Wall clock time and date at job start Fri Apr 10 2020 18:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47395 * 2 1 4 4 C 1.52997 * 109.46969 * 120.00210 * 2 1 3 5 5 Si 1.86301 * 109.47129 * 239.99932 * 2 1 3 6 6 C 1.86304 * 109.47173 * 60.00411 * 5 2 1 7 7 C 1.86298 * 109.46918 * 180.02562 * 5 2 1 8 8 O 1.63094 * 109.47295 * 300.00211 * 5 2 1 9 9 C 1.42898 * 114.00474 * 180.02562 * 8 5 2 10 10 H 1.08999 * 109.49611 * 30.06146 * 9 8 5 11 11 C 1.53032 * 109.50398 * 150.16114 * 9 8 5 12 12 C 1.53039 * 109.54376 * 181.31651 * 11 9 8 13 13 C 1.53195 * 109.31226 * 298.63975 * 12 11 9 14 14 N 1.46920 * 108.77865 * 54.62898 * 13 12 11 15 15 C 1.34774 * 120.63125 * 126.37256 * 14 13 12 16 16 O 1.21694 * 120.00013 * 174.66975 * 15 14 13 17 17 C 1.46373 * 119.99860 * 354.66507 * 15 14 13 18 18 H 1.07993 * 120.00213 * 335.19511 * 17 15 14 19 19 C 1.40050 * 119.99907 * 155.19497 * 17 15 14 20 20 N 1.30668 * 120.00051 * 184.37138 * 19 17 15 21 21 Si 1.86807 * 120.00100 * 4.37486 * 19 17 15 22 22 H 1.48504 * 109.46941 * 84.43969 * 21 19 17 23 23 H 1.48491 * 109.47349 * 204.44097 * 21 19 17 24 24 H 1.48497 * 109.47182 * 324.44398 * 21 19 17 25 25 C 1.46931 * 118.73964 * 306.39356 * 14 13 12 26 26 H 1.09006 * 109.47062 * 59.99886 * 1 2 3 27 27 H 1.08999 * 109.47359 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47357 * 300.00426 * 1 2 3 29 29 H 1.09009 * 109.47059 * 59.99756 * 3 2 1 30 30 H 1.08999 * 109.47182 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47255 * 300.00374 * 3 2 1 32 32 H 1.08999 * 109.47318 * 59.99671 * 4 2 1 33 33 H 1.08999 * 109.47402 * 180.02562 * 4 2 1 34 34 H 1.09004 * 109.47217 * 300.00168 * 4 2 1 35 35 H 1.08999 * 109.46875 * 59.99732 * 6 5 2 36 36 H 1.08997 * 109.47010 * 180.02562 * 6 5 2 37 37 H 1.08999 * 109.46735 * 300.00093 * 6 5 2 38 38 H 1.08998 * 109.47450 * 60.00451 * 7 5 2 39 39 H 1.09009 * 109.47005 * 179.97438 * 7 5 2 40 40 H 1.08999 * 109.47353 * 299.99841 * 7 5 2 41 41 H 1.09000 * 109.46342 * 301.34162 * 11 9 8 42 42 H 1.09006 * 109.45766 * 61.29245 * 11 9 8 43 43 H 1.08994 * 109.50030 * 178.68390 * 12 11 9 44 44 H 1.09000 * 109.51827 * 58.59985 * 12 11 9 45 45 H 1.09002 * 109.58104 * 294.84212 * 13 12 11 46 46 H 1.08994 * 109.58574 * 174.42061 * 13 12 11 47 47 H 0.97004 * 120.00333 * 179.97438 * 20 19 17 48 48 H 1.09002 * 109.58541 * 293.82021 * 25 14 13 49 49 H 1.09004 * 109.70599 * 173.46184 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 14 2.1510 -0.8782 -1.5211 6 6 1.5301 0.0000 -3.0423 7 6 4.0140 -0.8789 -1.5207 8 8 1.6073 -2.4159 -1.5212 9 6 2.0294 -3.1817 -2.6514 10 1 2.9985 -2.8196 -2.9948 11 6 2.1450 -4.6554 -2.2557 12 6 2.6285 -5.4716 -3.4566 13 6 1.6076 -5.3547 -4.5928 14 7 1.3822 -3.9319 -4.8815 15 6 1.5222 -3.4547 -6.1341 16 8 1.2392 -2.2969 -6.3794 17 6 2.0147 -4.3293 -7.1995 18 1 2.6278 -5.1843 -6.9561 19 6 1.6908 -4.0572 -8.5346 20 7 2.0580 -4.8839 -9.4776 21 14 0.7341 -2.5122 -8.9675 22 1 1.6729 -1.3691 -9.0986 23 1 0.0199 -2.7162 -10.2533 24 1 -0.2510 -2.2231 -7.8945 25 6 1.0016 -3.0388 -3.7785 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6765 -1.7489 1.2492 33 1 3.1299 -0.7209 1.2495 34 1 1.6765 -0.2075 2.1392 35 1 1.8934 1.0277 -3.0422 36 1 1.8930 -0.5141 -3.9322 37 1 0.4401 0.0001 -3.0423 38 1 4.3769 -1.3930 -0.6308 39 1 4.3773 -1.3932 -2.4105 40 1 4.3777 0.1486 -1.5205 41 1 2.8575 -4.7569 -1.4371 42 1 1.1700 -5.0230 -1.9356 43 1 2.7330 -6.5173 -3.1675 44 1 3.5923 -5.0890 -3.7927 45 1 0.6692 -5.8192 -4.2900 46 1 1.9932 -5.8515 -5.4830 47 1 1.8333 -4.6957 -10.4023 48 1 0.0138 -3.3146 -3.4093 49 1 0.9856 -2.0071 -4.1297 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585088196.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:21 Heat of formation + Delta-G solvation = -159.938651 kcal Electronic energy + Delta-G solvation = -25764.938250 eV Core-core repulsion = 22347.436648 eV Total energy + Delta-G solvation = -3417.501601 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.186 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.76737 -38.75131 -36.81849 -36.59669 -34.98839 -33.06283 -31.27986 -29.33629 -29.09240 -28.60583 -27.81456 -27.39189 -25.86582 -23.80209 -22.23134 -20.61575 -20.34911 -18.81939 -18.03487 -17.65232 -16.89679 -16.43566 -15.92779 -15.77447 -15.48751 -15.12642 -14.83398 -14.70328 -14.55634 -14.23363 -14.07455 -13.98623 -13.91245 -13.82935 -13.53840 -13.37486 -13.15688 -13.09324 -12.91668 -12.85396 -12.82127 -12.60115 -12.35557 -12.15315 -11.96627 -11.85600 -11.66685 -11.60518 -11.47291 -11.44814 -11.15503 -11.01424 -10.44958 -10.05388 -9.99000 -9.25505 -8.77490 -6.97192 1.29942 1.34030 1.41394 1.60723 1.80201 2.03559 2.08769 2.32546 2.50370 2.69400 3.24539 3.80753 3.92731 4.08719 4.15063 4.16840 4.19691 4.25218 4.52523 4.55237 4.60138 4.67181 4.69543 4.74624 4.76058 4.83340 4.87242 4.90423 4.92567 5.03010 5.04988 5.06562 5.13653 5.14603 5.19831 5.21228 5.27370 5.31040 5.36801 5.44656 5.50992 5.57538 5.58865 5.62482 5.71894 6.02080 6.23451 6.63792 7.11980 7.94863 8.28414 Molecular weight = 313.19amu Principal moments of inertia in cm(-1) A = 0.019028 B = 0.004168 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.127389 B = 6716.150345 C = 7563.003695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.359 4.359 3 C -0.141 4.141 4 C -0.135 4.135 5 Si 1.291 2.709 6 C -0.528 4.528 7 C -0.510 4.510 8 O -0.619 6.619 9 C 0.109 3.891 10 H 0.053 0.947 11 C -0.110 4.110 12 C -0.128 4.128 13 C 0.107 3.893 14 N -0.626 5.626 15 C 0.551 3.449 16 O -0.641 6.641 17 C -0.548 4.548 18 H 0.087 0.913 19 C 0.072 3.928 20 N -0.854 5.854 21 Si 0.993 3.007 22 H -0.289 1.289 23 H -0.298 1.298 24 H -0.277 1.277 25 C 0.077 3.923 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.044 0.956 37 H 0.063 0.937 38 H 0.084 0.916 39 H 0.054 0.946 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.081 0.919 43 H 0.108 0.892 44 H 0.056 0.944 45 H 0.070 0.930 46 H 0.082 0.918 47 H 0.290 0.710 48 H 0.068 0.932 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.920 4.492 21.906 22.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.405 4.405 3 C -0.198 4.198 4 C -0.192 4.192 5 Si 1.421 2.579 6 C -0.626 4.626 7 C -0.612 4.612 8 O -0.577 6.577 9 C 0.051 3.949 10 H 0.071 0.929 11 C -0.147 4.147 12 C -0.166 4.166 13 C -0.015 4.015 14 N -0.360 5.360 15 C 0.358 3.642 16 O -0.534 6.534 17 C -0.584 4.584 18 H 0.105 0.895 19 C -0.143 4.143 20 N -0.485 5.485 21 Si 0.825 3.175 22 H -0.216 1.216 23 H -0.228 1.228 24 H -0.204 1.204 25 C -0.047 4.047 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.064 0.936 37 H 0.082 0.918 38 H 0.103 0.897 39 H 0.073 0.927 40 H 0.101 0.899 41 H 0.109 0.891 42 H 0.100 0.900 43 H 0.126 0.874 44 H 0.075 0.925 45 H 0.088 0.912 46 H 0.100 0.900 47 H 0.101 0.899 48 H 0.086 0.914 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.650 4.766 21.747 22.273 hybrid contribution -0.146 1.089 -1.174 1.608 sum 0.504 5.855 20.574 21.396 Atomic orbital electron populations 1.21551 0.94073 1.01958 1.01921 1.25494 1.00432 1.02895 1.11639 1.21610 1.01451 0.94352 1.02370 1.21536 1.01200 1.00121 0.96320 0.76784 0.63466 0.53333 0.64291 1.27533 1.06522 1.09941 1.18642 1.26997 1.24717 1.05143 1.04369 1.85341 1.79589 1.46393 1.46361 1.21847 0.95163 0.94144 0.83740 0.92874 1.21643 1.03594 0.91259 0.98236 1.21942 0.98207 1.02106 0.94341 1.21812 0.99361 0.80776 0.99563 1.47701 1.72035 1.09540 1.06713 1.18394 0.76565 0.86472 0.82802 1.90280 1.60391 1.21433 1.81250 1.20893 1.34015 1.13485 0.90044 0.89494 1.26113 0.94006 0.98500 0.95700 1.69532 1.40532 1.36146 1.02323 0.84955 0.79499 0.78731 0.74339 1.21570 1.22786 1.20362 1.22210 0.98534 0.96395 0.87550 0.93106 0.92521 0.91895 0.91741 0.91605 0.92675 0.92349 0.91846 0.92103 0.90382 0.93647 0.91775 0.89678 0.92714 0.89874 0.89069 0.90032 0.87370 0.92492 0.91191 0.89996 0.89936 0.91355 0.90411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 7.85 71.98 0.56 -1.99 16 2 C -0.36 -6.40 0.53 -10.80 -0.01 -6.41 16 3 C -0.14 -2.21 7.85 71.98 0.56 -1.65 16 4 C -0.13 -2.10 7.85 71.98 0.56 -1.54 16 5 Si 1.29 28.98 8.07 68.60 0.55 29.53 16 6 C -0.53 -15.51 7.53 113.37 0.85 -14.66 16 7 C -0.51 -10.94 8.56 113.37 0.97 -9.97 16 8 O -0.62 -15.87 8.28 -148.98 -1.23 -17.10 16 9 C 0.11 3.22 2.30 30.67 0.07 3.29 16 10 H 0.05 1.64 6.15 -2.39 -0.01 1.62 16 11 C -0.11 -2.64 5.53 30.62 0.17 -2.47 16 12 C -0.13 -3.31 6.08 30.67 0.19 -3.12 16 13 C 0.11 3.69 6.35 86.36 0.55 4.24 16 14 N -0.63 -26.91 2.97 -823.97 -2.45 -29.36 16 15 C 0.55 29.64 7.22 86.36 0.62 30.26 16 16 O -0.64 -37.71 11.71 -4.33 -0.05 -37.77 16 17 C -0.55 -30.93 9.06 24.83 0.22 -30.70 16 18 H 0.09 4.88 6.47 -2.91 -0.02 4.86 16 19 C 0.07 4.10 5.52 85.31 0.47 4.57 16 20 N -0.85 -48.35 13.92 21.84 0.30 -48.04 16 21 Si 0.99 52.42 26.20 68.60 1.80 54.22 16 22 H -0.29 -15.59 7.11 99.48 0.71 -14.88 16 23 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 24 H -0.28 -15.69 6.21 99.48 0.62 -15.07 16 25 C 0.08 2.86 5.74 86.36 0.50 3.36 16 26 H 0.05 0.97 7.79 -2.38 -0.02 0.96 16 27 H 0.06 1.09 7.96 -2.39 -0.02 1.07 16 28 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 30 H 0.06 0.90 7.79 -2.39 -0.02 0.88 16 31 H 0.05 0.88 7.79 -2.39 -0.02 0.86 16 32 H 0.06 0.94 7.97 -2.39 -0.02 0.92 16 33 H 0.06 0.87 7.79 -2.39 -0.02 0.85 16 34 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 35 H 0.08 2.01 7.79 -2.39 -0.02 1.99 16 36 H 0.04 1.65 6.33 -2.39 -0.02 1.64 16 37 H 0.06 1.90 7.79 -2.39 -0.02 1.88 16 38 H 0.08 1.56 7.79 -2.39 -0.02 1.54 16 39 H 0.05 1.35 7.10 -2.38 -0.02 1.33 16 40 H 0.08 1.57 7.79 -2.39 -0.02 1.55 16 41 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 43 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 46 H 0.08 3.16 5.52 -2.39 -0.01 3.15 16 47 H 0.29 15.09 8.29 -92.70 -0.77 14.32 16 48 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 49 H 0.08 3.26 3.82 -2.38 -0.01 3.25 16 Total: -1.00 -67.98 374.78 6.04 -61.95 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: 0.81 Total: 13.38 kcal Atomic # 6 Polarization: -33.11 SS G_CDS: 6.30 Total: -26.81 kcal Atomic # 7 Polarization: -75.26 SS G_CDS: -2.15 Total: -77.40 kcal Atomic # 8 Polarization: -53.58 SS G_CDS: -1.28 Total: -54.87 kcal Atomic # 14 Polarization: 81.40 SS G_CDS: 2.35 Total: 83.75 kcal Total: -67.98 6.04 -61.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585088196.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.992 kcal (2) G-P(sol) polarization free energy of solvation -67.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds