Wall clock time and date at job start Fri Apr 10 2020 18:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42900 * 113.99468 * 2 1 4 4 C 1.53004 * 109.46800 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47156 * 60.00063 * 4 3 2 6 6 C 1.52998 * 109.46902 * 300.00467 * 4 3 2 7 7 C 1.52996 * 109.47313 * 180.02562 * 4 3 2 8 8 N 1.46502 * 109.47048 * 179.97438 * 7 4 3 9 9 C 1.34778 * 119.99545 * 180.02562 * 8 7 4 10 10 O 1.21585 * 120.00569 * 359.97438 * 9 8 7 11 11 N 1.34781 * 119.99776 * 180.02562 * 9 8 7 12 12 C 1.46500 * 119.99994 * 179.97438 * 11 9 8 13 13 C 1.53076 * 109.43981 * 84.79590 * 12 11 9 14 14 C 1.53183 * 109.29478 * 181.23571 * 13 12 11 15 15 N 1.46930 * 108.89468 * 305.57480 * 14 13 12 16 16 C 1.36937 * 120.63259 * 233.51494 * 15 14 13 17 17 H 1.08000 * 119.99761 * 151.83401 * 16 15 14 18 18 C 1.38806 * 120.00219 * 331.83653 * 16 15 14 19 19 N 1.31624 * 120.00191 * 343.07619 * 18 16 15 20 20 Si 1.86800 * 120.00146 * 163.07294 * 18 16 15 21 21 H 1.48506 * 109.46812 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47258 * 119.99807 * 20 18 16 23 23 H 1.48499 * 109.47344 * 240.00342 * 20 18 16 24 24 C 1.46925 * 118.73328 * 53.53726 * 15 14 13 25 25 C 1.53033 * 109.45902 * 204.99610 * 12 11 9 26 26 H 1.08997 * 109.47191 * 59.99702 * 1 2 3 27 27 H 1.08998 * 109.46992 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46726 * 299.99495 * 1 2 3 29 29 H 1.09000 * 109.46915 * 60.00831 * 3 2 1 30 30 H 1.09000 * 109.47659 * 300.00383 * 3 2 1 31 31 H 1.09000 * 109.47522 * 180.02562 * 5 4 3 32 32 H 1.09004 * 109.47567 * 300.00259 * 5 4 3 33 33 H 1.09000 * 109.46905 * 60.00264 * 5 4 3 34 34 H 1.08998 * 109.47418 * 299.99338 * 6 4 3 35 35 H 1.09002 * 109.47554 * 59.99851 * 6 4 3 36 36 H 1.09010 * 109.47156 * 180.02562 * 6 4 3 37 37 H 1.09000 * 109.46822 * 60.00171 * 7 4 3 38 38 H 1.09000 * 109.47239 * 300.00036 * 7 4 3 39 39 H 0.96997 * 120.00325 * 0.02562 * 8 7 4 40 40 H 0.97007 * 119.99982 * 359.97438 * 11 9 8 41 41 H 1.08994 * 109.45870 * 324.97548 * 12 11 9 42 42 H 1.09005 * 109.39190 * 61.35477 * 13 12 11 43 43 H 1.09004 * 109.62337 * 301.25270 * 13 12 11 44 44 H 1.09005 * 109.58619 * 185.72200 * 14 13 12 45 45 H 1.08998 * 109.58733 * 65.43770 * 14 13 12 46 46 H 0.96995 * 120.00379 * 180.02562 * 19 18 16 47 47 H 1.09001 * 109.58688 * 66.18006 * 24 15 14 48 48 H 1.08996 * 109.58570 * 186.45714 * 24 15 14 49 49 H 1.09003 * 109.49897 * 58.68032 * 25 12 11 50 50 H 1.09000 * 109.52987 * 298.59684 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 3.9864 0.4258 -1.2502 6 6 3.9874 0.4252 1.2482 7 6 4.1577 2.5824 0.0000 8 7 5.6182 2.4668 0.0000 9 6 6.3821 3.5772 0.0010 10 8 5.8592 4.6749 0.0015 11 7 7.7257 3.4708 0.0005 12 6 8.5560 4.6777 0.0011 13 6 8.7374 5.1707 1.4389 14 6 9.5801 6.4498 1.4330 15 7 10.8373 6.1881 0.7189 16 6 12.0435 6.4604 1.3070 17 1 12.9193 5.8918 1.0313 18 6 12.1407 7.4674 2.2574 19 7 11.1887 8.3707 2.3589 20 14 13.6224 7.5405 3.3926 21 1 14.5434 6.4190 3.0772 22 1 14.3307 8.8313 3.1995 23 1 13.1714 7.4294 4.8031 24 6 10.7754 5.6289 -0.6384 25 6 9.9222 4.3569 -0.6093 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6886 1.8463 0.8901 30 1 1.6885 1.8465 -0.8899 31 1 5.0730 0.3393 -1.2505 32 1 3.5431 -0.5701 -1.2503 33 1 3.6644 0.9669 -2.1399 34 1 3.6662 0.9659 2.1385 35 1 3.5441 -0.5706 1.2482 36 1 5.0741 0.3395 1.2480 37 1 3.8364 3.1227 0.8905 38 1 3.8358 3.1239 -0.8895 39 1 6.0354 1.5911 -0.0008 40 1 8.1429 2.5950 -0.0002 41 1 8.0683 5.4543 -0.5880 42 1 9.2450 4.4032 2.0233 43 1 7.7627 5.3792 1.8801 44 1 9.7979 6.7488 2.4584 45 1 9.0324 7.2459 0.9287 46 1 11.2568 9.0745 3.0229 47 1 10.3239 6.3563 -1.3131 48 1 11.7819 5.3886 -0.9808 49 1 9.7885 3.9852 -1.6252 50 1 10.4213 3.5979 -0.0069 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589877966.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:33 Heat of formation + Delta-G solvation = -90.250188 kcal Electronic energy + Delta-G solvation = -26825.566184 eV Core-core repulsion = 23080.172805 eV Total energy + Delta-G solvation = -3745.393379 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.29868 -39.80218 -38.97879 -37.36869 -35.93444 -34.41130 -33.59615 -31.70048 -31.09344 -28.33398 -28.16129 -27.79048 -26.78118 -25.70504 -23.89404 -23.60626 -21.80787 -21.04476 -20.28127 -19.29233 -18.64490 -17.67887 -17.09327 -16.85521 -16.76205 -16.43659 -16.24217 -15.68810 -15.41738 -15.34214 -15.23527 -15.05630 -14.73570 -14.31926 -14.29480 -14.07296 -13.99509 -13.63363 -13.17203 -13.01802 -12.76557 -12.68970 -12.64422 -12.56035 -12.43765 -12.10382 -12.00742 -11.85437 -11.83635 -11.80972 -11.53609 -11.51939 -11.42254 -11.18027 -10.58546 -10.58324 -10.28464 -9.70422 -8.70182 -7.86357 -5.32864 1.47465 1.49061 1.59981 1.68712 2.20791 2.52335 2.81562 3.28478 3.39666 3.68476 3.72673 3.75798 3.90794 3.94041 4.12267 4.31188 4.37131 4.43036 4.45794 4.49953 4.58118 4.63385 4.68012 4.69545 4.78544 4.82386 4.87457 4.88397 4.89751 5.02615 5.03932 5.07822 5.10964 5.12910 5.15890 5.34051 5.40712 5.42053 5.46821 5.51235 5.63507 5.65705 5.71222 6.06221 6.22752 6.39839 7.14103 7.16311 7.64984 7.85442 8.38395 9.20838 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.033599 B = 0.002211 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.151588 B =12662.035660 C =12874.392422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.401 6.401 3 C 0.072 3.928 4 C -0.065 4.065 5 C -0.134 4.134 6 C -0.136 4.136 7 C 0.152 3.848 8 N -0.726 5.726 9 C 0.699 3.301 10 O -0.639 6.639 11 N -0.725 5.725 12 C 0.181 3.819 13 C -0.130 4.130 14 C 0.183 3.817 15 N -0.609 5.609 16 C -0.259 4.259 17 H 0.075 0.925 18 C -0.057 4.057 19 N -0.939 5.939 20 Si 0.969 3.031 21 H -0.261 1.261 22 H -0.294 1.294 23 H -0.293 1.293 24 C 0.141 3.859 25 C -0.120 4.120 26 H 0.047 0.953 27 H 0.097 0.903 28 H 0.046 0.954 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.053 0.947 34 H 0.050 0.950 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.055 0.945 38 H 0.059 0.941 39 H 0.410 0.590 40 H 0.411 0.589 41 H 0.054 0.946 42 H 0.060 0.940 43 H 0.043 0.957 44 H 0.054 0.946 45 H -0.012 1.012 46 H 0.249 0.751 47 H 0.011 0.989 48 H 0.069 0.931 49 H 0.091 0.909 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.744 -21.838 -6.502 28.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.320 6.320 3 C -0.005 4.005 4 C -0.066 4.066 5 C -0.191 4.191 6 C -0.193 4.193 7 C 0.027 3.973 8 N -0.384 5.384 9 C 0.398 3.602 10 O -0.520 6.520 11 N -0.380 5.380 12 C 0.076 3.924 13 C -0.170 4.170 14 C 0.056 3.944 15 N -0.333 5.333 16 C -0.389 4.389 17 H 0.092 0.908 18 C -0.252 4.252 19 N -0.586 5.586 20 Si 0.798 3.202 21 H -0.185 1.185 22 H -0.221 1.221 23 H -0.219 1.219 24 C 0.015 3.985 25 C -0.159 4.159 26 H 0.066 0.934 27 H 0.115 0.885 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.248 0.752 40 H 0.247 0.753 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.061 0.939 44 H 0.072 0.928 45 H 0.006 0.994 46 H 0.058 0.942 47 H 0.029 0.971 48 H 0.087 0.913 49 H 0.110 0.890 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -18.104 -20.910 -6.425 28.395 hybrid contribution 0.608 0.442 0.834 1.123 sum -17.496 -20.468 -5.591 27.501 Atomic orbital electron populations 1.22900 0.79796 1.03720 1.00635 1.87813 1.20918 1.27761 1.95539 1.22433 0.92247 0.84843 1.00988 1.20689 0.93784 0.93913 0.98192 1.21772 1.01407 1.00490 0.95477 1.21784 1.01361 1.00540 0.95602 1.21061 0.78377 0.96266 1.01560 1.44875 1.06364 1.07308 1.79884 1.16162 0.82015 0.84445 0.77551 1.90911 1.73650 1.27654 1.59808 1.45087 1.03641 1.10170 1.79106 1.20492 0.90534 0.85942 0.95443 1.22319 0.98421 0.98994 0.97279 1.20458 0.85131 0.91875 0.96949 1.44356 1.02075 1.74226 1.12606 1.19607 0.88652 1.11630 1.18985 0.90768 1.25897 1.00667 0.95137 1.03476 1.70220 1.36561 1.15181 1.36594 0.85175 0.79231 0.77455 0.78388 1.18532 1.22126 1.21950 1.21055 0.98629 0.93002 0.85840 1.22122 0.93342 0.98970 1.01503 0.93409 0.88503 0.93564 0.92723 0.92461 0.91810 0.91504 0.92745 0.93065 0.91441 0.91903 0.92698 0.92252 0.75231 0.75307 0.92768 0.92085 0.93874 0.92777 0.99405 0.94222 0.97096 0.91288 0.89028 0.90556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.49 16 2 O -0.40 -5.87 9.35 -148.98 -1.39 -7.26 16 3 C 0.07 0.98 4.81 71.98 0.35 1.33 16 4 C -0.07 -0.90 0.61 -52.18 -0.03 -0.93 16 5 C -0.13 -1.66 8.16 71.98 0.59 -1.07 16 6 C -0.14 -1.80 8.15 71.98 0.59 -1.21 16 7 C 0.15 2.88 4.56 86.38 0.39 3.27 16 8 N -0.73 -14.43 4.96 -478.53 -2.37 -16.81 16 9 C 0.70 20.57 8.53 179.05 1.53 22.10 16 10 O -0.64 -25.72 16.01 -3.98 -0.06 -25.78 16 11 N -0.73 -19.12 5.08 -457.64 -2.33 -21.44 16 12 C 0.18 6.24 2.41 45.03 0.11 6.35 16 13 C -0.13 -5.33 5.66 30.68 0.17 -5.15 16 14 C 0.18 9.38 5.30 86.36 0.46 9.84 16 15 N -0.61 -30.89 3.00 -699.11 -2.09 -32.99 16 16 C -0.26 -14.20 9.58 84.03 0.81 -13.39 16 17 H 0.07 3.88 7.89 -2.91 -0.02 3.86 16 18 C -0.06 -3.22 4.92 84.86 0.42 -2.81 16 19 N -0.94 -57.37 11.20 21.65 0.24 -57.13 16 20 Si 0.97 45.23 29.59 68.60 2.03 47.26 16 21 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 22 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 23 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 24 C 0.14 5.67 6.52 86.36 0.56 6.23 16 25 C -0.12 -3.67 5.55 30.67 0.17 -3.50 16 26 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 27 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.67 6.86 -2.39 -0.02 0.65 16 32 H 0.07 0.86 7.68 -2.38 -0.02 0.84 16 33 H 0.05 0.70 8.14 -2.39 -0.02 0.69 16 34 H 0.05 0.74 8.14 -2.39 -0.02 0.73 16 35 H 0.07 0.91 7.68 -2.39 -0.02 0.90 16 36 H 0.06 0.73 6.86 -2.38 -0.02 0.71 16 37 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.41 5.54 6.18 -92.71 -0.57 4.97 16 40 H 0.41 7.57 8.62 -92.70 -0.80 6.78 16 41 H 0.05 2.20 7.58 -2.39 -0.02 2.18 16 42 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 43 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 44 H 0.05 3.13 6.06 -2.38 -0.01 3.12 16 45 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 46 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 47 H 0.01 0.46 8.14 -2.39 -0.02 0.45 16 48 H 0.07 2.61 7.93 -2.39 -0.02 2.60 16 49 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 50 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -73.77 390.04 0.92 -72.85 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -0.46 Total: 18.75 kcal Atomic # 6 Polarization: 15.19 SS G_CDS: 7.35 Total: 22.55 kcal Atomic # 7 Polarization: -121.81 SS G_CDS: -6.55 Total: -128.37 kcal Atomic # 8 Polarization: -31.59 SS G_CDS: -1.46 Total: -33.05 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -73.77 0.92 -72.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589877966.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.397 kcal (2) G-P(sol) polarization free energy of solvation -73.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds