Wall clock time and date at job start Fri Apr 10 2020 18:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42900 * 113.99468 * 2 1 4 4 C 1.53004 * 109.46800 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47156 * 60.00063 * 4 3 2 6 6 C 1.52998 * 109.46902 * 300.00467 * 4 3 2 7 7 C 1.52996 * 109.47313 * 180.02562 * 4 3 2 8 8 N 1.46502 * 109.47048 * 179.97438 * 7 4 3 9 9 C 1.34778 * 119.99545 * 180.02562 * 8 7 4 10 10 O 1.21585 * 120.00569 * 359.97438 * 9 8 7 11 11 N 1.34781 * 119.99776 * 180.02562 * 9 8 7 12 12 C 1.46500 * 119.99994 * 179.97438 * 11 9 8 13 13 C 1.53076 * 109.43981 * 84.79590 * 12 11 9 14 14 C 1.53183 * 109.29478 * 181.23571 * 13 12 11 15 15 N 1.46930 * 108.89468 * 305.57480 * 14 13 12 16 16 C 1.36937 * 120.63259 * 233.51494 * 15 14 13 17 17 H 1.08000 * 119.99761 * 151.83401 * 16 15 14 18 18 C 1.38806 * 120.00219 * 331.83653 * 16 15 14 19 19 N 1.31624 * 120.00191 * 343.07619 * 18 16 15 20 20 Si 1.86800 * 120.00146 * 163.07294 * 18 16 15 21 21 H 1.48506 * 109.46812 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47258 * 119.99807 * 20 18 16 23 23 H 1.48499 * 109.47344 * 240.00342 * 20 18 16 24 24 C 1.46925 * 118.73328 * 53.53726 * 15 14 13 25 25 C 1.53033 * 109.45902 * 204.99610 * 12 11 9 26 26 H 1.08997 * 109.47191 * 59.99702 * 1 2 3 27 27 H 1.08998 * 109.46992 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46726 * 299.99495 * 1 2 3 29 29 H 1.09000 * 109.46915 * 60.00831 * 3 2 1 30 30 H 1.09000 * 109.47659 * 300.00383 * 3 2 1 31 31 H 1.09000 * 109.47522 * 180.02562 * 5 4 3 32 32 H 1.09004 * 109.47567 * 300.00259 * 5 4 3 33 33 H 1.09000 * 109.46905 * 60.00264 * 5 4 3 34 34 H 1.08998 * 109.47418 * 299.99338 * 6 4 3 35 35 H 1.09002 * 109.47554 * 59.99851 * 6 4 3 36 36 H 1.09010 * 109.47156 * 180.02562 * 6 4 3 37 37 H 1.09000 * 109.46822 * 60.00171 * 7 4 3 38 38 H 1.09000 * 109.47239 * 300.00036 * 7 4 3 39 39 H 0.96997 * 120.00325 * 0.02562 * 8 7 4 40 40 H 0.97007 * 119.99982 * 359.97438 * 11 9 8 41 41 H 1.08994 * 109.45870 * 324.97548 * 12 11 9 42 42 H 1.09005 * 109.39190 * 61.35477 * 13 12 11 43 43 H 1.09004 * 109.62337 * 301.25270 * 13 12 11 44 44 H 1.09005 * 109.58619 * 185.72200 * 14 13 12 45 45 H 1.08998 * 109.58733 * 65.43770 * 14 13 12 46 46 H 0.96995 * 120.00379 * 180.02562 * 19 18 16 47 47 H 1.09001 * 109.58688 * 66.18006 * 24 15 14 48 48 H 1.08996 * 109.58570 * 186.45714 * 24 15 14 49 49 H 1.09003 * 109.49897 * 58.68032 * 25 12 11 50 50 H 1.09000 * 109.52987 * 298.59684 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 3.9864 0.4258 -1.2502 6 6 3.9874 0.4252 1.2482 7 6 4.1577 2.5824 0.0000 8 7 5.6182 2.4668 0.0000 9 6 6.3821 3.5772 0.0010 10 8 5.8592 4.6749 0.0015 11 7 7.7257 3.4708 0.0005 12 6 8.5560 4.6777 0.0011 13 6 8.7374 5.1707 1.4389 14 6 9.5801 6.4498 1.4330 15 7 10.8373 6.1881 0.7189 16 6 12.0435 6.4604 1.3070 17 1 12.9193 5.8918 1.0313 18 6 12.1407 7.4674 2.2574 19 7 11.1887 8.3707 2.3589 20 14 13.6224 7.5405 3.3926 21 1 14.5434 6.4190 3.0772 22 1 14.3307 8.8313 3.1995 23 1 13.1714 7.4294 4.8031 24 6 10.7754 5.6289 -0.6384 25 6 9.9222 4.3569 -0.6093 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6886 1.8463 0.8901 30 1 1.6885 1.8465 -0.8899 31 1 5.0730 0.3393 -1.2505 32 1 3.5431 -0.5701 -1.2503 33 1 3.6644 0.9669 -2.1399 34 1 3.6662 0.9659 2.1385 35 1 3.5441 -0.5706 1.2482 36 1 5.0741 0.3395 1.2480 37 1 3.8364 3.1227 0.8905 38 1 3.8358 3.1239 -0.8895 39 1 6.0354 1.5911 -0.0008 40 1 8.1429 2.5950 -0.0002 41 1 8.0683 5.4543 -0.5880 42 1 9.2450 4.4032 2.0233 43 1 7.7627 5.3792 1.8801 44 1 9.7979 6.7488 2.4584 45 1 9.0324 7.2459 0.9287 46 1 11.2568 9.0745 3.0229 47 1 10.3239 6.3563 -1.3131 48 1 11.7819 5.3886 -0.9808 49 1 9.7885 3.9852 -1.6252 50 1 10.4213 3.5979 -0.0069 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589877966.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:33 Heat of formation + Delta-G solvation = -67.361114 kcal Electronic energy + Delta-G solvation = -26824.573639 eV Core-core repulsion = 23080.172805 eV Total energy + Delta-G solvation = -3744.400834 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.13922 -38.97759 -37.52848 -36.50232 -34.30166 -33.27069 -31.91332 -29.97321 -29.38434 -27.81882 -27.57037 -26.90362 -25.43253 -24.53030 -22.19830 -21.94431 -20.54515 -19.54432 -19.37956 -18.08498 -16.99807 -16.65831 -16.27451 -15.99752 -15.54288 -15.36821 -14.80299 -14.43268 -14.24569 -14.21320 -13.74126 -13.62099 -13.47407 -13.38082 -13.07901 -12.95549 -12.53336 -12.31125 -12.16201 -12.02701 -11.95955 -11.45095 -11.22463 -11.16538 -11.08075 -10.92358 -10.88169 -10.71655 -10.33885 -10.18560 -10.06062 -10.05221 -9.93169 -9.71850 -9.51020 -9.09647 -8.56727 -8.34813 -6.64906 -5.75528 -3.18645 2.76182 3.38907 3.43601 3.45592 3.46623 3.48743 4.33397 4.38579 4.47989 4.51789 4.54612 4.88833 4.93137 4.95300 5.13766 5.15905 5.26438 5.34373 5.38944 5.42455 5.46614 5.50332 5.53937 5.65378 5.69266 5.70402 5.73392 5.88994 6.00808 6.02096 6.13969 6.28516 6.42001 6.47087 6.50769 6.64485 6.69804 6.74427 6.81672 6.95645 7.00062 7.16777 7.43544 7.73087 7.82810 8.20719 8.48303 8.83265 9.24118 9.87528 10.44469 11.32945 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.033599 B = 0.002211 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.151588 B =12662.035660 C =12874.392422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.386 6.386 3 C 0.073 3.927 4 C -0.075 4.075 5 C -0.137 4.137 6 C -0.138 4.138 7 C 0.151 3.849 8 N -0.748 5.748 9 C 0.701 3.299 10 O -0.589 6.589 11 N -0.740 5.740 12 C 0.169 3.831 13 C -0.146 4.146 14 C 0.173 3.827 15 N -0.593 5.593 16 C -0.253 4.253 17 H 0.066 0.934 18 C 0.001 3.999 19 N -0.901 5.901 20 Si 0.902 3.098 21 H -0.278 1.278 22 H -0.290 1.290 23 H -0.289 1.289 24 C 0.149 3.851 25 C -0.138 4.138 26 H 0.041 0.959 27 H 0.085 0.915 28 H 0.041 0.959 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.055 0.945 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.393 0.607 40 H 0.389 0.611 41 H 0.081 0.919 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.088 0.912 45 H 0.020 0.980 46 H 0.253 0.747 47 H 0.020 0.980 48 H 0.058 0.942 49 H 0.054 0.946 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.097 -18.824 -5.811 26.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.305 6.305 3 C -0.004 4.004 4 C -0.075 4.075 5 C -0.195 4.195 6 C -0.195 4.195 7 C 0.026 3.974 8 N -0.406 5.406 9 C 0.401 3.599 10 O -0.467 6.467 11 N -0.393 5.393 12 C 0.065 3.935 13 C -0.187 4.187 14 C 0.047 3.953 15 N -0.315 5.315 16 C -0.382 4.382 17 H 0.084 0.916 18 C -0.197 4.197 19 N -0.545 5.545 20 Si 0.732 3.268 21 H -0.203 1.203 22 H -0.217 1.217 23 H -0.216 1.216 24 C 0.021 3.979 25 C -0.178 4.178 26 H 0.059 0.941 27 H 0.104 0.896 28 H 0.059 0.941 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.228 0.772 40 H 0.222 0.778 41 H 0.099 0.901 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.106 0.894 45 H 0.039 0.961 46 H 0.064 0.936 47 H 0.038 0.962 48 H 0.076 0.924 49 H 0.073 0.927 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.458 -17.789 -5.705 26.262 hybrid contribution 0.796 -0.486 0.674 1.151 sum -17.661 -18.275 -5.031 25.908 Atomic orbital electron populations 1.22740 0.81004 1.02721 1.00055 1.87848 1.19542 1.27645 1.95423 1.22436 0.92505 0.84768 1.00668 1.20795 0.93577 0.95481 0.97656 1.21798 1.00921 1.00720 0.96029 1.21805 1.00952 1.00715 0.96061 1.21020 0.79089 0.94840 1.02416 1.45087 1.06203 1.07734 1.81551 1.15987 0.81743 0.84273 0.77870 1.90931 1.72741 1.25364 1.57673 1.45516 1.04125 1.10292 1.79417 1.20896 0.89452 0.85170 0.97955 1.22576 1.00019 1.01078 0.95002 1.20754 0.84597 0.90590 0.99360 1.44110 1.02764 1.73952 1.10713 1.19208 0.87679 1.12164 1.19190 0.91631 1.25071 0.97780 0.95182 1.01690 1.70048 1.34333 1.14322 1.35807 0.86237 0.82337 0.77387 0.80879 1.20282 1.21748 1.21591 1.20838 0.97081 0.91625 0.88332 1.22331 0.95279 1.01024 0.99170 0.94066 0.89646 0.94051 0.92832 0.92876 0.92624 0.91521 0.92545 0.92487 0.91517 0.92599 0.91521 0.91576 0.77204 0.77803 0.90138 0.92871 0.92816 0.89360 0.96139 0.93650 0.96200 0.92364 0.92687 0.91938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.12 9.35 -35.23 -0.33 -3.45 16 3 C 0.07 0.54 4.81 37.16 0.18 0.72 16 4 C -0.07 -0.58 0.61 -154.51 -0.09 -0.67 16 5 C -0.14 -1.00 8.16 37.16 0.30 -0.70 16 6 C -0.14 -1.05 8.15 37.16 0.30 -0.75 16 7 C 0.15 1.52 4.56 -4.04 -0.02 1.50 16 8 N -0.75 -8.18 4.96 -65.22 -0.32 -8.50 16 9 C 0.70 10.82 8.53 -86.91 -0.74 10.08 16 10 O -0.59 -11.83 16.01 5.29 0.08 -11.75 16 11 N -0.74 -10.65 5.08 -58.62 -0.30 -10.95 16 12 C 0.17 3.02 2.41 -67.87 -0.16 2.85 16 13 C -0.15 -3.00 5.66 -26.60 -0.15 -3.15 16 14 C 0.17 4.30 5.30 -3.71 -0.02 4.28 16 15 N -0.59 -14.95 3.00 -172.33 -0.52 -15.47 16 16 C -0.25 -6.95 9.58 -15.06 -0.14 -7.10 16 17 H 0.07 1.76 7.89 -52.49 -0.41 1.35 16 18 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 19 N -0.90 -26.59 11.20 55.49 0.62 -25.97 16 20 Si 0.90 21.81 29.59 -169.99 -5.03 16.78 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 24 C 0.15 3.09 6.52 -3.71 -0.02 3.06 16 25 C -0.14 -2.32 5.55 -26.62 -0.15 -2.47 16 26 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 27 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.38 6.86 -51.93 -0.36 0.02 16 32 H 0.07 0.50 7.68 -51.93 -0.40 0.10 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.52 7.68 -51.93 -0.40 0.12 16 36 H 0.06 0.40 6.86 -51.92 -0.36 0.04 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.39 3.28 6.18 -40.82 -0.25 3.03 16 40 H 0.39 4.37 8.62 -40.82 -0.35 4.02 16 41 H 0.08 1.63 7.58 -51.93 -0.39 1.24 16 42 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 44 H 0.09 2.44 6.06 -51.93 -0.31 2.12 16 45 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 47 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 48 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 49 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 50 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 390.04 15.07 5.88 5.88 Total: -1.00 -33.06 390.04 -8.73 -41.79 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -9.12 Total: 2.73 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: 0.31 Total: 8.91 kcal Atomic # 7 Polarization: -60.38 SS G_CDS: -0.52 Total: -60.90 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.24 Total: -15.19 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.06 -8.73 -41.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589877966.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.570 kcal (2) G-P(sol) polarization free energy of solvation -33.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds