Wall clock time and date at job start Fri Apr 10 2020 18:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42903 * 114.00242 * 2 1 4 4 C 1.53001 * 109.47329 * 179.97438 * 3 2 1 5 5 N 1.46901 * 109.47181 * 63.89061 * 4 3 2 6 6 C 1.46892 * 111.00391 * 199.57383 * 5 4 3 7 7 C 1.46903 * 110.99609 * 75.61847 * 5 4 3 8 8 C 1.53006 * 109.47250 * 189.99926 * 7 5 4 9 9 N 1.46495 * 109.47330 * 180.02562 * 8 7 5 10 10 C 1.46765 * 124.35020 * 89.99663 * 9 8 7 11 11 C 1.54477 * 105.47604 * 196.99570 * 10 9 8 12 12 H 1.09001 * 110.96880 * 92.74295 * 11 10 9 13 13 N 1.46495 * 110.97255 * 216.46897 * 11 10 9 14 14 C 1.34777 * 120.00290 * 205.00311 * 13 11 10 15 15 O 1.21689 * 119.99960 * 359.97438 * 14 13 11 16 16 C 1.46376 * 120.00154 * 179.97438 * 14 13 11 17 17 H 1.07995 * 120.00125 * 352.91673 * 16 14 13 18 18 C 1.40049 * 119.99847 * 173.18657 * 16 14 13 19 19 N 1.30672 * 119.99863 * 6.94131 * 18 16 14 20 20 Si 1.86805 * 119.99817 * 186.93919 * 18 16 14 21 21 H 1.48500 * 109.47049 * 94.94482 * 20 18 16 22 22 H 1.48500 * 109.46708 * 214.94254 * 20 18 16 23 23 H 1.48501 * 109.47276 * 334.94243 * 20 18 16 24 24 C 1.54633 * 101.76434 * 334.59028 * 11 10 9 25 25 C 1.34421 * 124.35109 * 269.97990 * 9 8 7 26 26 O 1.21282 * 124.94102 * 359.60916 * 25 9 8 27 27 H 1.08999 * 109.47038 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47143 * 300.00766 * 1 2 3 29 29 H 1.09007 * 109.46871 * 60.00468 * 1 2 3 30 30 H 1.09000 * 109.46954 * 59.99883 * 3 2 1 31 31 H 1.09001 * 109.46995 * 299.99435 * 3 2 1 32 32 H 1.09003 * 109.47239 * 303.89439 * 4 3 2 33 33 H 1.08995 * 109.47379 * 183.89264 * 4 3 2 34 34 H 1.09008 * 109.47137 * 290.00320 * 6 5 4 35 35 H 1.09004 * 109.47475 * 49.99606 * 6 5 4 36 36 H 1.08995 * 109.47523 * 169.99988 * 6 5 4 37 37 H 1.09004 * 109.46879 * 70.00444 * 7 5 4 38 38 H 1.08994 * 109.47682 * 310.00226 * 7 5 4 39 39 H 1.08994 * 109.46666 * 60.00289 * 8 7 5 40 40 H 1.08999 * 109.46672 * 300.00378 * 8 7 5 41 41 H 1.09006 * 110.24032 * 77.99488 * 10 9 8 42 42 H 1.08996 * 110.25027 * 316.00121 * 10 9 8 43 43 H 0.97003 * 119.99853 * 24.99744 * 13 11 10 44 44 H 0.97002 * 119.99322 * 179.97438 * 19 18 16 45 45 H 1.08995 * 110.48555 * 143.48015 * 24 11 10 46 46 H 1.09001 * 110.48116 * 266.11459 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9760 0.5381 -1.2427 6 6 5.3304 -0.0120 -1.0989 7 6 3.9042 1.4711 -2.3752 8 6 4.1270 0.7060 -3.6813 9 7 4.0561 1.6365 -4.8106 10 6 5.2082 2.3599 -5.3611 11 6 4.6097 3.5074 -6.2047 12 1 4.5135 4.4175 -5.6127 13 7 5.4126 3.7490 -7.4059 14 6 5.3951 4.9607 -7.9958 15 8 4.7119 5.8539 -7.5309 16 6 6.1978 5.2022 -9.1958 17 1 6.8903 4.4496 -9.5428 18 6 6.0719 6.4116 -9.8907 19 7 5.3424 7.3764 -9.3962 20 14 6.9469 6.6455 -11.5245 21 1 6.0172 6.3181 -12.6352 22 1 7.3910 8.0569 -11.6505 23 1 8.1280 5.7474 -11.5865 24 6 3.2206 2.9365 -6.5730 25 6 2.9274 1.9371 -5.4759 26 8 1.8331 1.4745 -5.2320 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.6886 1.8464 0.8900 31 1 1.6887 1.8463 -0.8900 32 1 3.8521 0.5848 0.8539 33 1 3.9786 2.1780 0.0704 34 1 6.0495 0.8048 -1.0349 35 1 5.3835 -0.6144 -0.1920 36 1 5.5635 -0.6344 -1.9627 37 1 4.6740 2.2351 -2.2658 38 1 2.9227 1.9445 -2.3943 39 1 3.3573 -0.0579 -3.7906 40 1 5.1087 0.2326 -3.6621 41 1 5.8026 1.6986 -5.9917 42 1 5.8203 2.7641 -4.5549 43 1 5.9570 3.0369 -7.7768 44 1 5.2555 8.2141 -9.8774 45 1 2.4718 3.7284 -6.5780 46 1 3.2575 2.4391 -7.5423 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591589387.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:47 Heat of formation + Delta-G solvation = -104.473474 kcal Electronic energy + Delta-G solvation = -26284.899328 eV Core-core repulsion = 22403.056086 eV Total energy + Delta-G solvation = -3881.843241 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.33166 -38.65292 -37.48416 -37.12893 -35.93723 -33.71267 -32.48992 -31.28396 -30.17404 -28.34793 -27.29928 -26.65085 -26.04470 -25.10967 -23.08061 -21.61453 -20.97239 -19.77680 -19.21983 -17.45084 -16.91433 -16.67977 -16.44232 -16.04797 -15.63342 -15.46921 -15.30178 -14.85137 -14.82896 -14.24959 -14.03362 -13.80417 -13.62962 -13.32913 -13.08274 -12.88560 -12.73961 -12.45347 -12.38380 -12.27522 -12.05979 -11.83052 -11.61495 -11.34856 -11.31862 -11.17260 -10.99687 -10.90479 -10.72734 -10.54326 -10.28852 -9.79875 -9.64463 -8.92286 -8.74276 -8.51187 -7.76114 -7.70661 -6.28677 -4.73129 2.76024 2.95875 3.09605 3.17345 3.20244 3.60886 3.77851 4.02744 4.42203 4.46765 4.67519 4.75697 4.78851 4.79569 4.96508 5.00347 5.07298 5.14036 5.20567 5.22489 5.28149 5.30541 5.32011 5.34307 5.43617 5.52501 5.56676 5.58403 5.66288 5.70343 5.78697 5.83515 5.90544 6.30826 6.41610 6.55525 6.73207 6.80743 7.04804 7.20755 7.36159 7.76716 7.92374 8.22246 8.34567 8.94225 9.37457 10.48923 10.66748 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.026693 B = 0.002389 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.719247 B =11716.151283 C =12019.539183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.375 6.375 3 C 0.065 3.935 4 C 0.057 3.943 5 N -0.531 5.531 6 C 0.022 3.978 7 C 0.037 3.963 8 C 0.133 3.867 9 N -0.620 5.620 10 C 0.097 3.903 11 C 0.151 3.849 12 H 0.100 0.900 13 N -0.755 5.755 14 C 0.555 3.445 15 O -0.577 6.577 16 C -0.545 4.545 17 H 0.069 0.931 18 C 0.088 3.912 19 N -0.765 5.765 20 Si 0.908 3.092 21 H -0.272 1.272 22 H -0.279 1.279 23 H -0.265 1.265 24 C -0.168 4.168 25 C 0.522 3.478 26 O -0.537 6.537 27 H 0.084 0.916 28 H 0.036 0.964 29 H 0.041 0.959 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.083 0.917 33 H 0.052 0.948 34 H 0.026 0.974 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.038 0.962 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.383 0.617 44 H 0.269 0.731 45 H 0.102 0.898 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.615 -13.301 16.176 20.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.294 6.294 3 C -0.012 4.012 4 C -0.071 4.071 5 N -0.256 5.256 6 C -0.126 4.126 7 C -0.092 4.092 8 C 0.010 3.990 9 N -0.355 5.355 10 C -0.027 4.027 11 C 0.043 3.957 12 H 0.118 0.882 13 N -0.410 5.410 14 C 0.360 3.640 15 O -0.460 6.460 16 C -0.582 4.582 17 H 0.088 0.912 18 C -0.133 4.133 19 N -0.394 5.394 20 Si 0.733 3.267 21 H -0.198 1.198 22 H -0.205 1.205 23 H -0.189 1.189 24 C -0.210 4.210 25 C 0.311 3.689 26 O -0.414 6.414 27 H 0.102 0.898 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.101 0.899 33 H 0.070 0.930 34 H 0.045 0.955 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.056 0.944 38 H 0.097 0.903 39 H 0.108 0.892 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.216 0.784 44 H 0.080 0.920 45 H 0.121 0.879 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.958 -13.274 16.589 21.336 hybrid contribution 1.076 0.721 -0.794 1.519 sum -0.882 -12.553 15.795 20.195 Atomic orbital electron populations 1.22725 0.81543 1.02609 0.99736 1.87957 1.19032 1.27108 1.95267 1.22554 0.93362 0.85343 0.99975 1.22144 0.94000 0.98213 0.92724 1.61830 1.24662 1.35651 1.03430 1.22467 0.88164 0.99185 1.02783 1.22598 1.01990 0.93944 0.90702 1.21237 1.03011 0.91311 0.83447 1.48279 1.09504 1.45224 1.32507 1.22422 0.88312 0.93998 0.97967 1.21285 0.89037 0.96537 0.88869 0.88200 1.46168 1.50628 1.15631 1.28571 1.18266 0.82360 0.79404 0.84001 1.90614 1.46156 1.43321 1.65896 1.20857 1.24736 1.02424 1.10137 0.91238 1.25709 0.94132 0.95041 0.98377 1.70019 1.30532 1.03140 1.35678 0.86348 0.80057 0.78097 0.82203 1.19753 1.20455 1.18865 1.22924 1.01013 0.98749 0.98285 1.21150 0.83371 0.81600 0.82803 1.90685 1.24467 1.56355 1.69912 0.89769 0.94565 0.94010 0.93192 0.93098 0.89872 0.93013 0.95540 0.91308 0.91037 0.94382 0.90343 0.89189 0.90517 0.90792 0.90382 0.78426 0.91993 0.87941 0.87654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.39 16 2 O -0.38 -4.34 10.63 -35.23 -0.37 -4.71 16 3 C 0.06 0.63 6.12 37.16 0.23 0.86 16 4 C 0.06 0.51 5.39 -3.82 -0.02 0.49 16 5 N -0.53 -5.40 4.63 -242.91 -1.12 -6.53 16 6 C 0.02 0.18 9.22 60.06 0.55 0.73 16 7 C 0.04 0.41 5.11 -3.82 -0.02 0.39 16 8 C 0.13 1.54 5.86 -4.04 -0.02 1.52 16 9 N -0.62 -8.38 2.93 -172.42 -0.51 -8.88 16 10 C 0.10 1.23 7.08 -3.12 -0.02 1.21 16 11 C 0.15 2.57 3.53 -66.30 -0.23 2.34 16 12 H 0.10 1.93 7.54 -51.93 -0.39 1.54 16 13 N -0.75 -14.98 5.15 -53.63 -0.28 -15.26 16 14 C 0.56 14.66 7.74 -12.99 -0.10 14.56 16 15 O -0.58 -17.62 14.69 5.20 0.08 -17.54 16 16 C -0.54 -14.53 9.53 -35.63 -0.34 -14.87 16 17 H 0.07 1.69 7.86 -52.49 -0.41 1.27 16 18 C 0.09 2.35 5.49 -17.37 -0.10 2.25 16 19 N -0.77 -22.16 11.86 55.55 0.66 -21.51 16 20 Si 0.91 19.40 29.57 -169.99 -5.03 14.38 16 21 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 22 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 23 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 24 C -0.17 -2.85 6.59 -26.74 -0.18 -3.03 16 25 C 0.52 8.69 8.02 -10.86 -0.09 8.60 16 26 O -0.54 -10.61 17.59 5.56 0.10 -10.51 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.04 0.39 8.14 -51.92 -0.42 -0.04 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.55 6.68 -51.93 -0.35 0.20 16 32 H 0.08 0.67 7.74 -51.93 -0.40 0.27 16 33 H 0.05 0.41 8.00 -51.93 -0.42 0.00 16 34 H 0.03 0.20 8.06 -51.92 -0.42 -0.22 16 35 H 0.07 0.49 7.83 -51.93 -0.41 0.09 16 36 H 0.07 0.54 6.77 -51.93 -0.35 0.19 16 37 H 0.04 0.41 8.06 -51.93 -0.42 -0.01 16 38 H 0.08 1.02 6.57 -51.93 -0.34 0.68 16 39 H 0.09 1.20 7.92 -51.93 -0.41 0.79 16 40 H 0.08 0.73 6.69 -51.93 -0.35 0.38 16 41 H 0.07 0.83 7.80 -51.93 -0.40 0.43 16 42 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.38 6.52 8.41 -40.82 -0.34 6.18 16 44 H 0.27 7.09 8.29 -40.82 -0.34 6.75 16 45 H 0.10 1.88 8.14 -51.93 -0.42 1.46 16 46 H 0.11 1.77 8.08 -51.93 -0.42 1.35 16 LS Contribution 380.20 15.07 5.73 5.73 Total: -1.00 -34.95 380.20 -7.47 -42.42 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -7.50 Total: 5.96 kcal Atomic # 6 Polarization: 15.66 SS G_CDS: 0.78 Total: 16.44 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: -1.25 Total: -52.17 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -0.20 Total: -32.76 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.03 Total: 14.38 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.95 -7.47 -42.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591589387.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.057 kcal (2) G-P(sol) polarization free energy of solvation -34.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds