Wall clock time and date at job start Fri Apr 10 2020 18:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47079 * 2 1 4 4 C 1.53007 * 109.46742 * 240.00389 * 2 1 3 5 5 Si 1.86301 * 109.47166 * 120.00492 * 2 1 3 6 6 C 1.86299 * 109.46900 * 299.99801 * 5 2 1 7 7 C 1.86305 * 109.46986 * 179.97438 * 5 2 1 8 8 O 1.63098 * 109.47052 * 60.00159 * 5 2 1 9 9 C 1.42899 * 113.99773 * 180.02562 * 8 5 2 10 10 H 1.08998 * 109.52754 * 329.91381 * 9 8 5 11 11 C 1.53037 * 109.49667 * 209.83534 * 9 8 5 12 12 C 1.53042 * 109.54149 * 178.68082 * 11 9 8 13 13 C 1.52763 * 109.38240 * 61.23722 * 12 11 9 14 14 N 1.46926 * 109.00910 * 305.59181 * 13 12 11 15 15 C 1.34772 * 120.63357 * 233.58196 * 14 13 12 16 16 O 1.21680 * 120.00652 * 185.03189 * 15 14 13 17 17 C 1.46379 * 119.99584 * 5.02906 * 15 14 13 18 18 H 1.07996 * 120.00339 * 353.88487 * 17 15 14 19 19 C 1.40045 * 119.99981 * 174.16036 * 17 15 14 20 20 N 1.30681 * 119.99973 * 359.72521 * 19 17 15 21 21 Si 1.86797 * 120.00283 * 179.72405 * 19 17 15 22 22 H 1.48504 * 109.46926 * 59.99848 * 21 19 17 23 23 H 1.48496 * 109.47378 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47151 * 300.00344 * 21 19 17 25 25 C 1.46934 * 118.73916 * 53.30787 * 14 13 12 26 26 H 1.09001 * 109.46942 * 299.99424 * 1 2 3 27 27 H 1.09001 * 109.47173 * 59.99765 * 1 2 3 28 28 H 1.09003 * 109.47299 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46735 * 179.97438 * 3 2 1 30 30 H 1.08992 * 109.47471 * 300.00269 * 3 2 1 31 31 H 1.09001 * 109.46763 * 60.00467 * 3 2 1 32 32 H 1.08990 * 109.47037 * 299.99515 * 4 2 1 33 33 H 1.08996 * 109.46802 * 60.00319 * 4 2 1 34 34 H 1.09003 * 109.46628 * 179.97438 * 4 2 1 35 35 H 1.09001 * 109.47106 * 180.02562 * 6 5 2 36 36 H 1.09003 * 109.47263 * 299.99869 * 6 5 2 37 37 H 1.08993 * 109.46873 * 60.00224 * 6 5 2 38 38 H 1.09001 * 109.47150 * 300.00102 * 7 5 2 39 39 H 1.08998 * 109.46677 * 59.99683 * 7 5 2 40 40 H 1.08992 * 109.47009 * 179.97438 * 7 5 2 41 41 H 1.09000 * 109.46059 * 298.70102 * 11 9 8 42 42 H 1.08998 * 109.46309 * 58.67579 * 11 9 8 43 43 H 1.08993 * 109.49761 * 181.31545 * 12 11 9 44 44 H 1.08999 * 109.49743 * 301.41963 * 12 11 9 45 45 H 1.08992 * 109.50987 * 185.70655 * 13 12 11 46 46 H 1.08999 * 109.42923 * 65.42436 * 13 12 11 47 47 H 0.96995 * 119.99717 * 179.97438 * 20 19 17 48 48 H 1.09003 * 109.58344 * 66.42728 * 25 14 13 49 49 H 1.08998 * 109.58397 * 186.85209 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 14 2.1510 -0.8784 1.5211 6 6 1.5300 -0.0002 3.0422 7 6 4.0140 -0.8790 1.5206 8 8 1.6074 -2.4161 1.5209 9 6 2.0286 -3.1815 2.6517 10 1 2.9975 -2.8200 2.9959 11 6 2.1445 -4.6554 2.2563 12 6 2.6272 -5.4713 3.4577 13 6 1.6109 -5.3531 4.5921 14 7 1.3797 -3.9313 4.8813 15 6 1.5187 -3.4539 6.1340 16 8 1.2363 -2.2959 6.3787 17 6 2.0095 -4.3285 7.2002 18 1 2.1661 -5.3795 7.0073 19 6 2.2703 -3.8036 8.4721 20 7 2.0808 -2.5318 8.7055 21 14 2.8892 -4.9212 9.8349 22 1 4.1802 -5.5312 9.4268 23 1 3.0860 -4.1278 11.0747 24 1 1.8929 -5.9933 10.0867 25 6 1.0000 -3.0385 3.7779 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1299 1.4425 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.6766 -1.7488 -1.2494 33 1 1.6766 -0.2073 -2.1392 34 1 3.1299 -0.7208 -1.2496 35 1 1.8937 -0.5138 3.9322 36 1 1.8934 1.0275 3.0423 37 1 0.4401 -0.0002 3.0422 38 1 4.3770 -1.3930 0.6306 39 1 4.3776 0.1485 1.5204 40 1 4.3774 -1.3925 2.4107 41 1 1.1698 -5.0231 1.9356 42 1 2.8579 -4.7570 1.4385 43 1 2.7319 -6.5170 3.1689 44 1 3.5904 -5.0880 3.7944 45 1 1.9992 -5.8486 5.4818 46 1 0.6742 -5.8215 4.2899 47 1 2.2611 -2.1684 9.5865 48 1 0.0124 -3.3144 3.4080 49 1 0.9854 -2.0073 4.1307 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585088195.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:18 Heat of formation + Delta-G solvation = -153.442458 kcal Electronic energy + Delta-G solvation = -25707.093098 eV Core-core repulsion = 22289.873193 eV Total energy + Delta-G solvation = -3417.219905 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.186 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.53002 -38.43406 -36.81863 -36.43288 -34.68266 -32.86336 -31.21023 -29.33365 -29.09644 -28.33632 -27.81306 -27.39268 -25.77003 -23.74548 -22.17295 -20.63859 -20.35002 -18.56642 -17.81199 -17.60096 -16.43815 -16.32102 -15.91577 -15.72781 -15.50975 -14.92482 -14.79614 -14.68053 -14.43600 -14.11050 -14.06229 -13.84908 -13.61905 -13.53280 -13.39368 -13.20927 -13.10725 -12.90987 -12.84912 -12.84727 -12.69586 -12.58228 -12.34878 -12.14381 -12.06237 -11.83944 -11.66553 -11.60361 -11.54119 -11.41196 -10.99752 -10.90903 -10.43671 -10.04620 -9.77994 -9.06356 -8.28606 -6.83144 1.38769 1.41821 1.44002 1.55222 1.80425 2.03078 2.24223 2.46364 2.53229 2.88515 3.58123 3.84608 3.99629 4.10795 4.16157 4.16906 4.24552 4.28337 4.53262 4.58208 4.62906 4.65641 4.71811 4.75347 4.77276 4.84169 4.87545 4.90976 4.98432 5.04890 5.07484 5.10599 5.13620 5.14811 5.21445 5.22870 5.32240 5.37507 5.42154 5.44168 5.51354 5.56959 5.61451 5.61886 5.80298 6.16529 6.39989 6.88509 7.43083 8.47066 8.67693 Molecular weight = 313.19amu Principal moments of inertia in cm(-1) A = 0.020953 B = 0.003817 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.012511 B = 7334.696146 C = 7980.302101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.356 4.356 3 C -0.141 4.141 4 C -0.134 4.134 5 Si 1.291 2.709 6 C -0.527 4.527 7 C -0.509 4.509 8 O -0.619 6.619 9 C 0.111 3.889 10 H 0.048 0.952 11 C -0.109 4.109 12 C -0.128 4.128 13 C 0.108 3.892 14 N -0.641 5.641 15 C 0.539 3.461 16 O -0.631 6.631 17 C -0.568 4.568 18 H 0.098 0.902 19 C 0.028 3.972 20 N -0.824 5.824 21 Si 0.995 3.005 22 H -0.251 1.251 23 H -0.278 1.278 24 H -0.254 1.254 25 C 0.081 3.919 26 H 0.048 0.952 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.037 0.963 36 H 0.075 0.925 37 H 0.060 0.940 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.051 0.949 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.110 0.890 44 H 0.054 0.946 45 H 0.086 0.914 46 H 0.062 0.938 47 H 0.273 0.727 48 H 0.058 0.942 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.824 -1.554 -18.754 19.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.402 4.402 3 C -0.198 4.198 4 C -0.191 4.191 5 Si 1.421 2.579 6 C -0.625 4.625 7 C -0.611 4.611 8 O -0.578 6.578 9 C 0.053 3.947 10 H 0.065 0.935 11 C -0.146 4.146 12 C -0.166 4.166 13 C -0.015 4.015 14 N -0.379 5.379 15 C 0.345 3.655 16 O -0.519 6.519 17 C -0.604 4.604 18 H 0.116 0.884 19 C -0.186 4.186 20 N -0.454 5.454 21 Si 0.815 3.185 22 H -0.175 1.175 23 H -0.203 1.203 24 H -0.178 1.178 25 C -0.043 4.043 26 H 0.067 0.933 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.057 0.943 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.106 0.894 39 H 0.102 0.898 40 H 0.070 0.930 41 H 0.098 0.902 42 H 0.109 0.891 43 H 0.128 0.872 44 H 0.073 0.927 45 H 0.104 0.896 46 H 0.081 0.919 47 H 0.083 0.917 48 H 0.076 0.924 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.495 -0.962 -18.635 18.826 hybrid contribution 0.127 0.609 1.432 1.561 sum 2.622 -0.353 -17.203 17.405 Atomic orbital electron populations 1.21549 0.94069 1.01955 1.01918 1.25445 1.00432 1.02894 1.11444 1.21610 1.01488 0.94300 1.02378 1.21532 1.01240 1.00111 0.96217 0.76806 0.63559 0.53371 0.64127 1.27576 1.06289 1.09802 1.18795 1.26977 1.24664 1.05148 1.04305 1.85330 1.79630 1.46409 1.46390 1.21828 0.94980 0.94204 0.83672 0.93459 1.21637 1.03447 0.91161 0.98401 1.21880 0.98359 1.01957 0.94416 1.21693 0.98845 0.81451 0.99494 1.48029 1.73834 1.09209 1.06851 1.18725 0.77418 0.87266 0.82048 1.90543 1.57040 1.21599 1.82691 1.21496 1.47033 0.96837 0.95051 0.88430 1.27010 0.92951 0.96544 1.02142 1.70201 1.36900 1.15416 1.22857 0.85106 0.79831 0.78010 0.75600 1.17452 1.20268 1.17758 1.22023 0.97871 0.96460 0.87979 0.93321 0.91636 0.92553 0.91555 0.91484 0.92878 0.92340 0.91887 0.91780 0.94340 0.90586 0.92080 0.89399 0.89844 0.93014 0.90187 0.89115 0.87151 0.92681 0.89563 0.91931 0.91734 0.92403 0.91418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 7.85 71.98 0.56 -2.27 16 2 C -0.36 -7.08 0.53 -10.79 -0.01 -7.09 16 3 C -0.14 -2.48 7.85 71.98 0.56 -1.91 16 4 C -0.13 -2.27 7.85 71.98 0.56 -1.71 16 5 Si 1.29 33.04 8.07 68.60 0.55 33.60 16 6 C -0.53 -17.97 7.52 113.37 0.85 -17.12 16 7 C -0.51 -12.33 8.56 113.37 0.97 -11.36 16 8 O -0.62 -17.86 8.28 -148.98 -1.23 -19.10 16 9 C 0.11 3.68 2.30 30.67 0.07 3.75 16 10 H 0.05 1.67 6.16 -2.39 -0.01 1.66 16 11 C -0.11 -2.87 5.54 30.62 0.17 -2.70 16 12 C -0.13 -3.48 6.07 30.53 0.19 -3.30 16 13 C 0.11 3.83 6.32 86.22 0.54 4.37 16 14 N -0.64 -30.00 2.98 -824.82 -2.46 -32.46 16 15 C 0.54 31.91 7.61 86.36 0.66 32.57 16 16 O -0.63 -43.30 14.48 -4.28 -0.06 -43.36 16 17 C -0.57 -32.00 8.87 24.83 0.22 -31.78 16 18 H 0.10 4.83 5.65 -2.91 -0.02 4.81 16 19 C 0.03 1.58 5.50 85.30 0.47 2.05 16 20 N -0.82 -51.00 11.85 21.84 0.26 -50.74 16 21 Si 1.00 40.70 29.56 68.60 2.03 42.73 16 22 H -0.25 -9.50 7.11 99.48 0.71 -8.79 16 23 H -0.28 -11.10 7.11 99.48 0.71 -10.39 16 24 H -0.25 -9.73 7.11 99.48 0.71 -9.03 16 25 C 0.08 3.40 5.75 86.36 0.50 3.90 16 26 H 0.05 1.05 7.79 -2.39 -0.02 1.04 16 27 H 0.06 1.14 8.14 -2.39 -0.02 1.13 16 28 H 0.06 1.20 7.97 -2.39 -0.02 1.18 16 29 H 0.07 1.02 7.79 -2.39 -0.02 1.00 16 30 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.05 0.97 7.79 -2.39 -0.02 0.95 16 32 H 0.06 1.02 7.96 -2.39 -0.02 1.01 16 33 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.06 0.96 7.79 -2.39 -0.02 0.94 16 35 H 0.04 1.64 6.34 -2.39 -0.02 1.62 16 36 H 0.08 2.30 7.79 -2.39 -0.02 2.28 16 37 H 0.06 2.10 7.79 -2.39 -0.02 2.08 16 38 H 0.09 1.79 7.79 -2.39 -0.02 1.77 16 39 H 0.08 1.79 7.79 -2.39 -0.02 1.77 16 40 H 0.05 1.45 7.10 -2.39 -0.02 1.43 16 41 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 44 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.09 3.19 5.30 -2.39 -0.01 3.18 16 46 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 47 H 0.27 15.38 8.29 -92.71 -0.77 14.61 16 48 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 49 H 0.07 3.27 3.82 -2.39 -0.01 3.26 16 Total: -1.00 -76.94 378.84 6.32 -70.62 By element: Atomic # 1 Polarization: 30.40 SS G_CDS: 0.91 Total: 31.30 kcal Atomic # 6 Polarization: -38.93 SS G_CDS: 6.33 Total: -32.60 kcal Atomic # 7 Polarization: -80.99 SS G_CDS: -2.20 Total: -83.19 kcal Atomic # 8 Polarization: -61.16 SS G_CDS: -1.30 Total: -62.46 kcal Atomic # 14 Polarization: 73.75 SS G_CDS: 2.58 Total: 76.33 kcal Total: -76.94 6.32 -70.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585088195.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.819 kcal (2) G-P(sol) polarization free energy of solvation -76.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds