Wall clock time and date at job start Fri Apr 10 2020 18:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46898 * 109.47492 * 2 1 4 4 C 1.46902 * 110.99766 * 66.04205 * 3 2 1 5 5 C 1.53004 * 109.47479 * 196.11519 * 4 3 2 6 6 C 1.46893 * 111.00487 * 189.99993 * 3 2 1 7 7 C 1.53000 * 109.47250 * 75.71260 * 6 3 2 8 8 H 1.08997 * 109.47143 * 295.09576 * 7 6 3 9 9 C 1.53003 * 109.47159 * 175.08861 * 7 6 3 10 10 N 1.46507 * 109.46739 * 55.09360 * 7 6 3 11 11 C 1.34781 * 119.99585 * 206.77917 * 10 7 6 12 12 O 1.21582 * 119.99745 * 5.06232 * 11 10 7 13 13 N 1.34778 * 119.99860 * 185.06530 * 11 10 7 14 14 C 1.47023 * 125.64592 * 5.08592 * 13 11 10 15 15 C 1.54326 * 107.26850 * 181.02377 * 14 13 11 16 16 C 1.55149 * 102.94181 * 22.19428 * 15 14 13 17 17 O 1.42910 * 111.00356 * 82.57201 * 16 15 14 18 18 C 1.50699 * 111.00595 * 206.38372 * 16 15 14 19 19 H 1.07998 * 120.00151 * 119.67676 * 18 16 15 20 20 C 1.37882 * 119.99973 * 299.67940 * 18 16 15 21 21 N 1.31509 * 119.99725 * 178.94986 * 20 18 16 22 22 Si 1.86797 * 119.99859 * 358.94843 * 20 18 16 23 23 H 1.48499 * 109.47142 * 89.83246 * 22 20 18 24 24 H 1.48503 * 109.47202 * 209.83429 * 22 20 18 25 25 H 1.48495 * 109.47382 * 329.83282 * 22 20 18 26 26 C 1.47422 * 125.64858 * 184.78303 * 13 11 10 27 27 H 1.09000 * 109.47068 * 60.00042 * 1 2 3 28 28 H 1.08999 * 109.47170 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46971 * 300.00090 * 1 2 3 30 30 H 1.09001 * 109.46971 * 239.99909 * 2 1 3 31 31 H 1.09000 * 109.47068 * 119.99958 * 2 1 3 32 32 H 1.08997 * 109.47763 * 316.11863 * 4 3 2 33 33 H 1.09000 * 109.46995 * 76.11351 * 4 3 2 34 34 H 1.08998 * 109.46548 * 61.14525 * 5 4 3 35 35 H 1.08990 * 109.47338 * 181.14980 * 5 4 3 36 36 H 1.09000 * 109.46761 * 301.14916 * 5 4 3 37 37 H 1.09002 * 109.47118 * 195.71744 * 6 3 2 38 38 H 1.09000 * 109.47276 * 315.71699 * 6 3 2 39 39 H 1.09002 * 109.46978 * 60.00397 * 9 7 6 40 40 H 1.09002 * 109.46741 * 179.97438 * 9 7 6 41 41 H 1.08996 * 109.46959 * 300.00189 * 9 7 6 42 42 H 0.96991 * 120.00131 * 26.77753 * 10 7 6 43 43 H 1.09002 * 109.88331 * 300.44409 * 14 13 11 44 44 H 1.09002 * 109.88187 * 61.60733 * 14 13 11 45 45 H 1.09000 * 110.71584 * 140.55561 * 15 14 13 46 46 H 1.09001 * 110.71879 * 263.65536 * 15 14 13 47 47 H 0.96700 * 113.99752 * 180.02562 * 17 16 15 48 48 H 0.97003 * 119.99631 * 180.02562 * 21 20 18 49 49 H 1.08997 * 110.36469 * 274.74741 * 26 13 11 50 50 H 1.09000 * 110.36643 * 37.06354 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6702 2.0669 1.2533 5 6 1.8253 3.5782 1.0721 6 6 3.4685 1.4311 -0.2381 7 6 3.7503 1.1728 -1.7196 8 1 3.4468 0.1578 -1.9756 9 6 5.2466 1.3416 -1.9911 10 7 2.9955 2.1285 -2.5341 11 6 2.6370 1.8057 -3.7926 12 8 2.8588 0.6895 -4.2205 13 7 2.0329 2.7204 -4.5768 14 6 1.8008 4.1294 -4.2271 15 6 1.0593 4.7799 -5.4140 16 6 0.4137 3.5637 -6.1290 17 8 -0.8129 3.1902 -5.4978 18 6 0.1994 3.8490 -7.5931 19 1 0.6804 3.2340 -8.3392 20 6 -0.6108 4.8954 -7.9801 21 7 -0.7813 5.1573 -9.2575 22 14 -1.4661 5.9410 -6.6900 23 1 -0.5896 7.0797 -6.3151 24 1 -2.7436 6.4602 -7.2409 25 1 -1.7449 5.1145 -5.4882 26 6 1.5010 2.4752 -5.9297 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.6379 1.8366 1.5167 33 1 2.3326 1.7265 2.0491 34 1 1.1480 3.9217 0.2902 35 1 1.5856 4.0828 2.0080 36 1 2.8528 3.8066 0.7890 37 1 3.8511 2.4135 0.0387 38 1 3.9602 0.6669 0.3638 39 1 5.8083 0.6307 -1.3851 40 1 5.4474 1.1572 -3.0464 41 1 5.5500 2.3567 -1.7350 42 1 2.7536 2.9933 -2.1676 43 1 1.1881 4.1922 -3.3278 44 1 2.7539 4.6329 -4.0646 45 1 0.2935 5.4695 -5.0589 46 1 1.7607 5.2908 -6.0736 47 1 -1.2528 2.4340 -5.9098 48 1 -1.3510 5.8937 -9.5298 49 1 2.2906 2.5838 -6.6731 50 1 1.0575 1.4813 -5.9886 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591934382.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:49 Heat of formation + Delta-G solvation = -64.447716 kcal Electronic energy + Delta-G solvation = -28288.813591 eV Core-core repulsion = 24544.539091 eV Total energy + Delta-G solvation = -3744.274500 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.94017 -38.64980 -37.49806 -35.07396 -34.39387 -32.40635 -32.01490 -31.37265 -29.89069 -29.18544 -28.15890 -25.71408 -25.03495 -23.23338 -22.61066 -21.56012 -20.47583 -19.76806 -19.55389 -17.82988 -17.17061 -16.40181 -15.88432 -15.45144 -15.33567 -15.04549 -14.81540 -14.56932 -14.26985 -14.10928 -13.65145 -13.52465 -13.17410 -12.94233 -12.83683 -12.57967 -12.42327 -12.35950 -12.09348 -11.98928 -11.94633 -11.78609 -11.58233 -11.57526 -11.33494 -11.28222 -11.01604 -10.85427 -10.61730 -10.51551 -10.32900 -10.03717 -9.64692 -8.95758 -8.78416 -8.70056 -8.51825 -8.49937 -7.82991 -6.20350 -4.32313 3.07579 3.29566 3.42668 3.60406 3.63615 3.70796 4.40866 4.43003 4.59409 4.70248 4.90651 4.95389 5.09623 5.10637 5.17773 5.23797 5.24842 5.29096 5.32368 5.40187 5.43955 5.44781 5.53001 5.62763 5.64567 5.68163 5.78966 5.80950 5.86242 5.94486 6.01235 6.03509 6.13635 6.16157 6.19110 6.54136 6.65438 6.70994 6.76406 6.79127 6.89979 6.96325 7.17713 7.46093 7.60577 8.21190 8.48093 8.77297 8.95631 9.08785 9.42694 10.90107 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.017000 B = 0.003835 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.620490 B = 7298.543246 C = 7849.116798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.052 3.948 3 N -0.532 5.532 4 C 0.047 3.953 5 C -0.149 4.149 6 C 0.044 3.956 7 C 0.167 3.833 8 H 0.086 0.914 9 C -0.164 4.164 10 N -0.727 5.727 11 C 0.723 3.277 12 O -0.605 6.605 13 N -0.627 5.627 14 C 0.108 3.892 15 C -0.123 4.123 16 C 0.216 3.784 17 O -0.571 6.571 18 C -0.551 4.551 19 H 0.079 0.921 20 C 0.089 3.911 21 N -0.888 5.888 22 Si 0.871 3.129 23 H -0.284 1.284 24 H -0.300 1.300 25 H -0.223 1.223 26 C 0.115 3.885 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.077 0.923 31 H 0.029 0.971 32 H 0.077 0.923 33 H 0.030 0.970 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.080 0.920 38 H 0.048 0.952 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.055 0.945 42 H 0.395 0.605 43 H 0.057 0.943 44 H 0.053 0.947 45 H 0.071 0.929 46 H 0.087 0.913 47 H 0.365 0.635 48 H 0.267 0.733 49 H 0.068 0.932 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.263 -4.527 21.901 23.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.076 4.076 3 N -0.257 5.257 4 C -0.081 4.081 5 C -0.207 4.207 6 C -0.085 4.085 7 C 0.060 3.940 8 H 0.104 0.896 9 C -0.223 4.223 10 N -0.382 5.382 11 C 0.425 3.575 12 O -0.485 6.485 13 N -0.364 5.364 14 C -0.016 4.016 15 C -0.161 4.161 16 C 0.175 3.825 17 O -0.377 6.377 18 C -0.588 4.588 19 H 0.097 0.903 20 C -0.117 4.117 21 N -0.524 5.524 22 Si 0.699 3.301 23 H -0.211 1.211 24 H -0.227 1.227 25 H -0.146 1.146 26 C -0.008 4.008 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.047 0.953 32 H 0.095 0.905 33 H 0.048 0.952 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.098 0.902 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.229 0.771 43 H 0.076 0.924 44 H 0.072 0.928 45 H 0.089 0.911 46 H 0.106 0.894 47 H 0.212 0.788 48 H 0.076 0.924 49 H 0.086 0.914 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.317 -4.557 21.518 23.180 hybrid contribution -0.254 0.290 0.938 1.014 sum 7.063 -4.267 22.456 23.924 Atomic orbital electron populations 1.21796 0.94757 1.01490 1.02530 1.22097 0.96321 0.88587 1.00597 1.61960 1.13111 1.16112 1.34492 1.22142 1.01073 0.94962 0.89892 1.21805 1.02137 0.94828 1.01886 1.22497 0.88386 1.01915 0.95681 1.20680 0.90417 0.94444 0.88462 0.89608 1.22203 0.95623 1.01617 1.02835 1.44845 1.60737 1.20114 1.12510 1.15427 0.78094 0.83517 0.80466 1.90855 1.62362 1.20727 1.74519 1.47632 1.61237 1.09559 1.17976 1.21934 0.98699 0.81927 0.98992 1.22890 0.99169 0.98350 0.95682 1.20146 0.81249 0.89077 0.91984 1.86482 1.38046 1.52898 1.60319 1.21163 1.31713 1.16564 0.89399 0.90289 1.24944 0.94943 0.96504 0.95264 1.69929 1.37439 1.29599 1.15410 0.87143 0.78567 0.80163 0.84253 1.21126 1.22728 1.14558 1.22858 0.96982 1.00295 0.80696 0.91494 0.92431 0.92899 0.90433 0.95302 0.90463 0.95215 0.91611 0.92496 0.92801 0.90214 0.93415 0.92062 0.91683 0.92606 0.77092 0.92440 0.92825 0.91057 0.89416 0.78770 0.92380 0.91407 0.91600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.88 37.16 0.37 -1.11 16 2 C 0.05 0.52 5.51 -3.83 -0.02 0.50 16 3 N -0.53 -5.27 4.12 -234.63 -0.97 -6.24 16 4 C 0.05 0.39 5.55 -3.82 -0.02 0.37 16 5 C -0.15 -1.17 10.00 37.16 0.37 -0.80 16 6 C 0.04 0.40 4.39 -3.83 -0.02 0.38 16 7 C 0.17 1.94 2.66 -67.93 -0.18 1.76 16 8 H 0.09 1.20 6.26 -51.93 -0.32 0.87 16 9 C -0.16 -1.70 9.50 37.16 0.35 -1.34 16 10 N -0.73 -10.15 4.73 -58.67 -0.28 -10.43 16 11 C 0.72 13.38 8.46 -86.91 -0.74 12.64 16 12 O -0.60 -13.22 16.24 5.29 0.09 -13.13 16 13 N -0.63 -11.87 3.32 -176.10 -0.59 -12.46 16 14 C 0.11 1.83 6.23 -3.06 -0.02 1.81 16 15 C -0.12 -2.48 4.80 -24.90 -0.12 -2.60 16 16 C 0.22 4.84 0.71 -89.51 -0.06 4.77 16 17 O -0.57 -12.64 10.43 -35.23 -0.37 -13.01 16 18 C -0.55 -14.62 8.84 -34.44 -0.30 -14.92 16 19 H 0.08 2.28 8.03 -52.49 -0.42 1.86 16 20 C 0.09 2.44 5.45 -17.82 -0.10 2.34 16 21 N -0.89 -26.15 13.96 55.43 0.77 -25.37 16 22 Si 0.87 20.90 24.05 -169.99 -4.09 16.81 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 25 H -0.22 -5.23 5.35 56.52 0.30 -4.93 16 26 C 0.11 2.42 6.08 -2.41 -0.01 2.41 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.47 6.28 -51.93 -0.33 0.14 16 30 H 0.08 0.90 6.71 -51.93 -0.35 0.55 16 31 H 0.03 0.26 8.12 -51.93 -0.42 -0.17 16 32 H 0.08 0.65 5.94 -51.93 -0.31 0.34 16 33 H 0.03 0.23 8.05 -51.93 -0.42 -0.19 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.05 0.40 6.52 -51.93 -0.34 0.06 16 37 H 0.08 0.64 6.24 -51.93 -0.32 0.32 16 38 H 0.05 0.38 8.00 -51.93 -0.42 -0.03 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.40 5.00 7.56 -40.82 -0.31 4.70 16 43 H 0.06 0.92 8.01 -51.93 -0.42 0.50 16 44 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.07 1.46 5.11 -51.93 -0.27 1.20 16 46 H 0.09 1.77 8.04 -51.93 -0.42 1.36 16 47 H 0.37 7.26 9.06 45.56 0.41 7.67 16 48 H 0.27 7.40 8.31 -40.82 -0.34 7.07 16 49 H 0.07 1.47 8.04 -51.93 -0.42 1.06 16 50 H 0.07 1.43 8.09 -51.93 -0.42 1.01 16 LS Contribution 381.95 15.07 5.76 5.76 Total: -1.00 -31.85 381.95 -8.27 -40.11 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: -8.09 Total: 11.76 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: -0.50 Total: 6.21 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: -1.06 Total: -54.50 kcal Atomic # 8 Polarization: -25.86 SS G_CDS: -0.28 Total: -26.14 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.09 Total: 16.81 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.85 -8.27 -40.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591934382.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.336 kcal (2) G-P(sol) polarization free energy of solvation -31.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds