Wall clock time and date at job start Fri Apr 10 2020 18:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42903 * 114.00242 * 2 1 4 4 C 1.53001 * 109.47329 * 179.97438 * 3 2 1 5 5 N 1.46901 * 109.47181 * 63.89061 * 4 3 2 6 6 C 1.46892 * 111.00391 * 199.57383 * 5 4 3 7 7 C 1.46903 * 110.99609 * 75.61847 * 5 4 3 8 8 C 1.53006 * 109.47250 * 189.99926 * 7 5 4 9 9 N 1.46495 * 109.47330 * 180.02562 * 8 7 5 10 10 C 1.46765 * 124.35020 * 89.99663 * 9 8 7 11 11 C 1.54477 * 105.47604 * 196.99570 * 10 9 8 12 12 H 1.09001 * 110.96880 * 92.74295 * 11 10 9 13 13 N 1.46495 * 110.97255 * 216.46897 * 11 10 9 14 14 C 1.34777 * 120.00290 * 205.00311 * 13 11 10 15 15 O 1.21689 * 119.99960 * 359.97438 * 14 13 11 16 16 C 1.46376 * 120.00154 * 179.97438 * 14 13 11 17 17 H 1.07995 * 120.00125 * 352.91673 * 16 14 13 18 18 C 1.40049 * 119.99847 * 173.18657 * 16 14 13 19 19 N 1.30672 * 119.99863 * 6.94131 * 18 16 14 20 20 Si 1.86805 * 119.99817 * 186.93919 * 18 16 14 21 21 H 1.48500 * 109.47049 * 94.94482 * 20 18 16 22 22 H 1.48500 * 109.46708 * 214.94254 * 20 18 16 23 23 H 1.48501 * 109.47276 * 334.94243 * 20 18 16 24 24 C 1.54633 * 101.76434 * 334.59028 * 11 10 9 25 25 C 1.34421 * 124.35109 * 269.97990 * 9 8 7 26 26 O 1.21282 * 124.94102 * 359.60916 * 25 9 8 27 27 H 1.08999 * 109.47038 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47143 * 300.00766 * 1 2 3 29 29 H 1.09007 * 109.46871 * 60.00468 * 1 2 3 30 30 H 1.09000 * 109.46954 * 59.99883 * 3 2 1 31 31 H 1.09001 * 109.46995 * 299.99435 * 3 2 1 32 32 H 1.09003 * 109.47239 * 303.89439 * 4 3 2 33 33 H 1.08995 * 109.47379 * 183.89264 * 4 3 2 34 34 H 1.09008 * 109.47137 * 290.00320 * 6 5 4 35 35 H 1.09004 * 109.47475 * 49.99606 * 6 5 4 36 36 H 1.08995 * 109.47523 * 169.99988 * 6 5 4 37 37 H 1.09004 * 109.46879 * 70.00444 * 7 5 4 38 38 H 1.08994 * 109.47682 * 310.00226 * 7 5 4 39 39 H 1.08994 * 109.46666 * 60.00289 * 8 7 5 40 40 H 1.08999 * 109.46672 * 300.00378 * 8 7 5 41 41 H 1.09006 * 110.24032 * 77.99488 * 10 9 8 42 42 H 1.08996 * 110.25027 * 316.00121 * 10 9 8 43 43 H 0.97003 * 119.99853 * 24.99744 * 13 11 10 44 44 H 0.97002 * 119.99322 * 179.97438 * 19 18 16 45 45 H 1.08995 * 110.48555 * 143.48015 * 24 11 10 46 46 H 1.09001 * 110.48116 * 266.11459 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9760 0.5381 -1.2427 6 6 5.3304 -0.0120 -1.0989 7 6 3.9042 1.4711 -2.3752 8 6 4.1270 0.7060 -3.6813 9 7 4.0561 1.6365 -4.8106 10 6 5.2082 2.3599 -5.3611 11 6 4.6097 3.5074 -6.2047 12 1 4.5135 4.4175 -5.6127 13 7 5.4126 3.7490 -7.4059 14 6 5.3951 4.9607 -7.9958 15 8 4.7119 5.8539 -7.5309 16 6 6.1978 5.2022 -9.1958 17 1 6.8903 4.4496 -9.5428 18 6 6.0719 6.4116 -9.8907 19 7 5.3424 7.3764 -9.3962 20 14 6.9469 6.6455 -11.5245 21 1 6.0172 6.3181 -12.6352 22 1 7.3910 8.0569 -11.6505 23 1 8.1280 5.7474 -11.5865 24 6 3.2206 2.9365 -6.5730 25 6 2.9274 1.9371 -5.4759 26 8 1.8331 1.4745 -5.2320 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.6886 1.8464 0.8900 31 1 1.6887 1.8463 -0.8900 32 1 3.8521 0.5848 0.8539 33 1 3.9786 2.1780 0.0704 34 1 6.0495 0.8048 -1.0349 35 1 5.3835 -0.6144 -0.1920 36 1 5.5635 -0.6344 -1.9627 37 1 4.6740 2.2351 -2.2658 38 1 2.9227 1.9445 -2.3943 39 1 3.3573 -0.0579 -3.7906 40 1 5.1087 0.2326 -3.6621 41 1 5.8026 1.6986 -5.9917 42 1 5.8203 2.7641 -4.5549 43 1 5.9570 3.0369 -7.7768 44 1 5.2555 8.2141 -9.8774 45 1 2.4718 3.7284 -6.5780 46 1 3.2575 2.4391 -7.5423 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591589387.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:47 Heat of formation + Delta-G solvation = -132.447502 kcal Electronic energy + Delta-G solvation = -26286.112372 eV Core-core repulsion = 22403.056086 eV Total energy + Delta-G solvation = -3883.056286 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.63982 -39.50036 -39.26051 -37.99857 -37.40491 -35.21875 -34.46551 -32.66142 -31.07859 -29.44412 -28.80863 -27.74703 -27.34343 -25.97571 -23.98338 -23.14154 -21.77325 -21.53301 -20.51220 -19.26352 -18.01489 -17.71102 -17.51695 -17.24383 -17.12258 -16.68193 -16.27845 -15.93522 -15.83993 -15.72038 -15.35523 -15.11864 -14.86851 -14.36649 -14.35199 -14.25200 -14.03015 -13.89397 -13.52409 -13.17707 -13.05763 -12.85925 -12.82864 -12.63597 -12.56663 -12.52219 -12.39062 -12.27271 -12.07169 -11.97915 -11.69094 -11.07557 -10.90144 -10.58053 -9.89575 -9.81244 -9.52112 -9.28106 -8.28531 -6.82055 1.41606 1.43528 1.44360 1.59742 1.82762 2.26213 2.48713 2.86781 2.91097 3.03031 3.42365 3.48818 3.75205 3.89765 3.95053 3.98620 4.05394 4.11898 4.21433 4.34256 4.40194 4.46942 4.50205 4.54479 4.56248 4.57867 4.63991 4.65859 4.82233 4.84703 4.86640 4.87152 4.92039 4.97516 5.10290 5.36413 5.46820 5.90284 5.93900 5.97626 6.10054 6.20714 6.28727 6.30362 6.90415 7.03352 7.55432 8.50790 8.68910 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.026693 B = 0.002389 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.719247 B =11716.151283 C =12019.539183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.398 6.398 3 C 0.062 3.938 4 C 0.057 3.943 5 N -0.546 5.546 6 C 0.022 3.978 7 C 0.045 3.955 8 C 0.134 3.866 9 N -0.607 5.607 10 C 0.111 3.889 11 C 0.149 3.851 12 H 0.073 0.927 13 N -0.738 5.738 14 C 0.543 3.457 15 O -0.629 6.629 16 C -0.570 4.570 17 H 0.092 0.908 18 C 0.029 3.971 19 N -0.821 5.821 20 Si 0.994 3.006 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.246 1.246 24 C -0.164 4.164 25 C 0.524 3.476 26 O -0.573 6.573 27 H 0.094 0.906 28 H 0.053 0.947 29 H 0.031 0.969 30 H 0.069 0.931 31 H 0.032 0.968 32 H 0.094 0.906 33 H 0.062 0.938 34 H 0.035 0.965 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.046 0.954 38 H 0.052 0.948 39 H 0.072 0.928 40 H 0.110 0.890 41 H 0.104 0.896 42 H 0.104 0.896 43 H 0.401 0.599 44 H 0.273 0.727 45 H 0.079 0.921 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.851 -15.021 16.280 22.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.317 6.317 3 C -0.015 4.015 4 C -0.071 4.071 5 N -0.271 5.271 6 C -0.126 4.126 7 C -0.084 4.084 8 C 0.013 3.987 9 N -0.340 5.340 10 C -0.012 4.012 11 C 0.041 3.959 12 H 0.091 0.909 13 N -0.392 5.392 14 C 0.347 3.653 15 O -0.516 6.516 16 C -0.606 4.606 17 H 0.110 0.890 18 C -0.186 4.186 19 N -0.451 5.451 20 Si 0.814 3.186 21 H -0.192 1.192 22 H -0.201 1.201 23 H -0.169 1.169 24 C -0.206 4.206 25 C 0.312 3.688 26 O -0.453 6.453 27 H 0.113 0.887 28 H 0.072 0.928 29 H 0.049 0.951 30 H 0.087 0.913 31 H 0.050 0.950 32 H 0.113 0.887 33 H 0.080 0.920 34 H 0.053 0.947 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.091 0.909 40 H 0.128 0.872 41 H 0.122 0.878 42 H 0.122 0.878 43 H 0.237 0.763 44 H 0.083 0.917 45 H 0.097 0.903 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.559 -15.068 16.728 22.521 hybrid contribution 0.276 1.207 -0.736 1.440 sum 0.836 -13.861 15.993 21.180 Atomic orbital electron populations 1.22840 0.80567 1.03453 1.00062 1.87911 1.20286 1.28147 1.95378 1.22653 0.94117 0.84787 0.99950 1.22199 0.93326 0.98965 0.92569 1.61815 1.26275 1.35537 1.03493 1.22527 0.86998 0.99512 1.03547 1.22420 1.00775 0.94170 0.91062 1.21379 1.04220 0.90460 0.82668 1.48270 1.08646 1.44773 1.32356 1.22406 0.87733 0.92617 0.98433 1.21274 0.89181 0.97332 0.88091 0.90876 1.45678 1.50410 1.14238 1.28893 1.18559 0.81902 0.80521 0.84304 1.90579 1.48085 1.45597 1.67309 1.21422 1.25338 1.03358 1.10495 0.88993 1.26931 0.94567 0.94392 1.02695 1.70187 1.32775 1.04081 1.38031 0.85050 0.79056 0.78316 0.76157 1.19190 1.20139 1.16860 1.22799 1.00443 0.98384 0.99002 1.20956 0.83646 0.81324 0.82872 1.90667 1.25989 1.57726 1.70941 0.88749 0.92833 0.95055 0.91344 0.94966 0.88736 0.91982 0.94691 0.90449 0.90452 0.93571 0.92970 0.90945 0.87180 0.87783 0.87790 0.76320 0.91667 0.90288 0.87314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 113.37 1.25 1.73 16 2 O -0.40 -9.04 10.63 -148.98 -1.58 -10.63 16 3 C 0.06 1.18 6.12 71.98 0.44 1.62 16 4 C 0.06 0.94 5.39 86.30 0.47 1.41 16 5 N -0.55 -10.20 4.63 -922.45 -4.27 -14.47 16 6 C 0.02 0.28 9.22 127.69 1.18 1.46 16 7 C 0.04 0.94 5.11 86.30 0.44 1.38 16 8 C 0.13 2.85 5.86 86.38 0.51 3.35 16 9 N -0.61 -15.39 2.93 -818.00 -2.40 -17.79 16 10 C 0.11 2.51 7.08 86.83 0.61 3.12 16 11 C 0.15 5.03 3.53 46.05 0.16 5.19 16 12 H 0.07 2.91 7.54 -2.39 -0.02 2.89 16 13 N -0.74 -28.72 5.15 -441.81 -2.27 -30.99 16 14 C 0.54 29.04 7.74 86.36 0.67 29.71 16 15 O -0.63 -39.84 14.69 -4.31 -0.06 -39.91 16 16 C -0.57 -30.17 9.53 24.83 0.24 -29.94 16 17 H 0.09 4.29 7.86 -2.91 -0.02 4.27 16 18 C 0.03 1.57 5.49 85.30 0.47 2.04 16 19 N -0.82 -48.77 11.86 21.84 0.26 -48.51 16 20 Si 0.99 39.30 29.57 68.60 2.03 41.33 16 21 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 22 H -0.28 -10.68 7.11 99.48 0.71 -9.97 16 23 H -0.25 -8.86 7.11 99.48 0.71 -8.16 16 24 C -0.16 -5.71 6.59 30.59 0.20 -5.51 16 25 C 0.52 17.50 8.02 87.90 0.71 18.20 16 26 O -0.57 -23.22 17.59 -3.04 -0.05 -23.28 16 27 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.03 0.60 8.14 -2.38 -0.02 0.58 16 30 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.03 0.72 6.68 -2.39 -0.02 0.71 16 32 H 0.09 1.34 7.74 -2.39 -0.02 1.32 16 33 H 0.06 0.89 8.00 -2.39 -0.02 0.87 16 34 H 0.03 0.41 8.06 -2.38 -0.02 0.39 16 35 H 0.08 0.89 7.83 -2.38 -0.02 0.88 16 36 H 0.08 0.91 6.77 -2.39 -0.02 0.90 16 37 H 0.05 0.89 8.06 -2.38 -0.02 0.87 16 38 H 0.05 1.38 6.57 -2.39 -0.02 1.36 16 39 H 0.07 1.86 7.92 -2.39 -0.02 1.84 16 40 H 0.11 1.65 6.69 -2.39 -0.02 1.63 16 41 H 0.10 1.86 7.80 -2.38 -0.02 1.84 16 42 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.40 12.75 8.41 -92.71 -0.78 11.97 16 44 H 0.27 14.78 8.29 -92.71 -0.77 14.02 16 45 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 46 H 0.11 3.67 8.08 -2.39 -0.02 3.65 16 Total: -1.00 -79.23 380.20 -0.82 -80.05 By element: Atomic # 1 Polarization: 30.23 SS G_CDS: 0.20 Total: 30.43 kcal Atomic # 6 Polarization: 26.43 SS G_CDS: 7.34 Total: 33.77 kcal Atomic # 7 Polarization: -103.08 SS G_CDS: -8.68 Total: -111.76 kcal Atomic # 8 Polarization: -72.11 SS G_CDS: -1.70 Total: -73.81 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 2.03 Total: 41.33 kcal Total: -79.23 -0.82 -80.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591589387.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.400 kcal (2) G-P(sol) polarization free energy of solvation -79.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds