12 6 2.6272 -5.4713 3.4577 13 6 1.6109 -5.3531 4.5921 14 7 1.3797 -3.9313 4.8813 15 6 1.5187 -3.4539 6.1340 16 8 1.2363 -2.2959 6.3787 17 6 2.0095 -4.3285 7.2002 18 1 2.1661 -5.3795 7.0073 19 6 2.2703 -3.8036 8.4721 20 7 2.0808 -2.5318 8.7055 21 14 2.8892 -4.9212 9.8349 22 1 4.1802 -5.5312 9.4268 23 1 3.0860 -4.1278 11.0747 24 1 1.8929 -5.9933 10.0867 25 6 1.0000 -3.0385 3.7779 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1299 1.4425 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.6766 -1.7488 -1.2494 33 1 1.6766 -0.2073 -2.1392 34 1 3.1299 -0.7208 -1.2496 35 1 1.8937 -0.5138 3.9322 36 1 1.8934 1.0275 3.0423 37 1 0.4401 -0.0002 3.0422 38 1 4.3770 -1.3930 0.6306 39 1 4.3776 0.1485 1.5204 40 1 4.3774 -1.3925 2.4107 41 1 1.1698 -5.0231 1.9356 42 1 2.8579 -4.7570 1.4385 43 1 2.7319 -6.5170 3.1689 44 1 3.5904 -5.0880 3.7944 45 1 1.9992 -5.8486 5.4818 46 1 0.6742 -5.8215 4.2899 47 1 2.2611 -2.1684 9.5865 48 1 0.0124 -3.3144 3.4080 49 1 0.9854 -2.0073 4.1307 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585088195.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:19 Heat of formation + Delta-G solvation = -134.859596 kcal Electronic energy + Delta-G solvation = -25706.287285 eV Core-core repulsion = 22289.873193 eV Total energy + Delta-G solvation = -3416.414092 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.186 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -38.93565 -36.69750 -35.97364 -34.83992 -32.59228 -31.24662 -29.71133 -28.27301 -27.98308 -26.99374 -26.47163 -26.30960 -24.12750 -22.31234 -20.56646 -19.52987 -18.88375 -16.89384 -16.20185 -15.78697 -15.17320 -14.69568 -14.56613 -14.28621 -14.00811 -13.97715 -13.88046 -13.15920 -12.99042 -12.86080 -12.66676 -12.53515 -12.42838 -12.27770 -12.11195 -11.97131 -11.87719 -11.73124 -11.52815 -11.50736 -11.14853 -11.04437 -10.92454 -10.87134 -10.80035 -10.69368 -10.54225 -10.27123 -10.10950 -9.87981 -9.67641 -9.19025 -9.09339 -8.86220 -7.60645 -7.22487 -6.21688 -4.66417 2.55377 2.80366 3.13774 3.14410 3.19399 3.20721 3.64041 4.07404 4.53648 4.58109 4.98251 4.99014 5.16879 5.26296 5.32376 5.40861 5.54252 5.61025 5.64019 5.67886 5.71471 5.75666 5.78688 5.82652 5.90036 5.93782 5.98082 6.00028 6.04377 6.06618 6.13686 6.15572 6.21669 6.28838 6.29671 6.34465 6.42769 6.52878 6.54872 6.58631 6.66480 6.90215 6.96182 7.44264 7.61925 8.12106 8.33067 9.00282 9.41284 10.55464 10.73844 Molecular weight = 313.19amu Principal moments of inertia in cm(-1) A = 0.020953 B = 0.003817 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.012511 B = 7334.696146 C = 7980.302101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.373 4.373 3 C -0.135 4.135 4 C -0.131 4.131 5 Si 1.279 2.721 6 C -0.513 4.513 7 C -0.509 4.509 8 O -0.623 6.623 9 C 0.105 3.895 10 H 0.058 0.942 11 C -0.112 4.112 12 C -0.136 4.136 13 C 0.117 3.883 14 N -0.639 5.639 15 C 0.559 3.441 16 O -0.576 6.576 17 C -0.545 4.545 18 H 0.074 0.926 19 C 0.088 3.912 20 N -0.768 5.768 21 Si 0.906 3.094 22 H -0.268 1.268 23 H -0.281 1.281 24 H -0.268 1.268 25 C 0.087 3.913 26 H 0.056 0.944 27 H 0.049 0.951 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.049 0.951 34 H 0.052 0.948 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.062 0.938 43 H 0.069 0.931 44 H 0.066 0.934 45 H 0.095 0.905 46 H 0.043 0.957 47 H 0.269 0.731 48 H 0.052 0.948 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.604 0.610 -16.398 16.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.416 4.416 3 C -0.192 4.192 4 C -0.188 4.188 5 Si 1.409 2.591 6 C -0.614 4.614 7 C -0.610 4.610 8 O -0.582 6.582 9 C 0.047 3.953 10 H 0.076 0.924 11 C -0.150 4.150 12 C -0.175 4.175 13 C -0.007 4.007 14 N -0.378 5.378 15 C 0.365 3.635 16 O -0.458 6.458 17 C -0.581 4.581 18 H 0.092 0.908 19 C -0.132 4.132 20 N -0.396 5.396 21 Si 0.731 3.269 22 H -0.193 1.193 23 H -0.206 1.206 24 H -0.192 1.192 25 C -0.037 4.037 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.113 0.887 46 H 0.061 0.939 47 H 0.080 0.920 48 H 0.070 0.930 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.290 1.243 -16.265 16.364 hybrid contribution 0.593 -0.130 0.721 0.942 sum 1.883 1.113 -15.545 15.698 Atomic orbital electron populations 1.21492 0.93898 1.02083 1.01487 1.25734 1.00641 1.02465 1.12794 1.21538 1.00658 0.95133 1.01864 1.21491 1.00468 1.00288 0.96586 0.76881 0.63139 0.54405 0.64641 1.27242 1.06835 1.08902 1.18451 1.27021 1.25465 1.04240 1.04310 1.85324 1.79378 1.45781 1.47683 1.22009 0.97046 0.91987 0.84239 0.92425 1.21605 1.01988 0.93551 0.97855 1.21922 1.00377 0.99427 0.95767 1.21407 0.96713 0.84344 0.98267 1.48159 1.74913 1.06975 1.07781 1.18267 0.77543 0.87701 0.79986 1.90593 1.54725 1.19415 1.81097 1.20944 1.47020 0.95650 0.94499 0.90846 1.25724 0.93469 0.94920 0.99077 1.70003 1.35227 1.12566 1.21833 0.86458 0.79835 0.80572 0.80056 1.19254 1.20581 1.19233 1.21892 0.96148 0.98348 0.87357 0.92533 0.93236 0.92081 0.92674 0.92904 0.92403 0.92137 0.93215 0.92874 0.89805 0.91545 0.91077 0.91329 0.91101 0.91149 0.91247 0.91964 0.91275 0.91554 0.88661 0.93879 0.92029 0.93005 0.88410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.45 7.85 37.16 0.29 -1.15 16 2 C -0.37 -4.05 0.53 -90.62 -0.05 -4.10 16 3 C -0.13 -1.33 7.85 37.16 0.29 -1.04 16 4 C -0.13 -1.32 7.85 37.16 0.29 -1.03 16 5 Si 1.28 16.41 8.07 -169.99 -1.37 15.03 16 6 C -0.51 -7.96 7.52 101.05 0.76 -7.20 16 7 C -0.51 -6.43 8.56 101.05 0.87 -5.56 16 8 O -0.62 -9.18 8.28 -35.23 -0.29 -9.47 16 9 C 0.10 1.74 2.30 -26.61 -0.06 1.68 16 10 H 0.06 0.99 6.16 -51.93 -0.32 0.67 16 11 C -0.11 -1.63 5.54 -26.69 -0.15 -1.78 16 12 C -0.14 -2.03 6.07 -26.83 -0.16 -2.19 16 13 C 0.12 2.13 6.32 -3.93 -0.02 2.11 16 14 N -0.64 -14.43 2.98 -174.69 -0.52 -14.95 16 15 C 0.56 15.69 7.61 -12.99 -0.10 15.59 16 16 O -0.58 -18.32 14.48 5.21 0.08 -18.24 16 17 C -0.54 -14.95 8.87 -35.63 -0.32 -15.27 16 18 H 0.07 1.82 5.65 -52.49 -0.30 1.52 16 19 C 0.09 2.41 5.50 -17.36 -0.10 2.31 16 20 N -0.77 -22.65 11.85 55.55 0.66 -22.00 16 21 Si 0.91 19.73 29.56 -169.99 -5.02 14.70 16 22 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 23 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 25 C 0.09 1.75 5.75 -3.71 -0.02 1.72 16 26 H 0.06 0.61 7.79 -51.93 -0.40 0.21 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.68 7.97 -51.93 -0.41 0.27 16 29 H 0.05 0.50 7.79 -51.93 -0.40 0.09 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.56 7.79 -51.93 -0.40 0.15 16 32 H 0.06 0.62 7.96 -51.93 -0.41 0.21 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.05 0.49 7.79 -51.93 -0.40 0.09 16 35 H 0.08 1.59 6.34 -51.93 -0.33 1.26 16 36 H 0.07 0.92 7.79 -51.93 -0.40 0.51 16 37 H 0.07 1.09 7.79 -51.93 -0.40 0.69 16 38 H 0.07 0.79 7.79 -51.93 -0.40 0.38 16 39 H 0.07 0.81 7.79 -51.93 -0.40 0.40 16 40 H 0.07 0.98 7.10 -51.93 -0.37 0.61 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.10 1.80 5.30 -51.93 -0.28 1.53 16 46 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.27 7.24 8.29 -40.82 -0.34 6.90 16 48 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 49 H 0.10 2.15 3.82 -51.93 -0.20 1.95 16 LS Contribution 378.84 15.07 5.71 5.71 Total: -1.00 -32.80 378.84 -8.03 -40.83 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -8.79 Total: 4.30 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: 1.52 Total: -15.92 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: 0.14 Total: -36.94 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: -0.22 Total: -27.71 kcal Atomic # 14 Polarization: 36.13 SS G_CDS: -6.40 Total: 29.74 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.80 -8.03 -40.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585088195.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.030 kcal (2) G-P(sol) polarization free energy of solvation -32.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds