Wall clock time and date at job start Fri Apr 10 2020 18:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46903 * 109.46821 * 2 1 4 4 C 1.46905 * 111.00189 * 293.00418 * 3 2 1 5 5 C 1.52998 * 109.47359 * 287.83201 * 4 3 2 6 6 C 1.46897 * 110.99882 * 56.96178 * 3 2 1 7 7 C 1.52995 * 109.47328 * 77.14650 * 6 3 2 8 8 H 1.08996 * 109.47029 * 60.59886 * 7 6 3 9 9 C 1.53006 * 109.47485 * 180.59729 * 7 6 3 10 10 N 1.46503 * 109.47223 * 300.59856 * 7 6 3 11 11 C 1.34771 * 119.99887 * 136.01022 * 10 7 6 12 12 O 1.21582 * 120.00468 * 0.02562 * 11 10 7 13 13 N 1.34784 * 119.99969 * 180.02562 * 11 10 7 14 14 C 1.47424 * 125.64425 * 0.02704 * 13 11 10 15 15 C 1.54913 * 104.82985 * 155.83909 * 14 13 11 16 16 C 1.55154 * 101.58488 * 37.00394 * 15 14 13 17 17 O 1.42901 * 110.71558 * 83.04141 * 16 15 14 18 18 C 1.50696 * 110.72376 * 206.13801 * 16 15 14 19 19 H 1.07999 * 119.99540 * 357.59242 * 18 16 15 20 20 C 1.37876 * 119.99940 * 177.31801 * 18 16 15 21 21 N 1.31507 * 120.00356 * 353.56922 * 20 18 16 22 22 Si 1.86798 * 119.99755 * 173.56928 * 20 18 16 23 23 H 1.48499 * 109.47295 * 94.97009 * 22 20 18 24 24 H 1.48500 * 109.47238 * 214.97308 * 22 20 18 25 25 H 1.48504 * 109.47396 * 334.96871 * 22 20 18 26 26 C 1.47312 * 125.61508 * 180.16764 * 13 11 10 27 27 H 1.09004 * 109.46948 * 172.68710 * 1 2 3 28 28 H 1.09000 * 109.46750 * 292.68004 * 1 2 3 29 29 H 1.08995 * 109.47644 * 52.67651 * 1 2 3 30 30 H 1.09003 * 109.46983 * 240.01079 * 2 1 3 31 31 H 1.08995 * 109.47933 * 120.00232 * 2 1 3 32 32 H 1.08997 * 109.47138 * 47.83301 * 4 3 2 33 33 H 1.09004 * 109.46694 * 167.82738 * 4 3 2 34 34 H 1.08991 * 109.47268 * 185.55824 * 5 4 3 35 35 H 1.09005 * 109.46516 * 305.55671 * 5 4 3 36 36 H 1.08996 * 109.47223 * 65.54985 * 5 4 3 37 37 H 1.08998 * 109.47018 * 317.14383 * 6 3 2 38 38 H 1.09004 * 109.47221 * 197.15006 * 6 3 2 39 39 H 1.08993 * 109.47027 * 300.00395 * 9 7 6 40 40 H 1.09009 * 109.46632 * 59.99883 * 9 7 6 41 41 H 1.08989 * 109.47406 * 179.97438 * 9 7 6 42 42 H 0.97005 * 119.99666 * 316.01348 * 10 7 6 43 43 H 1.08999 * 110.36849 * 36.99400 * 14 13 11 44 44 H 1.09003 * 110.36503 * 274.67255 * 14 13 11 45 45 H 1.09008 * 110.99800 * 278.93442 * 15 14 13 46 46 H 1.08997 * 111.00547 * 155.08590 * 15 14 13 47 47 H 0.96702 * 113.99882 * 182.44346 * 17 16 15 48 48 H 0.97000 * 120.00418 * 180.02562 * 21 20 18 49 49 H 1.08994 * 110.06689 * 61.75134 * 26 13 11 50 50 H 1.08998 * 109.85141 * 300.49037 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6898 2.0601 -1.2624 5 6 2.5712 1.5050 -2.3830 6 6 1.4901 2.1305 1.1497 7 6 2.2588 1.7349 2.4119 8 1 3.3136 1.9791 2.2864 9 6 1.6975 2.5003 3.6120 10 7 2.1147 0.2950 2.6403 11 6 3.1877 -0.4429 2.9875 12 8 4.2752 0.0864 3.1116 13 7 3.0552 -1.7677 3.1971 14 6 1.8015 -2.5347 3.0814 15 6 2.2515 -3.9895 2.7968 16 6 3.5239 -4.1000 3.6778 17 8 3.1777 -4.4106 5.0290 18 6 4.4699 -5.1325 3.1210 19 1 4.1940 -5.7011 2.2452 20 6 5.6900 -5.3471 3.7262 21 7 6.0825 -4.5671 4.7096 22 14 6.7855 -6.7458 3.1493 23 1 7.7655 -6.2310 2.1594 24 1 7.5106 -7.3185 4.3118 25 1 5.9515 -7.7999 2.5180 26 6 4.1391 -2.6879 3.5826 27 1 -0.3633 -1.0194 -0.1308 28 1 -0.3633 0.3963 0.9482 29 1 -0.3634 0.6230 -0.8172 30 1 1.8933 -0.5137 -0.8901 31 1 1.8935 -0.5138 0.8899 32 1 0.6414 1.8857 -1.5045 33 1 1.8654 3.1308 -1.1585 34 1 2.3970 2.0725 -3.2971 35 1 3.6195 1.5902 -2.0966 36 1 2.3251 0.4569 -2.5535 37 1 0.4335 1.8962 1.2792 38 1 1.6060 3.2000 0.9738 39 1 1.8047 3.5716 3.4420 40 1 0.6425 2.2561 3.7374 41 1 2.2448 2.2182 4.5112 42 1 1.2470 -0.1272 2.5417 43 1 1.1995 -2.1553 2.2558 44 1 1.2402 -2.4870 4.0146 45 1 2.4934 -4.1243 1.7425 46 1 1.4919 -4.7030 3.1161 47 1 3.9349 -4.4541 5.6289 48 1 6.9411 -4.7179 5.1351 49 1 4.5507 -2.3969 4.5490 50 1 4.9224 -2.6752 2.8247 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591934383.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:51 Heat of formation + Delta-G solvation = -63.656427 kcal Electronic energy + Delta-G solvation = -28541.584807 eV Core-core repulsion = 24797.344620 eV Total energy + Delta-G solvation = -3744.240187 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.04700 -38.56320 -37.26002 -34.96322 -34.23457 -32.19727 -31.59457 -31.33682 -29.73350 -28.97773 -27.67579 -25.53422 -24.98670 -23.89874 -22.69383 -21.11108 -20.08592 -19.69357 -19.39783 -17.43276 -17.04349 -16.47899 -16.13201 -15.62952 -15.11100 -14.93324 -14.51846 -14.31157 -14.17636 -13.79165 -13.38118 -13.23505 -12.96277 -12.89609 -12.76708 -12.59221 -12.23892 -12.15525 -12.08585 -12.00435 -11.69317 -11.52865 -11.45662 -11.33185 -11.13083 -11.02896 -10.86041 -10.75200 -10.65183 -10.60916 -10.48300 -10.14240 -9.48832 -9.25801 -8.70011 -8.68258 -8.27876 -8.20447 -7.67383 -6.25047 -4.33394 3.18975 3.24237 3.31407 3.34778 3.79756 3.85021 4.29429 4.49187 4.78022 4.86129 4.92534 5.01942 5.09128 5.14501 5.23162 5.31551 5.35096 5.38692 5.40489 5.47724 5.49559 5.60746 5.69194 5.72619 5.79135 5.82214 5.88341 5.93338 6.00551 6.06311 6.08779 6.16217 6.24683 6.31181 6.53703 6.75187 6.89487 6.94928 7.03765 7.05395 7.08066 7.34543 7.35823 7.71771 7.76433 8.06477 8.60759 8.70646 9.23613 9.31915 9.38541 10.82111 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.016867 B = 0.003754 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.611999 B = 7457.039529 C = 7922.254964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.029 3.971 3 N -0.528 5.528 4 C 0.046 3.954 5 C -0.147 4.147 6 C 0.040 3.960 7 C 0.160 3.840 8 H 0.105 0.895 9 C -0.162 4.162 10 N -0.741 5.741 11 C 0.717 3.283 12 O -0.593 6.593 13 N -0.632 5.632 14 C 0.104 3.896 15 C -0.115 4.115 16 C 0.247 3.753 17 O -0.585 6.585 18 C -0.539 4.539 19 H 0.066 0.934 20 C 0.071 3.929 21 N -0.891 5.891 22 Si 0.902 3.098 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.272 1.272 26 C 0.126 3.874 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.098 0.902 32 H 0.035 0.965 33 H 0.069 0.931 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.052 0.948 37 H 0.044 0.956 38 H 0.081 0.919 39 H 0.063 0.937 40 H 0.052 0.948 41 H 0.063 0.937 42 H 0.389 0.611 43 H 0.052 0.948 44 H 0.060 0.940 45 H 0.076 0.924 46 H 0.074 0.926 47 H 0.381 0.619 48 H 0.270 0.730 49 H 0.062 0.938 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.576 12.007 -8.168 19.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.099 4.099 3 N -0.251 5.251 4 C -0.082 4.082 5 C -0.205 4.205 6 C -0.089 4.089 7 C 0.054 3.946 8 H 0.123 0.877 9 C -0.221 4.221 10 N -0.398 5.398 11 C 0.420 3.580 12 O -0.471 6.471 13 N -0.370 5.370 14 C -0.020 4.020 15 C -0.153 4.153 16 C 0.207 3.793 17 O -0.393 6.393 18 C -0.577 4.577 19 H 0.084 0.916 20 C -0.132 4.132 21 N -0.530 5.530 22 Si 0.729 3.271 23 H -0.205 1.205 24 H -0.209 1.209 25 H -0.197 1.197 26 C 0.005 3.995 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.116 0.884 32 H 0.053 0.947 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.099 0.901 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.082 0.918 42 H 0.224 0.776 43 H 0.071 0.929 44 H 0.078 0.922 45 H 0.094 0.906 46 H 0.093 0.907 47 H 0.231 0.769 48 H 0.079 0.921 49 H 0.080 0.920 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.659 12.480 -8.163 18.929 hybrid contribution -0.149 -0.839 -0.176 0.870 sum -11.808 11.640 -8.339 18.560 Atomic orbital electron populations 1.22447 0.98768 1.02429 1.01562 1.22653 0.92315 0.90324 1.04586 1.62145 1.59121 1.02252 1.01566 1.22158 0.97544 0.98314 0.90176 1.21764 1.01032 1.00812 0.96902 1.22584 0.97128 0.98225 0.90915 1.20814 1.02416 0.79283 0.92108 0.87707 1.22177 1.00968 0.99965 0.98974 1.45368 1.10322 1.08418 1.75723 1.15485 0.84074 0.80353 0.78125 1.90876 1.25649 1.70874 1.59714 1.48069 1.11907 1.05258 1.71751 1.22212 0.87011 0.93336 0.99403 1.22709 0.98927 0.93488 1.00162 1.19501 0.89697 0.89559 0.80545 1.86104 1.38780 1.93582 1.20869 1.21493 1.01174 1.21083 1.13981 0.91582 1.25061 0.97418 0.96015 0.94712 1.69758 1.21924 1.37044 1.24232 0.86424 0.80239 0.82067 0.78386 1.20530 1.20944 1.19675 1.22886 0.87928 0.88698 1.00038 0.91852 0.92594 0.92647 0.90991 0.88391 0.94697 0.91255 0.92687 0.91659 0.92845 0.93777 0.90101 0.91818 0.92897 0.91829 0.77622 0.92925 0.92208 0.90558 0.90723 0.76903 0.92053 0.91952 0.91740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.79 9.06 37.16 0.34 -1.45 16 2 C 0.03 0.35 5.42 -3.82 -0.02 0.33 16 3 N -0.53 -6.14 4.59 -234.63 -1.08 -7.21 16 4 C 0.05 0.44 5.58 -3.82 -0.02 0.42 16 5 C -0.15 -1.42 9.86 37.16 0.37 -1.05 16 6 C 0.04 0.41 4.69 -3.83 -0.02 0.40 16 7 C 0.16 2.06 3.13 -67.93 -0.21 1.85 16 8 H 0.10 1.69 7.06 -51.93 -0.37 1.32 16 9 C -0.16 -1.74 9.52 37.16 0.35 -1.39 16 10 N -0.74 -10.94 2.74 -58.68 -0.16 -11.10 16 11 C 0.72 14.46 7.88 -86.92 -0.68 13.78 16 12 O -0.59 -14.46 16.07 5.29 0.09 -14.38 16 13 N -0.63 -13.02 3.33 -176.00 -0.59 -13.60 16 14 C 0.10 1.79 6.57 -2.53 -0.02 1.77 16 15 C -0.11 -2.25 6.23 -24.58 -0.15 -2.40 16 16 C 0.25 5.94 0.85 -89.94 -0.08 5.87 16 17 O -0.58 -14.56 13.08 -35.23 -0.46 -15.02 16 18 C -0.54 -14.07 8.10 -34.44 -0.28 -14.35 16 19 H 0.07 1.70 7.78 -52.49 -0.41 1.29 16 20 C 0.07 1.87 5.25 -17.82 -0.09 1.77 16 21 N -0.89 -23.89 10.99 55.43 0.61 -23.28 16 22 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 C 0.13 3.10 5.25 -2.90 -0.02 3.08 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.49 6.16 -51.93 -0.32 0.17 16 29 H 0.05 0.49 6.11 -51.93 -0.32 0.17 16 30 H 0.07 0.88 6.59 -51.93 -0.34 0.54 16 31 H 0.10 1.37 3.82 -51.93 -0.20 1.17 16 32 H 0.03 0.31 5.97 -51.93 -0.31 0.00 16 33 H 0.07 0.60 7.67 -51.93 -0.40 0.20 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.05 0.53 6.87 -51.93 -0.36 0.18 16 37 H 0.04 0.41 5.61 -51.93 -0.29 0.12 16 38 H 0.08 0.71 7.62 -51.93 -0.40 0.32 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.05 0.50 8.14 -51.92 -0.42 0.07 16 41 H 0.06 0.81 8.14 -51.94 -0.42 0.39 16 42 H 0.39 4.96 5.85 -40.82 -0.24 4.72 16 43 H 0.05 0.73 6.72 -51.93 -0.35 0.38 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.08 1.44 8.03 -51.92 -0.42 1.03 16 46 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 47 H 0.38 9.74 7.49 45.56 0.34 10.08 16 48 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 49 H 0.06 1.68 7.92 -51.93 -0.41 1.27 16 50 H 0.06 1.75 7.81 -51.93 -0.41 1.35 16 LS Contribution 377.57 15.07 5.69 5.69 Total: -1.00 -29.87 377.57 -9.16 -39.03 By element: Atomic # 1 Polarization: 23.47 SS G_CDS: -7.70 Total: 15.77 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: -0.53 Total: 8.61 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: -1.21 Total: -55.19 kcal Atomic # 8 Polarization: -29.02 SS G_CDS: -0.38 Total: -29.40 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.87 -9.16 -39.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591934383.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.627 kcal (2) G-P(sol) polarization free energy of solvation -29.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds