Wall clock time and date at job start Fri Apr 10 2020 18:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46903 * 109.46821 * 2 1 4 4 C 1.46905 * 111.00189 * 293.00418 * 3 2 1 5 5 C 1.52998 * 109.47359 * 287.83201 * 4 3 2 6 6 C 1.46897 * 110.99882 * 56.96178 * 3 2 1 7 7 C 1.52995 * 109.47328 * 77.14650 * 6 3 2 8 8 H 1.08996 * 109.47029 * 60.59886 * 7 6 3 9 9 C 1.53006 * 109.47485 * 180.59729 * 7 6 3 10 10 N 1.46503 * 109.47223 * 300.59856 * 7 6 3 11 11 C 1.34771 * 119.99887 * 136.01022 * 10 7 6 12 12 O 1.21582 * 120.00468 * 0.02562 * 11 10 7 13 13 N 1.34784 * 119.99969 * 180.02562 * 11 10 7 14 14 C 1.47424 * 125.64425 * 0.02704 * 13 11 10 15 15 C 1.54913 * 104.82985 * 155.83909 * 14 13 11 16 16 C 1.55154 * 101.58488 * 37.00394 * 15 14 13 17 17 O 1.42901 * 110.71558 * 83.04141 * 16 15 14 18 18 C 1.50696 * 110.72376 * 206.13801 * 16 15 14 19 19 H 1.07999 * 119.99540 * 357.59242 * 18 16 15 20 20 C 1.37876 * 119.99940 * 177.31801 * 18 16 15 21 21 N 1.31507 * 120.00356 * 353.56922 * 20 18 16 22 22 Si 1.86798 * 119.99755 * 173.56928 * 20 18 16 23 23 H 1.48499 * 109.47295 * 94.97009 * 22 20 18 24 24 H 1.48500 * 109.47238 * 214.97308 * 22 20 18 25 25 H 1.48504 * 109.47396 * 334.96871 * 22 20 18 26 26 C 1.47312 * 125.61508 * 180.16764 * 13 11 10 27 27 H 1.09004 * 109.46948 * 172.68710 * 1 2 3 28 28 H 1.09000 * 109.46750 * 292.68004 * 1 2 3 29 29 H 1.08995 * 109.47644 * 52.67651 * 1 2 3 30 30 H 1.09003 * 109.46983 * 240.01079 * 2 1 3 31 31 H 1.08995 * 109.47933 * 120.00232 * 2 1 3 32 32 H 1.08997 * 109.47138 * 47.83301 * 4 3 2 33 33 H 1.09004 * 109.46694 * 167.82738 * 4 3 2 34 34 H 1.08991 * 109.47268 * 185.55824 * 5 4 3 35 35 H 1.09005 * 109.46516 * 305.55671 * 5 4 3 36 36 H 1.08996 * 109.47223 * 65.54985 * 5 4 3 37 37 H 1.08998 * 109.47018 * 317.14383 * 6 3 2 38 38 H 1.09004 * 109.47221 * 197.15006 * 6 3 2 39 39 H 1.08993 * 109.47027 * 300.00395 * 9 7 6 40 40 H 1.09009 * 109.46632 * 59.99883 * 9 7 6 41 41 H 1.08989 * 109.47406 * 179.97438 * 9 7 6 42 42 H 0.97005 * 119.99666 * 316.01348 * 10 7 6 43 43 H 1.08999 * 110.36849 * 36.99400 * 14 13 11 44 44 H 1.09003 * 110.36503 * 274.67255 * 14 13 11 45 45 H 1.09008 * 110.99800 * 278.93442 * 15 14 13 46 46 H 1.08997 * 111.00547 * 155.08590 * 15 14 13 47 47 H 0.96702 * 113.99882 * 182.44346 * 17 16 15 48 48 H 0.97000 * 120.00418 * 180.02562 * 21 20 18 49 49 H 1.08994 * 110.06689 * 61.75134 * 26 13 11 50 50 H 1.08998 * 109.85141 * 300.49037 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6898 2.0601 -1.2624 5 6 2.5712 1.5050 -2.3830 6 6 1.4901 2.1305 1.1497 7 6 2.2588 1.7349 2.4119 8 1 3.3136 1.9791 2.2864 9 6 1.6975 2.5003 3.6120 10 7 2.1147 0.2950 2.6403 11 6 3.1877 -0.4429 2.9875 12 8 4.2752 0.0864 3.1116 13 7 3.0552 -1.7677 3.1971 14 6 1.8015 -2.5347 3.0814 15 6 2.2515 -3.9895 2.7968 16 6 3.5239 -4.1000 3.6778 17 8 3.1777 -4.4106 5.0290 18 6 4.4699 -5.1325 3.1210 19 1 4.1940 -5.7011 2.2452 20 6 5.6900 -5.3471 3.7262 21 7 6.0825 -4.5671 4.7096 22 14 6.7855 -6.7458 3.1493 23 1 7.7655 -6.2310 2.1594 24 1 7.5106 -7.3185 4.3118 25 1 5.9515 -7.7999 2.5180 26 6 4.1391 -2.6879 3.5826 27 1 -0.3633 -1.0194 -0.1308 28 1 -0.3633 0.3963 0.9482 29 1 -0.3634 0.6230 -0.8172 30 1 1.8933 -0.5137 -0.8901 31 1 1.8935 -0.5138 0.8899 32 1 0.6414 1.8857 -1.5045 33 1 1.8654 3.1308 -1.1585 34 1 2.3970 2.0725 -3.2971 35 1 3.6195 1.5902 -2.0966 36 1 2.3251 0.4569 -2.5535 37 1 0.4335 1.8962 1.2792 38 1 1.6060 3.2000 0.9738 39 1 1.8047 3.5716 3.4420 40 1 0.6425 2.2561 3.7374 41 1 2.2448 2.2182 4.5112 42 1 1.2470 -0.1272 2.5417 43 1 1.1995 -2.1553 2.2558 44 1 1.2402 -2.4870 4.0146 45 1 2.4934 -4.1243 1.7425 46 1 1.4919 -4.7030 3.1161 47 1 3.9349 -4.4541 5.6289 48 1 6.9411 -4.7179 5.1351 49 1 4.5507 -2.3969 4.5490 50 1 4.9224 -2.6752 2.8247 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591934383.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:50 Heat of formation + Delta-G solvation = -85.638040 kcal Electronic energy + Delta-G solvation = -28542.538002 eV Core-core repulsion = 24797.344620 eV Total energy + Delta-G solvation = -3745.193381 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.47413 -39.79898 -38.83049 -36.19502 -36.04325 -34.22093 -32.77623 -32.25443 -31.24478 -29.89349 -29.46674 -26.95420 -26.29607 -24.81386 -24.21000 -22.20931 -21.39737 -21.15481 -20.81434 -19.18331 -18.77871 -17.60493 -17.14103 -17.12927 -16.58888 -16.45708 -16.14174 -15.65509 -15.22584 -15.02577 -14.76076 -14.70225 -14.61149 -14.07232 -13.85508 -13.72206 -13.54423 -13.50953 -13.26475 -13.03413 -12.96361 -12.84462 -12.78354 -12.52672 -12.34793 -12.30677 -12.28405 -12.27864 -12.09707 -11.93478 -11.81145 -11.47748 -11.20360 -11.12363 -10.68368 -10.26873 -10.01599 -9.36160 -9.01333 -8.25185 -6.40946 1.41066 1.43522 1.53874 1.73122 2.23903 2.38805 2.98791 3.00949 3.12204 3.80193 3.91894 4.03738 4.07769 4.10315 4.18726 4.32234 4.35854 4.37831 4.40581 4.43474 4.54689 4.59301 4.65083 4.70550 4.74033 4.75220 4.81569 4.88259 5.03403 5.08082 5.10127 5.13300 5.14497 5.17922 5.27764 5.28688 5.30176 5.39620 5.47295 5.52632 5.67716 5.75707 6.04407 6.20178 6.25109 6.27864 6.65679 7.12421 7.28094 7.33757 7.66088 8.80426 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.016867 B = 0.003754 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.611999 B = 7457.039529 C = 7922.254964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.030 3.970 3 N -0.554 5.554 4 C 0.048 3.952 5 C -0.146 4.146 6 C 0.049 3.951 7 C 0.156 3.844 8 H 0.066 0.934 9 C -0.154 4.154 10 N -0.715 5.715 11 C 0.714 3.286 12 O -0.644 6.644 13 N -0.637 5.637 14 C 0.110 3.890 15 C -0.109 4.109 16 C 0.234 3.766 17 O -0.585 6.585 18 C -0.559 4.559 19 H 0.067 0.933 20 C 0.026 3.974 21 N -0.915 5.915 22 Si 0.962 3.038 23 H -0.281 1.281 24 H -0.280 1.280 25 H -0.264 1.264 26 C 0.147 3.853 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.050 0.950 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.043 0.957 36 H 0.045 0.955 37 H 0.066 0.934 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.075 0.925 41 H 0.035 0.965 42 H 0.403 0.597 43 H 0.096 0.904 44 H 0.070 0.930 45 H 0.082 0.918 46 H 0.091 0.909 47 H 0.374 0.626 48 H 0.269 0.731 49 H 0.025 0.975 50 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.637 12.677 -9.531 22.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.098 4.098 3 N -0.278 5.278 4 C -0.079 4.079 5 C -0.204 4.204 6 C -0.079 4.079 7 C 0.050 3.950 8 H 0.084 0.916 9 C -0.213 4.213 10 N -0.373 5.373 11 C 0.416 3.584 12 O -0.527 6.527 13 N -0.374 5.374 14 C -0.012 4.012 15 C -0.146 4.146 16 C 0.193 3.807 17 O -0.393 6.393 18 C -0.597 4.597 19 H 0.085 0.915 20 C -0.175 4.175 21 N -0.554 5.554 22 Si 0.787 3.213 23 H -0.207 1.207 24 H -0.206 1.206 25 H -0.188 1.188 26 C 0.023 3.977 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.068 0.932 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.084 0.916 38 H 0.119 0.881 39 H 0.106 0.894 40 H 0.094 0.906 41 H 0.055 0.945 42 H 0.241 0.759 43 H 0.115 0.885 44 H 0.088 0.912 45 H 0.100 0.900 46 H 0.109 0.891 47 H 0.223 0.777 48 H 0.078 0.922 49 H 0.043 0.957 50 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -14.804 13.165 -9.550 21.992 hybrid contribution 0.831 -0.987 0.212 1.308 sum -13.972 12.178 -9.339 20.754 Atomic orbital electron populations 1.22361 0.96344 1.03172 1.02446 1.22521 0.94248 0.90294 1.02746 1.62076 1.60306 1.02538 1.02904 1.22183 0.98136 0.98639 0.88929 1.21755 0.99790 1.00795 0.98016 1.22541 0.97469 0.99116 0.88823 1.21018 1.01079 0.78005 0.94867 0.91582 1.22105 1.01614 1.01073 0.96486 1.45177 1.09305 1.08949 1.73847 1.15696 0.84553 0.80256 0.77916 1.90837 1.28113 1.71857 1.61864 1.47976 1.12125 1.05452 1.71863 1.22357 0.85738 0.91500 1.01622 1.22698 0.97040 0.95489 0.99413 1.19693 0.91930 0.88383 0.80654 1.86092 1.38356 1.93581 1.21247 1.21847 1.01974 1.21683 1.14216 0.91462 1.25807 0.98740 0.98029 0.94890 1.69875 1.22172 1.38190 1.25125 0.85486 0.78472 0.79474 0.77861 1.20733 1.20586 1.18784 1.22332 0.88330 0.90370 0.96653 0.91256 0.91590 0.91752 0.92172 0.90907 0.93232 0.90111 0.90782 0.93818 0.93587 0.91567 0.88061 0.89382 0.90605 0.94548 0.75900 0.88546 0.91214 0.89983 0.89066 0.77745 0.92160 0.95680 0.95691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.72 9.06 71.98 0.65 -2.07 16 2 C 0.03 0.65 5.42 86.30 0.47 1.12 16 3 N -0.55 -11.86 4.59 -896.22 -4.11 -15.97 16 4 C 0.05 0.80 5.58 86.30 0.48 1.28 16 5 C -0.15 -2.62 9.86 71.98 0.71 -1.91 16 6 C 0.05 0.86 4.69 86.30 0.40 1.26 16 7 C 0.16 3.82 3.13 44.99 0.14 3.96 16 8 H 0.07 2.18 7.06 -2.39 -0.02 2.17 16 9 C -0.15 -2.99 9.52 71.98 0.69 -2.30 16 10 N -0.72 -20.39 2.74 -457.82 -1.26 -21.65 16 11 C 0.71 29.40 7.88 179.05 1.41 30.81 16 12 O -0.64 -33.18 16.07 -3.97 -0.06 -33.24 16 13 N -0.64 -26.59 3.33 -829.00 -2.76 -29.35 16 14 C 0.11 3.56 6.57 86.86 0.57 4.13 16 15 C -0.11 -4.10 6.23 31.99 0.20 -3.90 16 16 C 0.23 11.41 0.85 -10.35 -0.01 11.40 16 17 O -0.59 -29.59 13.08 -148.98 -1.95 -31.54 16 18 C -0.56 -29.66 8.10 25.60 0.21 -29.45 16 19 H 0.07 3.46 7.78 -2.91 -0.02 3.44 16 20 C 0.03 1.41 5.25 84.66 0.44 1.85 16 21 N -0.91 -50.87 10.99 21.45 0.24 -50.64 16 22 Si 0.96 42.62 29.54 68.60 2.03 44.65 16 23 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 24 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 25 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 26 C 0.15 7.56 5.25 86.68 0.45 8.02 16 27 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 28 H 0.07 0.84 6.16 -2.39 -0.01 0.83 16 29 H 0.06 0.86 6.11 -2.39 -0.01 0.84 16 30 H 0.06 1.42 6.59 -2.39 -0.02 1.40 16 31 H 0.07 1.92 3.82 -2.39 -0.01 1.91 16 32 H 0.05 0.69 5.97 -2.39 -0.01 0.68 16 33 H 0.08 1.15 7.67 -2.38 -0.02 1.14 16 34 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 36 H 0.05 0.88 6.87 -2.39 -0.02 0.86 16 37 H 0.07 0.91 5.61 -2.39 -0.01 0.89 16 38 H 0.10 1.41 7.62 -2.39 -0.02 1.39 16 39 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 41 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.40 9.19 5.85 -92.70 -0.54 8.65 16 43 H 0.10 2.31 6.72 -2.39 -0.02 2.29 16 44 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 45 H 0.08 2.99 8.03 -2.38 -0.02 2.97 16 46 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 47 H 0.37 19.83 7.49 -74.06 -0.55 19.28 16 48 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 49 H 0.02 1.44 7.92 -2.39 -0.02 1.42 16 50 H 0.02 1.44 7.81 -2.39 -0.02 1.42 16 Total: -1.00 -69.51 377.57 -1.21 -70.72 By element: Atomic # 1 Polarization: 42.97 SS G_CDS: -0.15 Total: 42.82 kcal Atomic # 6 Polarization: 17.38 SS G_CDS: 6.82 Total: 24.20 kcal Atomic # 7 Polarization: -109.71 SS G_CDS: -7.89 Total: -117.60 kcal Atomic # 8 Polarization: -62.77 SS G_CDS: -2.01 Total: -64.78 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -69.51 -1.21 -70.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591934383.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.922 kcal (2) G-P(sol) polarization free energy of solvation -69.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds