Wall clock time and date at job start Fri Apr 10 2020 18:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.49202 * 2 1 4 4 C 1.53239 * 109.49668 * 239.91375 * 2 1 3 5 5 N 1.47084 * 108.51984 * 293.87098 * 4 2 1 6 6 C 1.34779 * 120.87958 * 128.79353 * 5 4 2 7 7 O 1.21586 * 119.99797 * 5.00682 * 6 5 4 8 8 N 1.34777 * 120.00095 * 185.01187 * 6 5 4 9 9 C 1.46496 * 119.99941 * 174.56491 * 8 6 5 10 10 C 1.53000 * 109.46975 * 180.02562 * 9 8 6 11 11 C 1.53001 * 109.47411 * 180.02562 * 10 9 8 12 12 C 1.50700 * 109.47422 * 179.97438 * 11 10 9 13 13 H 1.07993 * 119.99616 * 0.02562 * 12 11 10 14 14 C 1.37873 * 119.99908 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00447 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00055 * 180.02562 * 14 12 11 17 17 H 1.48508 * 109.46970 * 59.99706 * 16 14 12 18 18 H 1.48492 * 109.47419 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.46966 * 300.00195 * 16 14 12 20 20 C 1.47073 * 118.23897 * 308.81600 * 5 4 2 21 21 C 1.53237 * 108.52415 * 51.18469 * 20 5 4 22 22 N 1.46897 * 109.33969 * 306.17248 * 21 20 5 23 23 C 1.46907 * 111.00201 * 187.25054 * 22 21 20 24 24 C 1.53001 * 109.46648 * 70.73731 * 23 22 21 25 25 O 1.42899 * 109.47521 * 65.00420 * 24 23 22 26 26 H 1.08995 * 109.47612 * 299.95106 * 1 2 3 27 27 H 1.09000 * 109.47222 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47043 * 59.95181 * 1 2 3 29 29 H 1.08996 * 109.47586 * 53.18325 * 3 2 1 30 30 H 1.09000 * 109.47211 * 173.18998 * 3 2 1 31 31 H 1.09002 * 109.46569 * 293.18678 * 3 2 1 32 32 H 1.08996 * 109.62731 * 53.58047 * 4 2 1 33 33 H 1.09000 * 109.62753 * 174.16400 * 4 2 1 34 34 H 0.96997 * 119.99908 * 354.56274 * 8 6 5 35 35 H 1.09001 * 109.47213 * 299.99572 * 9 8 6 36 36 H 1.08995 * 109.47238 * 60.00041 * 9 8 6 37 37 H 1.09001 * 109.46762 * 299.99802 * 10 9 8 38 38 H 1.09000 * 109.47706 * 59.99501 * 10 9 8 39 39 H 1.09002 * 109.46635 * 300.00079 * 11 10 9 40 40 H 1.09000 * 109.46833 * 59.99429 * 11 10 9 41 41 H 0.96993 * 120.00586 * 179.97438 * 15 14 12 42 42 H 1.09006 * 109.62943 * 291.47525 * 20 5 4 43 43 H 1.08997 * 109.62820 * 170.89401 * 20 5 4 44 44 H 1.08998 * 109.49870 * 186.20760 * 21 20 5 45 45 H 1.09000 * 109.51558 * 66.14066 * 21 20 5 46 46 H 1.08995 * 109.47073 * 190.73596 * 23 22 21 47 47 H 1.08994 * 109.47201 * 310.73764 * 23 22 21 48 48 H 1.09008 * 109.46615 * 185.00176 * 24 23 22 49 49 H 1.08994 * 109.47654 * 304.99747 * 24 23 22 50 50 H 0.96701 * 114.00288 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0405 1.4423 0.0000 4 6 2.0414 -0.7241 -1.2499 5 7 1.6653 -2.1429 -1.1546 6 6 1.0284 -2.7594 -2.1699 7 8 0.8383 -2.1693 -3.2159 8 7 0.6023 -4.0298 -2.0258 9 6 -0.1932 -4.6599 -3.0823 10 6 -0.5451 -6.0910 -2.6710 11 6 -1.3754 -6.7493 -3.7747 12 6 -1.7215 -8.1591 -3.3698 13 1 -1.3834 -8.5465 -2.4202 14 6 -2.4706 -8.9538 -4.2114 15 7 -2.8827 -8.4818 -5.3677 16 14 -2.9002 -10.7010 -3.7094 17 1 -3.6841 -10.6751 -2.4483 18 1 -3.7070 -11.3396 -4.7800 19 1 -1.6516 -11.4771 -3.5001 20 6 2.0022 -2.8708 0.0781 21 6 1.4924 -2.0622 1.2758 22 7 2.0201 -0.6935 1.1987 23 6 1.6966 0.0647 2.4147 24 6 2.5255 -0.4697 3.5845 25 8 3.9110 -0.2193 3.3403 26 1 -0.3634 0.5130 0.8904 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5146 -0.8896 29 1 1.5813 1.9904 0.8226 30 1 3.1237 1.4443 0.1219 31 1 1.7803 1.9197 -0.9447 32 1 1.5891 -0.2843 -2.1387 33 1 3.1264 -0.6360 -1.3059 34 1 0.8223 -4.5270 -1.2225 35 1 -1.1100 -4.0905 -3.2354 36 1 0.3819 -4.6785 -4.0080 37 1 0.3714 -6.6606 -2.5176 38 1 -1.1204 -6.0720 -1.7453 39 1 -2.2919 -6.1797 -3.9286 40 1 -0.7998 -6.7683 -4.7001 41 1 -3.4094 -9.0409 -5.9600 42 1 3.0835 -2.9890 0.1498 43 1 1.5240 -3.8502 0.0673 44 1 1.8291 -2.5304 2.2007 45 1 0.4029 -2.0334 1.2584 46 1 1.9268 1.1185 2.2578 47 1 0.6360 -0.0458 2.6405 48 1 2.2221 0.0317 4.5036 49 1 2.3624 -1.5426 3.6851 50 1 4.4971 -0.5327 4.0426 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588337781.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:23 Heat of formation + Delta-G solvation = -95.002850 kcal Electronic energy + Delta-G solvation = -27201.981439 eV Core-core repulsion = 23456.381969 eV Total energy + Delta-G solvation = -3745.599470 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.82018 -40.13568 -37.60819 -36.98310 -35.93837 -35.15984 -34.13544 -32.89006 -30.83170 -28.91935 -28.32497 -28.17990 -26.94328 -24.80831 -23.96906 -22.67920 -22.31300 -21.08699 -19.51066 -19.19246 -18.47836 -18.23373 -17.58440 -16.94281 -16.82542 -16.48155 -16.32654 -15.90070 -15.60669 -15.42295 -15.29509 -14.84239 -14.73474 -14.26396 -14.16174 -13.98753 -13.75857 -13.64138 -13.43629 -13.04984 -12.94757 -12.88222 -12.70909 -12.54178 -12.47958 -12.38442 -12.27405 -12.11069 -11.85639 -11.67589 -11.57719 -11.51685 -11.27763 -11.09227 -10.71024 -10.54401 -10.26559 -9.62013 -9.12708 -8.18749 -6.30552 1.41829 1.45179 1.52735 1.56708 2.07691 2.42253 2.80711 2.89827 3.14804 3.52209 3.65924 3.83244 3.94411 4.00999 4.13965 4.21259 4.21577 4.24857 4.40734 4.43144 4.47529 4.52517 4.55152 4.60937 4.72366 4.74915 4.78563 4.82609 4.84339 4.92975 4.95445 4.97960 5.02368 5.06661 5.15708 5.19960 5.32638 5.45057 5.46396 5.53759 5.70724 5.83818 5.85565 6.11454 6.15998 6.22639 6.86110 6.93542 7.07020 7.38947 7.50837 8.93256 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.022942 B = 0.002368 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.183432 B =11822.090432 C =12555.224780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.099 3.901 3 C -0.134 4.134 4 C 0.146 3.854 5 N -0.625 5.625 6 C 0.701 3.299 7 O -0.638 6.638 8 N -0.731 5.731 9 C 0.150 3.850 10 C -0.099 4.099 11 C 0.024 3.976 12 C -0.541 4.541 13 H 0.067 0.933 14 C -0.004 4.004 15 N -0.936 5.936 16 Si 0.968 3.032 17 H -0.265 1.265 18 H -0.287 1.287 19 H -0.265 1.265 20 C 0.113 3.887 21 C 0.037 3.963 22 N -0.518 5.518 23 C 0.043 3.957 24 C 0.083 3.917 25 O -0.582 6.582 26 H 0.069 0.931 27 H 0.044 0.956 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.408 0.592 35 H 0.045 0.955 36 H 0.045 0.955 37 H 0.067 0.933 38 H 0.068 0.932 39 H -0.008 1.008 40 H -0.009 1.009 41 H 0.263 0.737 42 H 0.085 0.915 43 H 0.093 0.907 44 H 0.107 0.893 45 H 0.039 0.961 46 H 0.088 0.912 47 H 0.055 0.945 48 H 0.062 0.938 49 H 0.051 0.949 50 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.715 18.712 23.144 32.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.008 3.992 3 C -0.192 4.192 4 C 0.022 3.978 5 N -0.361 5.361 6 C 0.402 3.598 7 O -0.520 6.520 8 N -0.389 5.389 9 C 0.025 3.975 10 C -0.137 4.137 11 C -0.013 4.013 12 C -0.579 4.579 13 H 0.086 0.914 14 C -0.202 4.202 15 N -0.576 5.576 16 Si 0.792 3.208 17 H -0.190 1.190 18 H -0.212 1.212 19 H -0.190 1.190 20 C -0.010 4.010 21 C -0.092 4.092 22 N -0.243 5.243 23 C -0.084 4.084 24 C 0.005 3.995 25 O -0.389 6.389 26 H 0.088 0.912 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.247 0.753 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.010 0.990 40 H 0.010 0.990 41 H 0.072 0.928 42 H 0.103 0.897 43 H 0.111 0.889 44 H 0.125 0.875 45 H 0.057 0.943 46 H 0.106 0.894 47 H 0.073 0.927 48 H 0.080 0.920 49 H 0.069 0.931 50 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 12.740 19.309 21.672 31.699 hybrid contribution -1.157 -1.319 0.371 1.793 sum 11.583 17.990 22.043 30.719 Atomic orbital electron populations 1.22364 0.96778 1.01466 1.02358 1.21375 0.92575 0.95056 0.90198 1.21839 1.02087 0.92602 1.02666 1.21604 0.99932 0.78697 0.97538 1.47304 1.60836 1.11890 1.16110 1.16053 0.78451 0.81815 0.83466 1.90870 1.64928 1.67107 1.29055 1.45200 1.57590 1.12586 1.23533 1.21077 0.93512 0.93343 0.89521 1.21580 1.00233 0.92277 0.99596 1.18930 0.93938 0.94750 0.93707 1.21643 1.33161 0.98874 1.04216 0.91432 1.26041 0.95833 1.03416 0.94884 1.70109 1.37806 1.38677 1.10992 0.85456 0.78565 0.78782 0.77970 1.18951 1.21232 1.18987 1.21926 1.01821 0.95044 0.82169 1.22589 0.97770 0.89832 0.98980 1.62147 1.58848 1.01709 1.01563 1.22359 0.97261 0.99487 0.89338 1.22216 0.81826 0.99355 0.96151 1.86551 1.17334 1.84623 1.50381 0.91232 0.93707 0.92862 0.90968 0.91439 0.91588 0.90810 0.90799 0.75306 0.93615 0.93664 0.91389 0.91301 0.98982 0.99038 0.92817 0.89710 0.88912 0.87518 0.94305 0.89382 0.92674 0.92003 0.93068 0.76213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.19 7.69 71.98 0.55 -2.63 16 2 C 0.10 1.71 0.69 3.61 0.00 1.71 16 3 C -0.13 -1.89 7.81 71.98 0.56 -1.33 16 4 C 0.15 3.31 5.26 86.35 0.45 3.76 16 5 N -0.62 -15.19 2.48 -835.94 -2.07 -17.26 16 6 C 0.70 22.92 8.31 179.05 1.49 24.41 16 7 O -0.64 -26.82 15.83 -3.99 -0.06 -26.89 16 8 N -0.73 -22.02 5.47 -478.55 -2.62 -24.63 16 9 C 0.15 5.58 5.68 86.38 0.49 6.08 16 10 C -0.10 -3.87 5.27 30.59 0.16 -3.71 16 11 C 0.02 1.29 4.97 29.85 0.15 1.44 16 12 C -0.54 -30.27 9.11 25.60 0.23 -30.04 16 13 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 14 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 15 N -0.94 -57.56 13.29 21.45 0.28 -57.27 16 16 Si 0.97 43.80 29.54 68.60 2.03 45.82 16 17 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 18 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 19 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 20 C 0.11 1.89 6.59 86.35 0.57 2.46 16 21 C 0.04 0.52 5.10 86.38 0.44 0.96 16 22 N -0.52 -7.77 4.33 -845.78 -3.66 -11.43 16 23 C 0.04 0.50 4.49 86.30 0.39 0.89 16 24 C 0.08 0.74 7.18 71.98 0.52 1.26 16 25 O -0.58 -7.08 13.61 -148.98 -2.03 -9.10 16 26 H 0.07 1.05 6.95 -2.39 -0.02 1.04 16 27 H 0.04 0.99 5.93 -2.39 -0.01 0.98 16 28 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 29 H 0.07 0.84 6.42 -2.39 -0.02 0.83 16 30 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.07 2.00 7.09 -2.39 -0.02 1.99 16 33 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.41 9.49 5.97 -92.71 -0.55 8.93 16 35 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 38 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 39 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 40 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 41 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 42 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 43 H 0.09 1.32 5.64 -2.39 -0.01 1.31 16 44 H 0.11 1.07 6.33 -2.39 -0.02 1.05 16 45 H 0.04 0.61 6.10 -2.39 -0.01 0.60 16 46 H 0.09 1.07 5.54 -2.39 -0.01 1.05 16 47 H 0.06 0.57 7.21 -2.39 -0.02 0.56 16 48 H 0.06 0.36 8.14 -2.38 -0.02 0.34 16 49 H 0.05 0.39 6.42 -2.39 -0.02 0.37 16 50 H 0.39 1.52 9.12 -74.06 -0.68 0.85 16 Total: -1.00 -75.56 381.93 -1.95 -77.51 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -0.29 Total: 17.79 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: 6.47 Total: 5.47 kcal Atomic # 7 Polarization: -102.54 SS G_CDS: -8.07 Total: -110.60 kcal Atomic # 8 Polarization: -33.90 SS G_CDS: -2.09 Total: -35.99 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Total: -75.56 -1.95 -77.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588337781.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.496 kcal (2) G-P(sol) polarization free energy of solvation -75.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds