Wall clock time and date at job start Fri Apr 10 2020 18:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47340 * 2 1 4 4 C 1.52995 * 109.47318 * 240.00108 * 2 1 3 5 5 N 1.46899 * 109.47529 * 185.00158 * 4 2 1 6 6 C 1.46848 * 111.00025 * 294.20955 * 5 4 2 7 7 C 1.53037 * 109.52421 * 174.15740 * 6 5 4 8 8 C 1.53122 * 109.27664 * 59.18170 * 7 6 5 9 9 C 1.53118 * 109.15590 * 302.34247 * 8 7 6 10 10 C 1.46847 * 111.00482 * 169.99563 * 5 4 2 11 11 N 1.46904 * 109.47162 * 119.99839 * 2 1 3 12 12 C 1.46896 * 111.00016 * 274.99941 * 11 2 1 13 13 C 1.53002 * 109.47181 * 179.97438 * 12 11 2 14 14 H 1.09002 * 109.47070 * 305.00230 * 13 12 11 15 15 O 1.42903 * 109.46923 * 65.00394 * 13 12 11 16 16 C 1.53000 * 109.47233 * 184.99855 * 13 12 11 17 17 N 1.46905 * 109.47123 * 180.02562 * 16 13 12 18 18 C 1.46898 * 110.99713 * 293.95674 * 17 16 13 19 19 C 1.46891 * 110.99898 * 170.00473 * 17 16 13 20 20 C 1.50706 * 109.47049 * 190.00167 * 19 17 16 21 21 H 1.07995 * 119.99965 * 359.97438 * 20 19 17 22 22 C 1.37878 * 119.99874 * 179.97438 * 20 19 17 23 23 N 1.31511 * 120.00404 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99825 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47128 * 89.99822 * 24 22 20 26 26 H 1.48495 * 109.47223 * 210.00078 * 24 22 20 27 27 H 1.48500 * 109.46931 * 330.00271 * 24 22 20 28 28 H 1.08997 * 109.47203 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46757 * 300.00342 * 1 2 3 30 30 H 1.08998 * 109.47082 * 59.99705 * 1 2 3 31 31 H 1.09003 * 109.46869 * 305.00234 * 4 2 1 32 32 H 1.09000 * 109.47397 * 64.99774 * 4 2 1 33 33 H 1.08996 * 109.45968 * 294.17449 * 6 5 4 34 34 H 1.09000 * 109.46059 * 54.13817 * 6 5 4 35 35 H 1.08998 * 109.50610 * 299.23722 * 7 6 5 36 36 H 1.09007 * 109.50150 * 179.12048 * 7 6 5 37 37 H 1.08998 * 109.51911 * 182.43884 * 8 7 6 38 38 H 1.08999 * 109.52016 * 62.25022 * 8 7 6 39 39 H 1.08996 * 109.50333 * 297.70871 * 9 8 7 40 40 H 1.09005 * 109.49954 * 177.59794 * 9 8 7 41 41 H 1.08994 * 109.46133 * 305.85815 * 10 5 4 42 42 H 1.09002 * 109.45670 * 65.82401 * 10 5 4 43 43 H 1.00896 * 110.99668 * 38.95399 * 11 2 1 44 44 H 1.09008 * 109.47165 * 59.99956 * 12 11 2 45 45 H 1.08997 * 109.47437 * 299.99850 * 12 11 2 46 46 H 0.96700 * 114.00234 * 59.99815 * 15 13 12 47 47 H 1.08992 * 109.47399 * 300.00166 * 16 13 12 48 48 H 1.09004 * 109.46724 * 60.00652 * 16 13 12 49 49 H 1.09002 * 109.47298 * 60.00428 * 18 17 16 50 50 H 1.09011 * 109.46893 * 179.97438 * 18 17 16 51 51 H 1.08994 * 109.47518 * 299.99556 * 18 17 16 52 52 H 1.09008 * 109.47131 * 309.99933 * 19 17 16 53 53 H 1.08997 * 109.47884 * 70.00206 * 19 17 16 54 54 H 0.96997 * 120.00581 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5040 -0.8267 -1.1904 6 6 4.1306 0.4993 -1.2658 7 6 5.6405 0.3641 -1.0559 8 6 6.2202 -0.5569 -2.1331 9 6 5.5168 -1.9153 -2.0644 10 6 4.0106 -1.7141 -2.2450 11 7 2.0197 -0.6925 1.1995 12 6 2.0825 0.2226 2.3469 13 6 2.5951 -0.5331 3.5745 14 1 1.9691 -1.4080 3.7501 15 8 3.9433 -0.9495 3.3489 16 6 2.5428 0.3851 4.7972 17 7 3.0356 -0.3404 5.9758 18 6 2.1337 -1.4447 6.3292 19 6 3.2242 0.5698 7.1133 20 6 3.9550 -0.1505 8.2171 21 1 4.2493 -1.1814 8.0868 22 6 4.2477 0.5066 9.3933 23 7 3.8897 1.7621 9.5519 24 14 5.1528 -0.3864 10.7618 25 1 6.6164 -0.2063 10.5870 26 1 4.7388 0.1704 12.0747 27 1 4.8227 -1.8334 10.7115 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.6053 -1.7198 -1.2951 32 1 1.7517 -0.1583 -2.1370 33 1 3.9378 0.9368 -2.2453 34 1 3.7125 1.1430 -0.4920 35 1 5.8345 -0.0606 -0.0710 36 1 6.1072 1.3466 -1.1275 37 1 7.2882 -0.6906 -1.9617 38 1 6.0607 -0.1133 -3.1159 39 1 5.7089 -2.3759 -1.0954 40 1 5.8952 -2.5614 -2.8565 41 1 3.5054 -2.6779 -2.1824 42 1 3.8184 -1.2661 -3.2199 43 1 1.4496 -1.4979 1.4100 44 1 1.0870 0.6164 2.5525 45 1 2.7589 1.0462 2.1182 46 1 4.5578 -0.2210 3.1851 47 1 3.1687 1.2599 4.6217 48 1 1.5144 0.7027 4.9694 49 1 2.0667 -2.1409 5.4931 50 1 2.5223 -1.9652 7.2046 51 1 1.1433 -1.0480 6.5520 52 1 3.8078 1.4336 6.7945 53 1 2.2523 0.9024 7.4777 54 1 4.0953 2.2243 10.3795 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591726072.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:54 Heat of formation + Delta-G solvation = -74.553861 kcal Electronic energy + Delta-G solvation = -27421.007904 eV Core-core repulsion = 23812.128264 eV Total energy + Delta-G solvation = -3608.879641 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 313.247 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.13863 -39.40630 -37.76126 -36.65089 -34.59873 -34.12001 -32.05796 -31.62118 -30.17031 -28.84214 -27.30823 -27.02879 -25.04465 -24.14210 -23.65768 -22.66029 -21.87416 -21.12853 -20.47952 -18.55864 -17.53267 -17.00779 -16.95177 -16.67049 -16.33938 -15.94419 -15.65019 -15.61550 -15.49738 -15.18935 -14.89229 -14.73146 -14.39739 -14.23338 -14.04041 -13.86408 -13.68141 -13.38524 -13.18782 -13.10728 -12.89573 -12.72514 -12.62948 -12.52799 -12.52412 -12.38730 -12.29274 -12.02653 -11.97192 -11.81886 -11.57995 -11.52898 -11.36865 -11.17244 -11.03907 -10.61506 -10.55674 -9.04998 -8.95573 -8.93376 -8.20517 -6.30362 1.41152 1.43020 1.54108 2.40678 2.95530 3.10303 3.12437 3.51130 3.79917 3.89288 3.98689 3.99369 4.08617 4.13978 4.18637 4.32804 4.34261 4.38061 4.42652 4.47794 4.56834 4.57268 4.61799 4.69570 4.70328 4.73472 4.75902 4.78011 4.82252 4.91875 4.93216 5.01033 5.07573 5.08483 5.13727 5.15088 5.17006 5.22961 5.26379 5.32225 5.33146 5.39039 5.56977 5.65331 6.05251 6.18768 6.33963 6.37861 6.38496 6.63127 6.66338 6.86014 7.10573 7.39405 8.90573 Molecular weight = 313.25amu Principal moments of inertia in cm(-1) A = 0.017584 B = 0.002546 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.001733 B =10995.223356 C =11887.326559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.090 3.910 3 H 0.069 0.931 4 C 0.073 3.927 5 N -0.526 5.526 6 C 0.064 3.936 7 C -0.116 4.116 8 C -0.118 4.118 9 C -0.114 4.114 10 C 0.058 3.942 11 N -0.657 5.657 12 C 0.045 3.955 13 C 0.134 3.866 14 H 0.088 0.912 15 O -0.550 6.550 16 C 0.025 3.975 17 N -0.538 5.538 18 C 0.042 3.958 19 C 0.208 3.792 20 C -0.523 4.523 21 H 0.061 0.939 22 C 0.001 3.999 23 N -0.935 5.935 24 Si 0.969 3.031 25 H -0.273 1.273 26 H -0.281 1.281 27 H -0.265 1.265 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.037 0.963 33 H 0.025 0.975 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.056 0.944 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.029 0.971 43 H 0.338 0.662 44 H 0.037 0.963 45 H 0.071 0.929 46 H 0.375 0.625 47 H 0.065 0.935 48 H 0.029 0.971 49 H 0.075 0.925 50 H 0.054 0.946 51 H 0.010 0.990 52 H 0.003 0.997 53 H -0.040 1.040 54 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.118 -3.872 -27.590 28.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.020 4.020 3 H 0.087 0.913 4 C -0.056 4.056 5 N -0.250 5.250 6 C -0.064 4.064 7 C -0.154 4.154 8 C -0.155 4.155 9 C -0.152 4.152 10 C -0.070 4.070 11 N -0.287 5.287 12 C -0.086 4.086 13 C 0.073 3.927 14 H 0.105 0.895 15 O -0.354 6.354 16 C -0.105 4.105 17 N -0.262 5.262 18 C -0.106 4.106 19 C 0.081 3.919 20 C -0.561 4.561 21 H 0.079 0.921 22 C -0.197 4.197 23 N -0.576 5.576 24 Si 0.794 3.206 25 H -0.198 1.198 26 H -0.206 1.206 27 H -0.189 1.189 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.055 0.945 33 H 0.044 0.956 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.047 0.953 43 H 0.157 0.843 44 H 0.055 0.945 45 H 0.090 0.910 46 H 0.222 0.778 47 H 0.083 0.917 48 H 0.047 0.953 49 H 0.094 0.906 50 H 0.072 0.928 51 H 0.029 0.971 52 H 0.021 0.979 53 H -0.022 1.022 54 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.124 -4.654 -27.218 27.789 hybrid contribution -1.436 1.484 0.700 2.180 sum -4.560 -3.170 -26.518 27.093 Atomic orbital electron populations 1.22435 0.96206 1.02648 1.02433 1.21569 0.92558 0.97377 0.90523 0.91312 1.22057 0.87624 1.00515 0.95399 1.61738 1.04978 1.11321 1.46956 1.21986 0.95061 0.90320 0.98988 1.21544 0.94647 0.99698 0.99464 1.21549 0.99738 0.95613 0.98637 1.21544 0.94320 0.97359 1.01988 1.22068 0.96032 0.96984 0.91912 1.60299 1.57509 1.08555 1.02336 1.22466 0.99576 0.95625 0.90890 1.21669 0.84569 0.96205 0.90215 0.89458 1.86560 1.18064 1.37211 1.93579 1.22845 0.97939 0.97241 0.92432 1.61923 1.47306 1.11681 1.05315 1.22206 0.92957 0.94428 1.01047 1.19391 0.93156 0.91258 0.88046 1.21475 1.36368 0.98729 0.99558 0.92116 1.25912 0.96860 0.95706 1.01188 1.70077 1.48460 1.11651 1.27425 0.85383 0.78731 0.78833 0.77685 1.19812 1.20621 1.18934 0.91780 0.92966 0.91274 0.90817 0.94496 0.95643 0.91548 0.92417 0.91313 0.91677 0.92031 0.92504 0.90696 0.90971 0.95286 0.84331 0.94537 0.91046 0.77831 0.91667 0.95292 0.90605 0.92758 0.97146 0.97876 1.02241 0.92667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.33 9.16 71.98 0.66 -1.67 16 2 C 0.09 1.44 2.37 44.91 0.11 1.55 16 3 H 0.07 1.19 6.32 -2.38 -0.02 1.18 16 4 C 0.07 1.13 4.65 86.30 0.40 1.53 16 5 N -0.53 -9.60 4.38 -896.40 -3.93 -13.52 16 6 C 0.06 1.14 5.29 86.33 0.46 1.59 16 7 C -0.12 -2.04 6.09 30.65 0.19 -1.85 16 8 C -0.12 -1.82 6.00 30.67 0.18 -1.63 16 9 C -0.11 -1.83 6.09 30.64 0.19 -1.65 16 10 C 0.06 0.94 5.46 86.32 0.47 1.41 16 11 N -0.66 -12.99 5.92 -491.57 -2.91 -15.90 16 12 C 0.04 0.98 5.12 86.30 0.44 1.42 16 13 C 0.13 3.77 3.02 30.60 0.09 3.87 16 14 H 0.09 2.51 6.55 -2.39 -0.02 2.49 16 15 O -0.55 -17.71 13.15 -148.98 -1.96 -19.67 16 16 C 0.02 0.87 4.62 86.30 0.40 1.27 16 17 N -0.54 -24.00 4.62 -927.04 -4.28 -28.28 16 18 C 0.04 1.69 9.14 127.69 1.17 2.86 16 19 C 0.21 11.40 4.72 85.56 0.40 11.80 16 20 C -0.52 -30.57 8.46 25.60 0.22 -30.35 16 21 H 0.06 3.52 7.12 -2.91 -0.02 3.50 16 22 C 0.00 0.07 5.46 84.66 0.46 0.53 16 23 N -0.94 -57.19 13.29 21.45 0.28 -56.90 16 24 Si 0.97 45.23 29.54 68.60 2.03 47.26 16 25 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 26 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 27 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 28 H 0.06 0.79 8.13 -2.39 -0.02 0.77 16 29 H 0.05 0.75 7.45 -2.39 -0.02 0.74 16 30 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 1.12 7.99 -2.39 -0.02 1.10 16 32 H 0.04 0.52 8.12 -2.39 -0.02 0.50 16 33 H 0.03 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.07 1.26 6.32 -2.39 -0.02 1.24 16 35 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 37 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 41 H 0.07 1.14 8.01 -2.39 -0.02 1.12 16 42 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 43 H 0.34 6.59 8.47 -89.70 -0.76 5.83 16 44 H 0.04 0.76 7.44 -2.38 -0.02 0.74 16 45 H 0.07 1.58 8.05 -2.39 -0.02 1.56 16 46 H 0.37 10.59 9.05 -74.06 -0.67 9.92 16 47 H 0.06 2.32 7.93 -2.39 -0.02 2.30 16 48 H 0.03 1.00 8.12 -2.39 -0.02 0.98 16 49 H 0.08 2.60 6.47 -2.39 -0.02 2.59 16 50 H 0.05 2.38 6.76 -2.38 -0.02 2.37 16 51 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 52 H 0.00 0.18 7.93 -2.38 -0.02 0.17 16 53 H -0.04 -2.37 8.12 -2.39 -0.02 -2.39 16 54 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -66.54 411.97 -5.51 -72.06 By element: Atomic # 1 Polarization: 24.88 SS G_CDS: -0.58 Total: 24.30 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: 5.84 Total: -9.33 kcal Atomic # 7 Polarization: -103.78 SS G_CDS: -10.84 Total: -114.62 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -1.96 Total: -19.67 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -66.54 -5.51 -72.06 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591726072.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.498 kcal (2) G-P(sol) polarization free energy of solvation -66.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds