Wall clock time and date at job start Fri Apr 10 2020 18:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 N 1.46895 * 109.47280 * 2 1 4 4 C 1.46904 * 111.00295 * 160.28745 * 3 2 1 5 5 C 1.52994 * 109.47527 * 287.98196 * 4 3 2 6 6 C 1.46897 * 111.00532 * 284.24779 * 3 2 1 7 7 C 1.52994 * 109.47821 * 169.99839 * 6 3 2 8 8 C 1.52998 * 109.47725 * 180.02562 * 7 6 3 9 9 N 1.46500 * 109.47227 * 180.02562 * 8 7 6 10 10 C 1.34780 * 119.99967 * 180.02562 * 9 8 7 11 11 O 1.21593 * 119.99783 * 359.97438 * 10 9 8 12 12 N 1.34770 * 119.99962 * 179.97438 * 10 9 8 13 13 C 1.47423 * 125.65138 * 0.02562 * 12 10 9 14 14 C 1.54912 * 104.83149 * 155.83227 * 13 12 10 15 15 C 1.55159 * 101.57874 * 37.01468 * 14 13 12 16 16 O 1.42902 * 110.72338 * 83.03430 * 15 14 13 17 17 C 1.50700 * 110.71840 * 206.12872 * 15 14 13 18 18 H 1.08003 * 120.00185 * 357.56075 * 17 15 14 19 19 C 1.37881 * 120.00045 * 177.28140 * 17 15 14 20 20 N 1.31513 * 119.99609 * 0.27873 * 19 17 15 21 21 Si 1.86796 * 119.99953 * 180.27744 * 19 17 15 22 22 H 1.48497 * 109.47428 * 60.00399 * 21 19 17 23 23 H 1.48505 * 109.47025 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47045 * 300.00041 * 21 19 17 25 25 C 1.47320 * 125.61304 * 180.16243 * 12 10 9 26 26 H 1.09007 * 109.47224 * 185.49901 * 1 2 3 27 27 H 1.09001 * 109.47000 * 305.49700 * 1 2 3 28 28 H 1.08999 * 109.47331 * 65.50125 * 1 2 3 29 29 H 1.09011 * 109.47219 * 240.00531 * 2 1 3 30 30 H 1.09000 * 109.47874 * 120.00696 * 2 1 3 31 31 H 1.08998 * 109.47027 * 47.98139 * 4 3 2 32 32 H 1.09007 * 109.47188 * 167.97666 * 4 3 2 33 33 H 1.09007 * 109.46822 * 299.17057 * 5 4 3 34 34 H 1.08999 * 109.47516 * 59.16327 * 5 4 3 35 35 H 1.08993 * 109.47555 * 179.17048 * 5 4 3 36 36 H 1.09002 * 109.47097 * 49.99470 * 6 3 2 37 37 H 1.09006 * 109.47168 * 289.99777 * 6 3 2 38 38 H 1.09002 * 109.47086 * 59.99625 * 7 6 3 39 39 H 1.09006 * 109.46699 * 300.00225 * 7 6 3 40 40 H 1.09002 * 109.47150 * 59.99657 * 8 7 6 41 41 H 1.09000 * 109.46795 * 299.99908 * 8 7 6 42 42 H 0.96992 * 120.00193 * 359.97438 * 9 8 7 43 43 H 1.09007 * 110.36163 * 37.00089 * 13 12 10 44 44 H 1.08994 * 110.36596 * 274.67810 * 13 12 10 45 45 H 1.09000 * 111.00848 * 278.93994 * 14 13 12 46 46 H 1.08999 * 111.00209 * 155.08223 * 14 13 12 47 47 H 0.96692 * 114.00575 * 182.43862 * 16 15 14 48 48 H 0.97009 * 119.99688 * 179.97438 * 20 19 17 49 49 H 1.09000 * 110.06296 * 61.75253 * 25 12 10 50 50 H 1.08997 * 109.85380 * 300.49209 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 3.4123 1.4509 0.4626 5 6 3.4627 1.1861 1.9686 6 6 1.8769 1.9939 -1.3292 7 6 2.1587 3.4947 -1.2356 8 6 2.0094 4.1291 -2.6199 9 7 2.2798 5.5661 -2.5303 10 6 2.2068 6.3357 -3.6343 11 8 1.9169 5.8371 -4.7048 12 7 2.4550 7.6578 -3.5518 13 6 2.8162 8.3892 -2.3239 14 6 3.5765 9.6447 -2.8193 15 6 2.7903 9.9958 -4.1100 16 8 1.6210 10.7560 -3.7989 17 6 3.6670 10.7432 -5.0815 18 1 4.6816 10.9948 -4.8101 19 6 3.1756 11.1009 -6.3192 20 7 1.9401 10.7945 -6.6497 21 14 4.2647 12.0206 -7.5263 22 1 5.4611 11.1985 -7.8394 23 1 3.5057 12.2862 -8.7748 24 1 4.6930 13.3088 -6.9244 25 6 2.4074 8.6112 -4.6739 26 1 -0.3634 -1.0230 0.0985 27 1 -0.3633 0.5967 0.8367 28 1 -0.3634 0.4261 -0.9351 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 4.0043 0.6986 -0.0586 32 1 3.8180 2.4410 0.2540 33 1 2.8828 1.9471 2.4909 34 1 3.0435 0.2022 2.1788 35 1 4.4975 1.2205 2.3092 36 1 0.8617 1.8368 -1.6937 37 1 2.5855 1.5335 -2.0177 38 1 3.1738 3.6518 -0.8711 39 1 1.4500 3.9552 -0.5470 40 1 0.9941 3.9720 -2.9840 41 1 2.7177 3.6687 -3.3087 42 1 2.5107 5.9639 -1.6763 43 1 3.4630 7.7778 -1.6945 44 1 1.9189 8.6800 -1.7777 45 1 4.6158 9.4076 -3.0471 46 1 3.5125 10.4530 -2.0908 47 1 1.0745 10.9694 -4.5674 48 1 1.5942 11.0465 -7.5203 49 1 1.4015 8.6466 -5.0921 50 1 3.1205 8.3140 -5.4428 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591894951.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:40 Heat of formation + Delta-G solvation = -81.788291 kcal Electronic energy + Delta-G solvation = -26602.516921 eV Core-core repulsion = 22857.490477 eV Total energy + Delta-G solvation = -3745.026444 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.65393 -38.66590 -37.41421 -35.10320 -34.23462 -32.18147 -32.17619 -32.09974 -30.00679 -28.78676 -27.72339 -25.57726 -24.38369 -23.36850 -22.57997 -21.83415 -20.66172 -19.63872 -19.32109 -17.53135 -17.03892 -16.32544 -16.11270 -15.68261 -15.40439 -14.98791 -14.98074 -14.66204 -14.36023 -14.21130 -13.83795 -13.52290 -12.98782 -12.85847 -12.83578 -12.63135 -12.36662 -12.23665 -12.14586 -11.87682 -11.79578 -11.68422 -11.56230 -11.48252 -11.32214 -11.01909 -10.92733 -10.80484 -10.70415 -10.64150 -10.50005 -10.15022 -9.59274 -9.30877 -8.81172 -8.66151 -8.65146 -8.29904 -7.73480 -6.26523 -4.35037 3.09232 3.24494 3.29660 3.31611 3.56910 3.77369 4.27998 4.44834 4.57342 4.62006 4.82380 4.84863 4.91415 5.00165 5.02825 5.14435 5.16466 5.24128 5.31359 5.37225 5.39758 5.47773 5.58358 5.62528 5.65479 5.70287 5.72227 5.80600 5.88567 5.94331 5.99432 6.02338 6.05172 6.15393 6.52802 6.73150 6.74306 6.76799 6.82283 6.90751 7.00892 7.28241 7.34554 7.66234 7.75506 8.04889 8.55655 8.68431 9.15681 9.32624 9.42453 10.81319 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.028293 B = 0.002242 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.418692 B =12485.675098 C =12772.051525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.047 3.953 3 N -0.539 5.539 4 C 0.043 3.957 5 C -0.147 4.147 6 C 0.058 3.942 7 C -0.127 4.127 8 C 0.142 3.858 9 N -0.752 5.752 10 C 0.715 3.285 11 O -0.598 6.598 12 N -0.631 5.631 13 C 0.104 3.896 14 C -0.116 4.116 15 C 0.248 3.752 16 O -0.586 6.586 17 C -0.538 4.538 18 H 0.066 0.934 19 C 0.070 3.930 20 N -0.894 5.894 21 Si 0.904 3.096 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 C 0.122 3.878 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.034 0.966 30 H 0.074 0.926 31 H 0.032 0.968 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.052 0.948 35 H 0.057 0.943 36 H 0.080 0.920 37 H 0.037 0.963 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.393 0.607 43 H 0.055 0.945 44 H 0.062 0.938 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.384 0.616 48 H 0.271 0.729 49 H 0.062 0.938 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.824 -17.879 15.154 23.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.080 4.080 3 N -0.264 5.264 4 C -0.084 4.084 5 C -0.205 4.205 6 C -0.071 4.071 7 C -0.165 4.165 8 C 0.017 3.983 9 N -0.410 5.410 10 C 0.416 3.584 11 O -0.477 6.477 12 N -0.368 5.368 13 C -0.020 4.020 14 C -0.154 4.154 15 C 0.207 3.793 16 O -0.395 6.395 17 C -0.576 4.576 18 H 0.084 0.916 19 C -0.133 4.133 20 N -0.533 5.533 21 Si 0.732 3.268 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.200 1.200 25 C 0.000 4.000 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.052 0.948 30 H 0.092 0.908 31 H 0.051 0.949 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.055 0.945 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.227 0.773 43 H 0.073 0.927 44 H 0.080 0.920 45 H 0.094 0.906 46 H 0.094 0.906 47 H 0.235 0.765 48 H 0.081 0.919 49 H 0.081 0.919 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.400 -18.098 15.107 23.578 hybrid contribution 0.912 0.169 -1.486 1.752 sum 1.312 -17.929 13.622 22.555 Atomic orbital electron populations 1.21774 0.94770 1.01406 1.02582 1.22122 0.96350 0.88782 1.00775 1.62047 1.20389 1.18009 1.25916 1.22175 0.88556 1.01587 0.96116 1.21784 1.01402 1.01964 0.95310 1.22021 1.01856 0.94001 0.89196 1.21800 1.02772 0.95001 0.96965 1.21002 1.01341 0.79628 0.96335 1.45096 1.77378 1.08276 1.10202 1.15524 0.78622 0.80355 0.83858 1.90883 1.56419 1.72701 1.27724 1.48034 1.71655 1.05191 1.11946 1.22226 0.98463 0.93900 0.87366 1.22724 0.98640 0.95313 0.98715 1.19494 0.83659 0.86207 0.89913 1.86083 1.38745 1.75362 1.39315 1.21470 0.99406 1.37377 0.99365 0.91599 1.25079 0.95332 0.94887 0.98012 1.69642 1.14792 1.46176 1.22706 0.86452 0.80356 0.80140 0.79900 1.20046 1.21077 1.20004 1.22927 1.01641 0.88397 0.87016 0.92499 0.91758 0.92691 0.94785 0.90778 0.94949 0.90282 0.91821 0.92867 0.92414 0.90160 0.94500 0.91311 0.90369 0.91873 0.92127 0.77334 0.92665 0.92012 0.90570 0.90584 0.76496 0.91903 0.91914 0.91815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.94 37.15 0.37 -0.63 16 2 C 0.05 0.34 5.55 -3.83 -0.02 0.32 16 3 N -0.54 -4.38 4.39 -234.63 -1.03 -5.41 16 4 C 0.04 0.32 5.55 -3.83 -0.02 0.30 16 5 C -0.15 -0.95 9.99 37.15 0.37 -0.58 16 6 C 0.06 0.49 4.79 -3.83 -0.02 0.47 16 7 C -0.13 -1.16 5.29 -26.73 -0.14 -1.30 16 8 C 0.14 1.79 5.67 -4.04 -0.02 1.77 16 9 N -0.75 -11.32 5.52 -65.23 -0.36 -11.68 16 10 C 0.71 14.74 8.49 -86.92 -0.74 14.00 16 11 O -0.60 -14.76 16.67 5.28 0.09 -14.67 16 12 N -0.63 -13.26 3.33 -176.00 -0.59 -13.85 16 13 C 0.10 1.81 6.57 -2.53 -0.02 1.80 16 14 C -0.12 -2.29 6.23 -24.58 -0.15 -2.45 16 15 C 0.25 6.02 0.85 -89.94 -0.08 5.94 16 16 O -0.59 -14.81 13.08 -35.23 -0.46 -15.27 16 17 C -0.54 -14.10 8.11 -34.44 -0.28 -14.38 16 18 H 0.07 1.69 7.77 -52.48 -0.41 1.28 16 19 C 0.07 1.84 5.27 -17.82 -0.09 1.75 16 20 N -0.89 -24.01 10.96 55.43 0.61 -23.40 16 21 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 C 0.12 3.02 5.39 -2.90 -0.02 3.00 16 26 H 0.06 0.32 8.14 -51.92 -0.42 -0.10 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.39 6.97 -51.93 -0.36 0.03 16 29 H 0.03 0.25 8.00 -51.92 -0.42 -0.17 16 30 H 0.07 0.48 6.24 -51.93 -0.32 0.16 16 31 H 0.03 0.24 8.05 -51.93 -0.42 -0.18 16 32 H 0.08 0.59 5.94 -51.92 -0.31 0.29 16 33 H 0.06 0.45 8.14 -51.92 -0.42 0.02 16 34 H 0.05 0.33 6.52 -51.93 -0.34 -0.01 16 35 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.08 0.69 6.72 -51.93 -0.35 0.34 16 37 H 0.04 0.32 8.12 -51.93 -0.42 -0.10 16 38 H 0.07 0.59 6.28 -51.93 -0.33 0.27 16 39 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.39 4.91 6.95 -40.82 -0.28 4.63 16 43 H 0.06 0.77 7.30 -51.92 -0.38 0.39 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 45 H 0.08 1.45 8.03 -51.93 -0.42 1.04 16 46 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 47 H 0.38 9.99 7.24 45.56 0.33 10.32 16 48 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 49 H 0.06 1.70 8.00 -51.93 -0.42 1.28 16 50 H 0.06 1.72 7.81 -51.93 -0.41 1.31 16 LS Contribution 390.03 15.07 5.88 5.88 Total: -1.00 -30.45 390.03 -9.92 -40.37 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: -8.18 Total: 12.47 kcal Atomic # 6 Polarization: 10.88 SS G_CDS: -0.86 Total: 10.02 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: -1.37 Total: -54.34 kcal Atomic # 8 Polarization: -29.56 SS G_CDS: -0.37 Total: -29.94 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.45 -9.92 -40.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591894951.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.419 kcal (2) G-P(sol) polarization free energy of solvation -30.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds