Wall clock time and date at job start Fri Apr 10 2020 18:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47315 * 2 1 4 4 N 1.46503 * 109.47142 * 119.99897 * 2 1 3 5 5 C 1.34780 * 119.99790 * 275.00442 * 4 2 1 6 6 O 1.21588 * 120.00229 * 359.97438 * 5 4 2 7 7 N 1.34771 * 119.99803 * 179.97438 * 5 4 2 8 8 C 1.46504 * 119.99846 * 179.97438 * 7 5 4 9 9 C 1.53009 * 109.47047 * 179.97438 * 8 7 5 10 10 C 1.52998 * 109.46769 * 60.00145 * 9 8 7 11 11 C 1.53003 * 109.47024 * 300.00369 * 9 8 7 12 12 C 1.50693 * 109.46926 * 179.97438 * 9 8 7 13 13 H 1.08000 * 120.00569 * 358.05229 * 12 9 8 14 14 C 1.37883 * 119.99892 * 178.04629 * 12 9 8 15 15 N 1.31517 * 119.99812 * 2.89962 * 14 12 9 16 16 Si 1.86795 * 120.00033 * 182.89134 * 14 12 9 17 17 H 1.48503 * 109.47152 * 84.99409 * 16 14 12 18 18 H 1.48497 * 109.47596 * 324.99705 * 16 14 12 19 19 H 1.48499 * 109.47345 * 204.99136 * 16 14 12 20 20 C 1.53005 * 109.47462 * 239.99945 * 2 1 3 21 21 H 1.08995 * 109.50930 * 185.00615 * 20 2 1 22 22 C 1.53095 * 109.50695 * 64.91232 * 20 2 1 23 23 N 1.47011 * 109.25585 * 183.21960 * 22 20 2 24 24 C 1.46901 * 110.99800 * 182.39549 * 23 22 20 25 25 C 1.47011 * 110.75593 * 58.61966 * 23 22 20 26 26 C 1.53100 * 109.25733 * 301.38316 * 25 23 22 27 27 O 1.43017 * 109.49986 * 305.08880 * 20 2 1 28 28 H 1.08991 * 109.46941 * 300.00307 * 1 2 3 29 29 H 1.09009 * 109.46543 * 60.00314 * 1 2 3 30 30 H 1.08998 * 109.46829 * 179.97438 * 1 2 3 31 31 H 0.96999 * 119.99934 * 94.99887 * 4 2 1 32 32 H 0.96994 * 120.00443 * 359.97438 * 7 5 4 33 33 H 1.09001 * 109.47194 * 60.00451 * 8 7 5 34 34 H 1.08997 * 109.47259 * 299.99580 * 8 7 5 35 35 H 1.09001 * 109.46690 * 180.02562 * 10 9 8 36 36 H 1.08999 * 109.47466 * 299.99818 * 10 9 8 37 37 H 1.08997 * 109.47625 * 60.00285 * 10 9 8 38 38 H 1.09004 * 109.46489 * 294.05415 * 11 9 8 39 39 H 1.08992 * 109.47480 * 54.05364 * 11 9 8 40 40 H 1.08993 * 109.46657 * 174.05900 * 11 9 8 41 41 H 0.96997 * 119.99974 * 179.97438 * 15 14 12 42 42 H 1.08997 * 109.50893 * 303.15291 * 22 20 2 43 43 H 1.09000 * 109.50282 * 63.24056 * 22 20 2 44 44 H 1.08990 * 109.47513 * 59.99885 * 24 23 22 45 45 H 1.09002 * 109.46898 * 180.02562 * 24 23 22 46 46 H 1.09002 * 109.46964 * 299.99799 * 24 23 22 47 47 H 1.09000 * 109.50927 * 61.31517 * 25 23 22 48 48 H 1.08994 * 109.51224 * 181.40533 * 25 23 22 49 49 H 1.08996 * 109.50910 * 176.78495 * 26 25 23 50 50 H 1.09004 * 109.50651 * 296.86939 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8582 1.1616 2.4117 7 7 2.5957 -0.6536 3.4577 8 6 2.7361 0.0774 4.7196 9 6 3.2592 -0.8692 5.8019 10 6 4.6211 -1.4237 5.3795 11 6 2.2737 -2.0246 5.9886 12 6 3.4041 -0.1171 7.0997 13 1 3.1788 0.9384 7.1403 14 6 3.8244 -0.7764 8.2354 15 7 4.1533 -2.0483 8.1735 16 14 3.9266 0.1368 9.8616 17 1 2.5955 0.1261 10.5200 18 1 4.3459 1.5400 9.6160 19 1 4.9196 -0.5296 10.7420 20 6 2.0401 -0.7213 -1.2492 21 1 3.1263 -0.7999 -1.2061 22 6 1.6337 0.0676 -2.4968 23 7 2.0588 -0.6689 -3.6960 24 6 1.7376 0.0825 -4.9167 25 6 1.4531 -2.0081 -3.7269 26 6 1.8613 -2.7762 -2.4670 27 8 1.4686 -2.0308 -1.3112 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 2.2490 -1.6318 1.1527 32 1 2.8258 -1.5949 3.4144 33 1 1.7657 0.4721 5.0207 34 1 3.4378 0.9007 4.5864 35 1 4.9936 -2.0984 6.1504 36 1 4.5168 -1.9676 4.4407 37 1 5.3232 -0.6006 5.2465 38 1 1.3359 -1.6408 6.3904 39 1 2.0883 -2.5031 5.0271 40 1 2.6949 -2.7528 6.6817 41 1 4.4493 -2.5121 8.9724 42 1 0.5510 0.1930 -2.5115 43 1 2.1133 1.0463 -2.4808 44 1 2.2504 1.0440 -4.8970 45 1 2.0624 -0.4851 -5.7887 46 1 0.6612 0.2458 -4.9701 47 1 0.3675 -1.9159 -3.7613 48 1 1.8008 -2.5446 -4.6097 49 1 1.3687 -3.7484 -2.4578 50 1 2.9423 -2.9158 -2.4601 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590930862.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:35 Heat of formation + Delta-G solvation = -95.455939 kcal Electronic energy + Delta-G solvation = -27246.047932 eV Core-core repulsion = 23500.428814 eV Total energy + Delta-G solvation = -3745.619117 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.35396 -40.51326 -38.30909 -36.96615 -36.14796 -34.97038 -33.24950 -32.18913 -30.40144 -29.21707 -27.54255 -27.43600 -26.76337 -25.70519 -25.06417 -22.81311 -21.69043 -21.11506 -20.54490 -19.56005 -17.77541 -17.75042 -17.28540 -16.89089 -16.58889 -16.40773 -16.20711 -15.99063 -15.82107 -15.25852 -15.09211 -14.78117 -14.68465 -14.60837 -14.03596 -13.89774 -13.83698 -13.33996 -13.20007 -13.06929 -12.94419 -12.80405 -12.68892 -12.58238 -12.51781 -12.27154 -12.21224 -12.12821 -11.86050 -11.57744 -11.45601 -11.32118 -11.10542 -10.68097 -10.63893 -10.39356 -10.26242 -9.64722 -9.40303 -8.00722 -6.15409 1.44231 1.46399 1.54241 1.78900 2.23462 2.47664 2.69654 2.84054 3.23202 3.41667 3.71999 3.86590 3.99601 4.02968 4.16529 4.28164 4.37309 4.42453 4.45986 4.56612 4.58761 4.63046 4.65472 4.73166 4.75327 4.80046 4.87802 4.96294 4.99577 5.01434 5.05366 5.08434 5.13692 5.22427 5.33616 5.41206 5.58285 5.66632 5.69558 5.70001 5.89435 5.95912 6.10371 6.16282 6.18115 6.23913 6.45351 6.88771 7.19460 7.51822 7.67584 8.98804 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.034112 B = 0.002395 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.617613 B =11686.386430 C =12025.044641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.172 3.828 3 H 0.087 0.913 4 N -0.728 5.728 5 C 0.699 3.301 6 O -0.639 6.639 7 N -0.727 5.727 8 C 0.169 3.831 9 C 0.052 3.948 10 C -0.119 4.119 11 C -0.117 4.117 12 C -0.528 4.528 13 H 0.045 0.955 14 C 0.028 3.972 15 N -0.899 5.899 16 Si 0.945 3.055 17 H -0.279 1.279 18 H -0.276 1.276 19 H -0.283 1.283 20 C 0.098 3.902 21 H 0.071 0.929 22 C 0.027 3.973 23 N -0.554 5.554 24 C 0.024 3.976 25 C 0.017 3.983 26 C 0.059 3.941 27 O -0.388 6.388 28 H 0.037 0.963 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.409 0.591 32 H 0.404 0.596 33 H 0.034 0.966 34 H 0.035 0.965 35 H 0.061 0.939 36 H 0.036 0.964 37 H 0.018 0.982 38 H 0.016 0.984 39 H 0.036 0.964 40 H 0.061 0.939 41 H 0.260 0.740 42 H 0.051 0.949 43 H 0.093 0.907 44 H 0.074 0.926 45 H 0.081 0.919 46 H 0.029 0.971 47 H 0.040 0.960 48 H 0.102 0.898 49 H 0.116 0.884 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.879 -3.050 -26.567 27.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.066 3.934 3 H 0.105 0.895 4 N -0.384 5.384 5 C 0.398 3.602 6 O -0.521 6.521 7 N -0.382 5.382 8 C 0.044 3.956 9 C 0.051 3.949 10 C -0.177 4.177 11 C -0.175 4.175 12 C -0.567 4.567 13 H 0.063 0.937 14 C -0.172 4.172 15 N -0.538 5.538 16 Si 0.772 3.228 17 H -0.205 1.205 18 H -0.201 1.201 19 H -0.209 1.209 20 C 0.039 3.961 21 H 0.089 0.911 22 C -0.101 4.101 23 N -0.279 5.279 24 C -0.123 4.123 25 C -0.111 4.111 26 C -0.018 4.018 27 O -0.307 6.307 28 H 0.056 0.944 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.245 0.755 32 H 0.241 0.759 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.080 0.920 36 H 0.055 0.945 37 H 0.037 0.963 38 H 0.036 0.964 39 H 0.055 0.945 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.111 0.889 44 H 0.093 0.907 45 H 0.100 0.900 46 H 0.047 0.953 47 H 0.059 0.941 48 H 0.120 0.880 49 H 0.134 0.866 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.678 -2.264 -26.234 26.744 hybrid contribution -0.432 -0.006 0.969 1.061 sum -5.110 -2.270 -25.265 25.876 Atomic orbital electron populations 1.22066 0.94728 1.02522 1.01706 1.20776 0.94841 0.95983 0.81752 0.89503 1.44970 1.71349 1.14146 1.07899 1.16163 0.78179 0.84714 0.81106 1.90847 1.59450 1.16392 1.85450 1.45217 1.69874 1.14251 1.08869 1.21099 0.98405 0.94304 0.81768 1.18359 0.92835 0.92386 0.91318 1.21661 0.97752 0.99427 0.98826 1.21643 0.97404 0.99428 0.99053 1.21257 1.45473 0.95292 0.94642 0.93707 1.25463 0.94789 0.95697 1.01281 1.69926 1.45058 1.09716 1.29106 0.85769 0.77692 0.78844 0.80466 1.20483 1.20092 1.20852 1.22232 0.97509 0.83480 0.92870 0.91144 1.22743 0.99735 0.98051 0.89613 1.62195 1.59279 1.03566 1.02818 1.22429 0.99263 0.99099 0.91537 1.22855 0.97620 0.90313 1.00268 1.22843 1.00577 0.94984 0.83348 1.87995 1.71661 1.26547 1.44536 0.94406 0.90278 0.91649 0.75522 0.75917 0.94725 0.94613 0.91981 0.94539 0.96294 0.96440 0.94505 0.92040 0.93068 0.93094 0.88880 0.90750 0.90035 0.95254 0.94141 0.87992 0.86570 0.92173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 9.04 71.98 0.65 -2.78 16 2 C 0.17 3.98 2.45 44.99 0.11 4.09 16 3 H 0.09 2.26 7.58 -2.39 -0.02 2.24 16 4 N -0.73 -19.36 5.06 -457.80 -2.32 -21.68 16 5 C 0.70 25.08 8.53 179.06 1.53 26.60 16 6 O -0.64 -28.11 16.01 -3.99 -0.06 -28.18 16 7 N -0.73 -26.25 4.91 -478.52 -2.35 -28.60 16 8 C 0.17 7.43 4.50 86.38 0.39 7.82 16 9 C 0.05 2.44 0.50 -52.93 -0.03 2.41 16 10 C -0.12 -5.36 8.09 71.98 0.58 -4.77 16 11 C -0.12 -5.32 8.04 71.98 0.58 -4.74 16 12 C -0.53 -28.34 8.01 25.60 0.21 -28.13 16 13 H 0.04 2.46 7.75 -2.91 -0.02 2.43 16 14 C 0.03 1.46 5.14 84.66 0.44 1.90 16 15 N -0.90 -48.44 9.43 21.45 0.20 -48.24 16 16 Si 0.95 43.11 29.54 68.60 2.03 45.13 16 17 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 18 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 19 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 20 C 0.10 1.78 2.63 30.63 0.08 1.86 16 21 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 22 C 0.03 0.42 4.77 86.31 0.41 0.83 16 23 N -0.55 -7.70 4.99 -921.47 -4.59 -12.29 16 24 C 0.02 0.25 9.60 127.69 1.23 1.48 16 25 C 0.02 0.20 5.66 86.32 0.49 0.69 16 26 C 0.06 0.76 7.01 72.02 0.50 1.26 16 27 O -0.39 -7.00 9.33 -148.98 -1.39 -8.39 16 28 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.08 1.44 6.50 -2.38 -0.02 1.42 16 30 H 0.06 1.47 7.56 -2.39 -0.02 1.45 16 31 H 0.41 9.16 8.40 -92.71 -0.78 8.38 16 32 H 0.40 12.75 6.17 -92.71 -0.57 12.17 16 33 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.06 3.10 6.12 -2.39 -0.01 3.08 16 36 H 0.04 1.38 6.86 -2.39 -0.02 1.36 16 37 H 0.02 0.83 8.14 -2.39 -0.02 0.82 16 38 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 39 H 0.04 1.40 6.71 -2.39 -0.02 1.38 16 40 H 0.06 3.05 6.22 -2.39 -0.01 3.04 16 41 H 0.26 13.48 8.31 -92.71 -0.77 12.71 16 42 H 0.05 0.79 6.43 -2.39 -0.02 0.77 16 43 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 46 H 0.03 0.29 8.14 -2.39 -0.02 0.27 16 47 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 48 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 50 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -63.87 383.16 -1.75 -65.61 By element: Atomic # 1 Polarization: 28.54 SS G_CDS: -0.42 Total: 28.12 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: 7.17 Total: 8.51 kcal Atomic # 7 Polarization: -101.75 SS G_CDS: -9.06 Total: -110.81 kcal Atomic # 8 Polarization: -35.11 SS G_CDS: -1.45 Total: -36.57 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Total: -63.87 -1.75 -65.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590930862.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.841 kcal (2) G-P(sol) polarization free energy of solvation -63.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds