Wall clock time and date at job start Fri Apr 10 2020 18:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.49202 * 2 1 4 4 C 1.53239 * 109.49668 * 239.91375 * 2 1 3 5 5 N 1.47084 * 108.51984 * 293.87098 * 4 2 1 6 6 C 1.34779 * 120.87958 * 128.79353 * 5 4 2 7 7 O 1.21586 * 119.99797 * 5.00682 * 6 5 4 8 8 N 1.34777 * 120.00095 * 185.01187 * 6 5 4 9 9 C 1.46496 * 119.99941 * 174.56491 * 8 6 5 10 10 C 1.53000 * 109.46975 * 180.02562 * 9 8 6 11 11 C 1.53001 * 109.47411 * 180.02562 * 10 9 8 12 12 C 1.50700 * 109.47422 * 179.97438 * 11 10 9 13 13 H 1.07993 * 119.99616 * 0.02562 * 12 11 10 14 14 C 1.37873 * 119.99908 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00447 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00055 * 180.02562 * 14 12 11 17 17 H 1.48508 * 109.46970 * 59.99706 * 16 14 12 18 18 H 1.48492 * 109.47419 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.46966 * 300.00195 * 16 14 12 20 20 C 1.47073 * 118.23897 * 308.81600 * 5 4 2 21 21 C 1.53237 * 108.52415 * 51.18469 * 20 5 4 22 22 N 1.46897 * 109.33969 * 306.17248 * 21 20 5 23 23 C 1.46907 * 111.00201 * 187.25054 * 22 21 20 24 24 C 1.53001 * 109.46648 * 70.73731 * 23 22 21 25 25 O 1.42899 * 109.47521 * 65.00420 * 24 23 22 26 26 H 1.08995 * 109.47612 * 299.95106 * 1 2 3 27 27 H 1.09000 * 109.47222 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47043 * 59.95181 * 1 2 3 29 29 H 1.08996 * 109.47586 * 53.18325 * 3 2 1 30 30 H 1.09000 * 109.47211 * 173.18998 * 3 2 1 31 31 H 1.09002 * 109.46569 * 293.18678 * 3 2 1 32 32 H 1.08996 * 109.62731 * 53.58047 * 4 2 1 33 33 H 1.09000 * 109.62753 * 174.16400 * 4 2 1 34 34 H 0.96997 * 119.99908 * 354.56274 * 8 6 5 35 35 H 1.09001 * 109.47213 * 299.99572 * 9 8 6 36 36 H 1.08995 * 109.47238 * 60.00041 * 9 8 6 37 37 H 1.09001 * 109.46762 * 299.99802 * 10 9 8 38 38 H 1.09000 * 109.47706 * 59.99501 * 10 9 8 39 39 H 1.09002 * 109.46635 * 300.00079 * 11 10 9 40 40 H 1.09000 * 109.46833 * 59.99429 * 11 10 9 41 41 H 0.96993 * 120.00586 * 179.97438 * 15 14 12 42 42 H 1.09006 * 109.62943 * 291.47525 * 20 5 4 43 43 H 1.08997 * 109.62820 * 170.89401 * 20 5 4 44 44 H 1.08998 * 109.49870 * 186.20760 * 21 20 5 45 45 H 1.09000 * 109.51558 * 66.14066 * 21 20 5 46 46 H 1.08995 * 109.47073 * 190.73596 * 23 22 21 47 47 H 1.08994 * 109.47201 * 310.73764 * 23 22 21 48 48 H 1.09008 * 109.46615 * 185.00176 * 24 23 22 49 49 H 1.08994 * 109.47654 * 304.99747 * 24 23 22 50 50 H 0.96701 * 114.00288 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0405 1.4423 0.0000 4 6 2.0414 -0.7241 -1.2499 5 7 1.6653 -2.1429 -1.1546 6 6 1.0284 -2.7594 -2.1699 7 8 0.8383 -2.1693 -3.2159 8 7 0.6023 -4.0298 -2.0258 9 6 -0.1932 -4.6599 -3.0823 10 6 -0.5451 -6.0910 -2.6710 11 6 -1.3754 -6.7493 -3.7747 12 6 -1.7215 -8.1591 -3.3698 13 1 -1.3834 -8.5465 -2.4202 14 6 -2.4706 -8.9538 -4.2114 15 7 -2.8827 -8.4818 -5.3677 16 14 -2.9002 -10.7010 -3.7094 17 1 -3.6841 -10.6751 -2.4483 18 1 -3.7070 -11.3396 -4.7800 19 1 -1.6516 -11.4771 -3.5001 20 6 2.0022 -2.8708 0.0781 21 6 1.4924 -2.0622 1.2758 22 7 2.0201 -0.6935 1.1987 23 6 1.6966 0.0647 2.4147 24 6 2.5255 -0.4697 3.5845 25 8 3.9110 -0.2193 3.3403 26 1 -0.3634 0.5130 0.8904 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5146 -0.8896 29 1 1.5813 1.9904 0.8226 30 1 3.1237 1.4443 0.1219 31 1 1.7803 1.9197 -0.9447 32 1 1.5891 -0.2843 -2.1387 33 1 3.1264 -0.6360 -1.3059 34 1 0.8223 -4.5270 -1.2225 35 1 -1.1100 -4.0905 -3.2354 36 1 0.3819 -4.6785 -4.0080 37 1 0.3714 -6.6606 -2.5176 38 1 -1.1204 -6.0720 -1.7453 39 1 -2.2919 -6.1797 -3.9286 40 1 -0.7998 -6.7683 -4.7001 41 1 -3.4094 -9.0409 -5.9600 42 1 3.0835 -2.9890 0.1498 43 1 1.5240 -3.8502 0.0673 44 1 1.8291 -2.5304 2.2007 45 1 0.4029 -2.0334 1.2584 46 1 1.9268 1.1185 2.2578 47 1 0.6360 -0.0458 2.6405 48 1 2.2221 0.0317 4.5036 49 1 2.3624 -1.5426 3.6851 50 1 4.4971 -0.5327 4.0426 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588337781.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:23 Heat of formation + Delta-G solvation = -68.627753 kcal Electronic energy + Delta-G solvation = -27200.837729 eV Core-core repulsion = 23456.381969 eV Total energy + Delta-G solvation = -3744.455760 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.85538 -39.10030 -37.03628 -35.43037 -34.91686 -33.56355 -33.10384 -31.11912 -30.11262 -27.68613 -27.59697 -27.10921 -25.70915 -23.35893 -22.84340 -22.05560 -20.61413 -19.88040 -18.69689 -18.06484 -17.76267 -16.67835 -16.36097 -15.84861 -15.76513 -15.55221 -14.79303 -14.63912 -14.55088 -14.50602 -14.24988 -13.82734 -13.60598 -13.53327 -13.29132 -12.84557 -12.38626 -12.29809 -12.18789 -12.08528 -11.90758 -11.75290 -11.65954 -11.55352 -11.37719 -11.02345 -10.93489 -10.87944 -10.67784 -10.61332 -10.27882 -9.98894 -9.84519 -9.42360 -9.12737 -8.96026 -8.64094 -8.36251 -8.31341 -6.00856 -4.04089 2.69625 3.32124 3.33211 3.36966 3.38747 3.49011 3.91488 3.99853 4.43107 4.45393 4.55746 4.59740 4.74573 4.83007 4.89883 4.94097 5.02073 5.04140 5.18233 5.30441 5.34662 5.35321 5.39055 5.45541 5.55080 5.57369 5.65843 5.70642 5.74313 5.78433 5.83695 5.87732 6.04812 6.20322 6.38744 6.56719 6.64010 6.69113 6.79247 6.85752 7.04064 7.09212 7.33239 7.64583 7.77918 7.97981 8.10899 8.38877 8.77156 9.02399 9.59876 11.10406 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.022942 B = 0.002368 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.183432 B =11822.090432 C =12555.224780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.092 3.908 3 C -0.140 4.140 4 C 0.149 3.851 5 N -0.633 5.633 6 C 0.705 3.295 7 O -0.591 6.591 8 N -0.743 5.743 9 C 0.135 3.865 10 C -0.120 4.120 11 C 0.025 3.975 12 C -0.523 4.523 13 H 0.054 0.946 14 C 0.057 3.943 15 N -0.894 5.894 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.118 3.882 21 C 0.033 3.967 22 N -0.513 5.513 23 C 0.046 3.954 24 C 0.082 3.918 25 O -0.558 6.558 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.392 0.608 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.053 0.947 38 H 0.052 0.948 39 H 0.019 0.981 40 H 0.019 0.981 41 H 0.262 0.738 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.045 0.955 46 H 0.090 0.910 47 H 0.048 0.952 48 H 0.045 0.955 49 H 0.044 0.956 50 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.926 19.283 19.928 30.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.002 3.998 3 C -0.198 4.198 4 C 0.025 3.975 5 N -0.371 5.371 6 C 0.406 3.594 7 O -0.469 6.469 8 N -0.399 5.399 9 C 0.011 3.989 10 C -0.158 4.158 11 C -0.013 4.013 12 C -0.561 4.561 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.533 5.533 16 Si 0.721 3.279 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.006 4.006 21 C -0.095 4.095 22 N -0.238 5.238 23 C -0.082 4.082 24 C 0.003 3.997 25 O -0.362 6.362 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.113 0.887 33 H 0.088 0.912 34 H 0.228 0.772 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.037 0.963 40 H 0.038 0.962 41 H 0.071 0.929 42 H 0.094 0.906 43 H 0.099 0.901 44 H 0.103 0.897 45 H 0.063 0.937 46 H 0.108 0.892 47 H 0.066 0.934 48 H 0.063 0.937 49 H 0.063 0.937 50 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 11.907 19.877 18.364 29.566 hybrid contribution -0.959 -1.560 1.350 2.275 sum 10.948 18.317 19.715 29.053 Atomic orbital electron populations 1.22423 0.96373 1.02602 1.02165 1.21478 0.93071 0.94469 0.90773 1.21884 1.02314 0.93549 1.02015 1.21522 0.99875 0.79156 0.96958 1.47271 1.62284 1.11445 1.16137 1.15901 0.78288 0.81882 0.83291 1.90902 1.63059 1.66090 1.26863 1.45548 1.58063 1.12631 1.23679 1.21503 0.93982 0.94077 0.89296 1.21884 1.00527 0.92051 1.01314 1.19019 0.94570 0.94913 0.92806 1.21162 1.33309 0.97914 1.03717 0.92729 1.25029 0.95952 0.98480 0.94997 1.69953 1.36896 1.36793 1.09621 0.86643 0.78448 0.84699 0.78100 1.20282 1.21272 1.20241 1.21661 1.01086 0.94583 0.83248 1.22589 0.98168 0.89949 0.98838 1.62128 1.58862 1.01468 1.01328 1.22268 0.96507 0.99717 0.89678 1.22186 0.82463 0.98825 0.96196 1.86604 1.16444 1.84212 1.48966 0.92836 0.91972 0.91680 0.92268 0.91136 0.91708 0.88652 0.91174 0.77242 0.92138 0.91873 0.92787 0.92895 0.96290 0.96221 0.92864 0.90571 0.90073 0.89711 0.93697 0.89192 0.93365 0.93688 0.93737 0.78117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.71 7.69 37.16 0.29 -1.43 16 2 C 0.09 0.85 0.69 -131.48 -0.09 0.76 16 3 C -0.14 -1.07 7.81 37.16 0.29 -0.78 16 4 C 0.15 1.69 5.26 -3.60 -0.02 1.67 16 5 N -0.63 -7.87 2.48 -178.19 -0.44 -8.31 16 6 C 0.70 11.45 8.31 -86.92 -0.72 10.73 16 7 O -0.59 -11.98 15.83 5.29 0.08 -11.90 16 8 N -0.74 -11.39 5.47 -65.23 -0.36 -11.75 16 9 C 0.13 2.47 5.68 -4.04 -0.02 2.44 16 10 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 11 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 12 C -0.52 -14.65 9.11 -34.44 -0.31 -14.97 16 13 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.89 -26.95 13.29 55.43 0.74 -26.22 16 16 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 C 0.12 1.11 6.59 -3.61 -0.02 1.09 16 21 C 0.03 0.27 5.10 -3.70 -0.02 0.25 16 22 N -0.51 -4.38 4.33 -218.68 -0.95 -5.33 16 23 C 0.05 0.33 4.49 -3.82 -0.02 0.31 16 24 C 0.08 0.49 7.18 37.16 0.27 0.76 16 25 O -0.56 -4.10 13.61 -35.23 -0.48 -4.58 16 26 H 0.05 0.45 6.95 -51.93 -0.36 0.09 16 27 H 0.06 0.71 5.93 -51.93 -0.31 0.40 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.40 6.42 -51.93 -0.33 0.07 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.10 1.24 7.09 -51.93 -0.37 0.87 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.39 4.92 5.97 -40.82 -0.24 4.68 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.08 0.68 5.64 -51.93 -0.29 0.39 16 44 H 0.08 0.57 6.33 -51.93 -0.33 0.24 16 45 H 0.04 0.40 6.10 -51.93 -0.32 0.09 16 46 H 0.09 0.66 5.54 -51.93 -0.29 0.37 16 47 H 0.05 0.32 7.21 -51.93 -0.37 -0.06 16 48 H 0.04 0.20 8.14 -51.92 -0.42 -0.22 16 49 H 0.04 0.24 6.42 -51.93 -0.33 -0.09 16 50 H 0.37 1.18 9.12 45.56 0.42 1.59 16 LS Contribution 381.93 15.07 5.76 5.76 Total: -1.00 -34.40 381.93 -9.18 -43.58 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -7.75 Total: 1.89 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -0.76 Total: 0.34 kcal Atomic # 7 Polarization: -50.60 SS G_CDS: -1.01 Total: -51.61 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.40 Total: -16.48 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.40 -9.18 -43.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588337781.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.047 kcal (2) G-P(sol) polarization free energy of solvation -34.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds