Wall clock time and date at job start Fri Apr 10 2020 18:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47582 * 2 1 4 4 C 1.53001 * 109.47134 * 239.99618 * 2 1 3 5 5 H 1.09004 * 109.47036 * 60.00456 * 4 2 1 6 6 C 1.53005 * 109.47358 * 180.02562 * 4 2 1 7 7 O 1.42898 * 109.47128 * 185.00336 * 6 4 2 8 8 C 1.52995 * 109.47371 * 300.00346 * 4 2 1 9 9 N 1.46504 * 109.47473 * 174.99850 * 8 4 2 10 10 C 1.34767 * 120.00416 * 180.02562 * 9 8 4 11 11 O 1.21589 * 120.00003 * 359.97438 * 10 9 8 12 12 N 1.34780 * 120.00363 * 179.97438 * 10 9 8 13 13 C 1.46496 * 120.00026 * 179.97438 * 12 10 9 14 14 C 1.53042 * 109.46239 * 275.02608 * 13 12 10 15 15 C 1.53186 * 109.31623 * 178.60462 * 14 13 12 16 16 N 1.46922 * 108.76765 * 54.65594 * 15 14 13 17 17 C 1.36929 * 120.63301 * 126.40492 * 16 15 14 18 18 H 1.07994 * 120.00260 * 331.83297 * 17 16 15 19 19 C 1.38816 * 120.00008 * 151.82421 * 17 16 15 20 20 N 1.31622 * 120.00146 * 343.07790 * 19 17 16 21 21 Si 1.86800 * 119.99990 * 163.07473 * 19 17 16 22 22 H 1.48504 * 109.47162 * 90.00143 * 21 19 17 23 23 H 1.48504 * 109.47159 * 210.00487 * 21 19 17 24 24 H 1.48496 * 109.47231 * 330.00162 * 21 19 17 25 25 C 1.46932 * 118.73801 * 306.38642 * 16 15 14 26 26 C 1.53046 * 109.45904 * 154.97545 * 13 12 10 27 27 H 1.09001 * 109.47693 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47238 * 300.00497 * 1 2 3 29 29 H 1.09004 * 109.46786 * 60.00079 * 1 2 3 30 30 H 1.08996 * 109.47403 * 119.99979 * 2 1 3 31 31 H 1.08998 * 109.47240 * 59.99504 * 3 2 1 32 32 H 1.08995 * 109.47127 * 180.02562 * 3 2 1 33 33 H 1.09006 * 109.46652 * 300.00206 * 3 2 1 34 34 H 1.09008 * 109.46882 * 305.00312 * 6 4 2 35 35 H 1.09001 * 109.46992 * 65.00060 * 6 4 2 36 36 H 0.96704 * 113.99483 * 179.97438 * 7 6 4 37 37 H 1.09003 * 109.47292 * 294.99904 * 8 4 2 38 38 H 1.09001 * 109.47224 * 55.00034 * 8 4 2 39 39 H 0.97008 * 119.99345 * 0.02562 * 9 8 4 40 40 H 0.97001 * 119.99499 * 359.97438 * 12 10 9 41 41 H 1.09000 * 109.46318 * 34.99881 * 13 12 10 42 42 H 1.09005 * 109.49596 * 298.57154 * 14 13 12 43 43 H 1.08999 * 109.49550 * 58.65983 * 14 13 12 44 44 H 1.09007 * 109.59666 * 294.87212 * 15 14 13 45 45 H 1.08997 * 109.70638 * 174.50992 * 15 14 13 46 46 H 0.97001 * 119.99887 * 179.97438 * 20 19 17 47 47 H 1.09000 * 109.58915 * 293.82269 * 25 16 15 48 48 H 1.09002 * 109.70602 * 173.46444 * 25 16 15 49 49 H 1.09001 * 109.49515 * 301.33224 * 26 13 12 50 50 H 1.08999 * 109.49610 * 61.39797 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 1 1.6766 -0.2075 -2.1392 6 6 3.5700 -0.7219 -1.2489 7 8 4.0463 -1.2913 -2.4700 8 6 1.5299 -2.1638 -1.2492 9 7 1.9175 -2.8189 -2.5010 10 6 1.5734 -4.1026 -2.7244 11 8 0.9418 -4.7173 -1.8869 12 7 1.9295 -4.7051 -3.8763 13 6 1.5560 -6.1007 -4.1188 14 6 2.5974 -7.0250 -3.4837 15 6 2.1854 -8.4831 -3.7092 16 7 1.9840 -8.7003 -5.1482 17 6 2.6343 -9.7149 -5.7984 18 1 3.5902 -10.0631 -5.4362 19 6 2.0646 -10.2960 -6.9230 20 7 0.7844 -10.1241 -7.1757 21 14 3.1150 -11.3219 -8.0778 22 1 3.0924 -12.7405 -7.6389 23 1 2.5757 -11.2221 -9.4578 24 1 4.5120 -10.8189 -8.0548 25 6 1.0713 -7.8083 -5.8764 26 6 1.4957 -6.3577 -5.6263 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.6767 1.9564 0.8899 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 3.9337 0.3018 -1.1591 35 1 3.9329 -1.3116 -0.4071 36 1 5.0103 -1.3235 -2.5391 37 1 1.9645 -2.7029 -0.4074 38 1 0.4436 -2.1651 -1.1597 39 1 2.4217 -2.3285 -3.1691 40 1 2.4331 -4.2145 -4.5446 41 1 0.5789 -6.2971 -3.6776 42 1 3.5701 -6.8465 -3.9421 43 1 2.6568 -6.8252 -2.4138 44 1 1.2571 -8.6875 -3.1754 45 1 2.9696 -9.1471 -3.3456 46 1 0.3864 -10.5299 -7.9618 47 1 0.0523 -7.9576 -5.5194 48 1 1.1199 -8.0244 -6.9437 49 1 0.7708 -5.6830 -6.0817 50 1 2.4788 -6.1851 -6.0644 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588341441.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:25 Heat of formation + Delta-G solvation = -102.558931 kcal Electronic energy + Delta-G solvation = -27034.245384 eV Core-core repulsion = 23288.318258 eV Total energy + Delta-G solvation = -3745.927126 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.19930 -39.59877 -38.80465 -36.62668 -35.95788 -35.15608 -33.82374 -31.83964 -31.31839 -30.32525 -28.64005 -26.97209 -25.81820 -23.99834 -23.73170 -23.03526 -21.80534 -21.07938 -20.72238 -19.25222 -18.59476 -18.09635 -17.47670 -16.80809 -16.80289 -16.01904 -15.90363 -15.59317 -15.52312 -15.35177 -15.08683 -14.86420 -14.74835 -14.38735 -14.29115 -13.98694 -13.66035 -13.40414 -13.19400 -12.99982 -12.97514 -12.62918 -12.60122 -12.50206 -12.39656 -12.22142 -12.01038 -11.86366 -11.79429 -11.56825 -11.54314 -11.39266 -11.33958 -11.13240 -10.72457 -10.55002 -10.20782 -9.60969 -8.70196 -7.86893 -5.32696 1.49050 1.49951 1.60433 1.80680 2.25421 2.52907 3.16654 3.29099 3.48500 3.67292 3.71444 3.91227 3.97705 4.08520 4.13730 4.21736 4.36124 4.42371 4.47254 4.49072 4.61413 4.66016 4.66640 4.78206 4.82454 4.83306 4.87289 4.91053 5.00412 5.04326 5.06447 5.07743 5.14493 5.17102 5.29508 5.30390 5.45667 5.47484 5.50431 5.63622 5.65700 5.69690 5.71034 6.17097 6.39799 6.93523 7.14972 7.27247 7.71292 7.84322 8.38151 9.20455 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.034082 B = 0.002348 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.360417 B =11920.397850 C =12206.797989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.083 4.083 3 C -0.147 4.147 4 C -0.087 4.087 5 H 0.085 0.915 6 C 0.080 3.920 7 O -0.590 6.590 8 C 0.143 3.857 9 N -0.722 5.722 10 C 0.695 3.305 11 O -0.644 6.644 12 N -0.727 5.727 13 C 0.181 3.819 14 C -0.122 4.122 15 C 0.145 3.855 16 N -0.609 5.609 17 C -0.263 4.263 18 H 0.068 0.932 19 C -0.052 4.052 20 N -0.936 5.936 21 Si 0.971 3.029 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.269 1.269 25 C 0.179 3.821 26 C -0.127 4.127 27 H 0.047 0.953 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.044 0.956 36 H 0.397 0.603 37 H 0.047 0.953 38 H 0.055 0.945 39 H 0.414 0.586 40 H 0.408 0.592 41 H 0.053 0.947 42 H 0.065 0.935 43 H 0.055 0.945 44 H 0.006 0.994 45 H 0.058 0.942 46 H 0.251 0.749 47 H -0.006 1.006 48 H 0.065 0.935 49 H 0.075 0.925 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.557 27.027 11.640 30.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.102 4.102 3 C -0.204 4.204 4 C -0.106 4.106 5 H 0.103 0.897 6 C 0.002 3.998 7 O -0.399 6.399 8 C 0.019 3.981 9 N -0.381 5.381 10 C 0.394 3.606 11 O -0.527 6.527 12 N -0.382 5.382 13 C 0.076 3.924 14 C -0.162 4.162 15 C 0.019 3.981 16 N -0.332 5.332 17 C -0.393 4.393 18 H 0.085 0.915 19 C -0.247 4.247 20 N -0.582 5.582 21 Si 0.798 3.202 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.193 1.193 25 C 0.053 3.947 26 C -0.167 4.167 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.063 0.937 36 H 0.248 0.752 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.254 0.746 40 H 0.243 0.757 41 H 0.071 0.929 42 H 0.084 0.916 43 H 0.073 0.927 44 H 0.024 0.976 45 H 0.077 0.923 46 H 0.060 0.940 47 H 0.012 0.988 48 H 0.083 0.917 49 H 0.094 0.906 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.287 26.388 12.158 29.531 hybrid contribution 0.962 -0.630 -0.972 1.505 sum 6.248 25.757 11.186 28.768 Atomic orbital electron populations 1.21936 0.94919 1.01711 1.02528 1.20977 0.96041 0.96856 0.96291 1.21903 1.01560 0.94454 1.02510 1.21452 0.95098 0.93602 1.00445 0.89703 1.22336 0.93155 0.97967 0.86330 1.86203 1.28732 1.85268 1.39650 1.21293 0.99205 0.92410 0.85208 1.45104 1.60284 1.10328 1.22348 1.16253 0.79641 0.82301 0.82356 1.90871 1.47975 1.66363 1.47470 1.45112 1.60646 1.13328 1.19107 1.20469 0.97115 0.79205 0.95628 1.22166 0.98998 0.95558 0.99485 1.20961 0.97551 0.94617 0.84982 1.44350 1.52245 1.33127 1.03515 1.19513 0.99627 1.11141 1.09046 0.91462 1.25854 0.96205 1.00071 1.02553 1.70194 1.11031 1.48631 1.28360 0.85235 0.78632 0.78343 0.77950 1.21337 1.21728 1.19329 1.20562 0.90212 0.86528 0.97404 1.22254 1.02291 0.98295 0.93827 0.93374 0.91465 0.92374 0.90524 0.91757 0.91549 0.92374 0.91067 0.93728 0.75209 0.93472 0.92628 0.74619 0.75656 0.92919 0.91583 0.92652 0.97636 0.92331 0.94001 0.98828 0.91710 0.90650 0.91082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 8.85 71.98 0.64 -1.18 16 2 C -0.08 -0.85 2.51 -10.80 -0.03 -0.87 16 3 C -0.15 -1.04 8.85 71.98 0.64 -0.40 16 4 C -0.09 -1.13 1.88 -10.79 -0.02 -1.15 16 5 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 6 C 0.08 0.82 6.21 71.98 0.45 1.27 16 7 O -0.59 -6.77 10.88 -148.98 -1.62 -8.39 16 8 C 0.14 3.00 4.85 86.38 0.42 3.42 16 9 N -0.72 -17.10 5.01 -478.54 -2.40 -19.49 16 10 C 0.69 22.52 8.53 179.06 1.53 24.05 16 11 O -0.64 -26.99 16.01 -3.99 -0.06 -27.06 16 12 N -0.73 -21.65 5.08 -457.68 -2.33 -23.97 16 13 C 0.18 6.69 2.42 45.02 0.11 6.79 16 14 C -0.12 -4.67 5.65 30.67 0.17 -4.49 16 15 C 0.15 6.59 6.52 86.36 0.56 7.15 16 16 N -0.61 -31.70 2.99 -699.10 -2.09 -33.79 16 17 C -0.26 -14.73 9.58 84.04 0.81 -13.92 16 18 H 0.07 3.66 7.88 -2.91 -0.02 3.63 16 19 C -0.05 -2.91 4.92 84.86 0.42 -2.49 16 20 N -0.94 -56.03 11.19 21.65 0.24 -55.79 16 21 Si 0.97 45.01 29.59 68.60 2.03 47.04 16 22 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 23 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 24 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 25 C 0.18 8.85 5.30 86.36 0.46 9.30 16 26 C -0.13 -4.76 5.55 30.67 0.17 -4.59 16 27 H 0.05 0.72 6.32 -2.39 -0.02 0.71 16 28 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.07 0.36 6.32 -2.39 -0.02 0.34 16 33 H 0.06 0.42 8.14 -2.38 -0.02 0.40 16 34 H 0.07 0.46 6.17 -2.38 -0.01 0.45 16 35 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.40 1.71 9.12 -74.05 -0.68 1.03 16 37 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.06 1.30 6.17 -2.39 -0.01 1.29 16 39 H 0.41 8.10 6.30 -92.70 -0.58 7.51 16 40 H 0.41 9.49 8.62 -92.71 -0.80 8.69 16 41 H 0.05 2.27 7.58 -2.39 -0.02 2.25 16 42 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 43 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.01 0.27 8.14 -2.38 -0.02 0.25 16 45 H 0.06 2.57 7.93 -2.39 -0.02 2.55 16 46 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 47 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 48 H 0.06 3.53 6.07 -2.39 -0.01 3.52 16 49 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 50 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -73.29 384.45 -1.03 -74.32 By element: Atomic # 1 Polarization: 25.35 SS G_CDS: -1.11 Total: 24.24 kcal Atomic # 6 Polarization: 16.57 SS G_CDS: 6.32 Total: 22.89 kcal Atomic # 7 Polarization: -126.47 SS G_CDS: -6.57 Total: -133.04 kcal Atomic # 8 Polarization: -33.76 SS G_CDS: -1.68 Total: -35.44 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -73.29 -1.03 -74.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588341441.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.243 kcal (2) G-P(sol) polarization free energy of solvation -73.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds