Wall clock time and date at job start Fri Apr 10 2020 18:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.46821 * 2 1 4 4 H 1.09002 * 109.47317 * 305.00587 * 3 2 1 5 5 C 1.52996 * 109.46975 * 185.00119 * 3 2 1 6 6 N 1.46907 * 109.47025 * 65.00185 * 3 2 1 7 7 C 1.46892 * 110.99762 * 66.04486 * 6 3 2 8 8 C 1.46898 * 110.99802 * 190.00225 * 6 3 2 9 9 C 1.52998 * 109.47181 * 170.00196 * 8 6 3 10 10 N 1.46495 * 109.47267 * 179.97438 * 9 8 6 11 11 C 1.34783 * 119.99751 * 180.02562 * 10 9 8 12 12 O 1.21584 * 120.00304 * 359.97438 * 11 10 9 13 13 N 1.34782 * 119.99610 * 179.97438 * 11 10 9 14 14 C 1.47021 * 125.64903 * 359.95841 * 13 11 10 15 15 C 1.54371 * 107.28632 * 181.12818 * 14 13 11 16 16 C 1.55156 * 102.92059 * 22.13773 * 15 14 13 17 17 O 1.42894 * 111.00351 * 82.64238 * 16 15 14 18 18 C 1.50705 * 111.00016 * 206.45621 * 16 15 14 19 19 H 1.07993 * 120.00222 * 356.18276 * 18 16 15 20 20 C 1.37881 * 119.99392 * 175.91314 * 18 16 15 21 21 N 1.31509 * 120.00570 * 354.23595 * 20 18 16 22 22 Si 1.86802 * 119.99449 * 174.23797 * 20 18 16 23 23 H 1.48500 * 109.47140 * 94.98922 * 22 20 18 24 24 H 1.48506 * 109.47182 * 214.98446 * 22 20 18 25 25 H 1.48500 * 109.47323 * 334.98680 * 22 20 18 26 26 C 1.47424 * 125.64568 * 179.97438 * 13 11 10 27 27 H 1.09006 * 109.46950 * 299.99352 * 1 2 3 28 28 H 1.08992 * 109.47856 * 59.99975 * 1 2 3 29 29 H 1.09001 * 109.46782 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47450 * 240.00880 * 2 1 3 31 31 H 1.08994 * 109.47629 * 119.99533 * 2 1 3 32 32 H 1.08993 * 109.47336 * 299.99748 * 5 3 2 33 33 H 1.09001 * 109.47211 * 60.00590 * 5 3 2 34 34 H 1.09006 * 109.46652 * 180.02562 * 5 3 2 35 35 H 1.09004 * 109.47439 * 183.95154 * 7 6 3 36 36 H 1.09005 * 109.47642 * 303.95324 * 7 6 3 37 37 H 1.09002 * 109.47112 * 63.95568 * 7 6 3 38 38 H 1.08995 * 109.47342 * 49.99903 * 8 6 3 39 39 H 1.09004 * 109.46982 * 289.99665 * 8 6 3 40 40 H 1.09004 * 109.47132 * 59.99425 * 9 8 6 41 41 H 1.09004 * 109.46822 * 300.00171 * 9 8 6 42 42 H 0.96999 * 119.99964 * 359.97438 * 10 9 8 43 43 H 1.08996 * 109.87865 * 300.51069 * 14 13 11 44 44 H 1.09004 * 109.88436 * 61.67611 * 14 13 11 45 45 H 1.09003 * 110.70184 * 263.79158 * 15 14 13 46 46 H 1.08998 * 110.75668 * 140.50398 * 15 14 13 47 47 H 0.96708 * 113.99643 * 183.17715 * 17 16 15 48 48 H 0.96997 * 120.00732 * 179.97438 * 21 20 18 49 49 H 1.08999 * 110.36723 * 36.99330 * 26 13 11 50 50 H 1.09001 * 110.45885 * 274.72191 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9817 -0.8418 5 6 3.5647 1.4445 -0.1257 6 7 1.6513 2.0993 1.2553 7 6 2.3340 1.4873 2.4029 8 6 1.9122 3.5438 1.1964 9 6 1.2732 4.2272 2.4070 10 7 1.5340 5.6676 2.3486 11 6 1.0638 6.4774 3.3181 12 8 0.4229 6.0125 4.2408 13 7 1.3041 7.8025 3.2646 14 6 2.0619 8.4941 2.2115 15 6 2.1014 9.9919 2.5832 16 6 1.8478 9.9763 4.1138 17 8 3.0556 9.7129 4.8305 18 6 1.2227 11.2692 4.5709 19 1 1.0703 12.0738 3.8669 20 6 0.8405 11.4227 5.8867 21 7 0.9158 10.4051 6.7164 22 14 0.2156 13.0762 6.4909 23 1 -1.2679 13.0980 6.4272 24 1 0.6539 13.2885 7.8938 25 1 0.7639 14.1565 5.6321 26 6 0.8510 8.7984 4.2527 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5137 0.8899 32 1 3.9994 0.9055 0.7160 33 1 3.8531 0.9572 -1.0572 34 1 3.9280 2.4722 -0.1253 35 1 1.9760 1.9449 3.3252 36 1 2.1240 0.4178 2.4227 37 1 3.4088 1.6449 2.3126 38 1 1.4854 3.9531 0.2808 39 1 2.9880 3.7193 1.2061 40 1 1.7000 3.8178 3.3226 41 1 0.1975 4.0516 2.3974 42 1 2.0456 6.0384 1.6127 43 1 3.0761 8.0978 2.1636 44 1 1.5647 8.3633 1.2503 45 1 1.3119 10.5380 2.0670 46 1 3.0783 10.4200 2.3586 47 1 2.9380 9.6454 5.7880 48 1 0.6472 10.5132 7.6422 49 1 0.8943 8.3814 5.2588 50 1 -0.1619 9.1292 4.0232 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591945079.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:57 Heat of formation + Delta-G solvation = -99.117144 kcal Electronic energy + Delta-G solvation = -27037.098072 eV Core-core repulsion = 23291.320194 eV Total energy + Delta-G solvation = -3745.777879 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.25877 -39.86191 -39.04590 -36.15010 -36.04142 -34.21966 -33.88599 -31.85990 -30.63898 -29.74873 -29.24733 -27.33671 -26.49895 -24.70356 -24.03343 -22.60772 -21.45013 -21.09303 -20.35123 -19.25798 -18.79359 -17.69822 -17.15599 -17.02148 -16.56372 -16.27703 -16.20509 -15.73552 -15.29890 -15.22381 -14.81727 -14.63793 -14.59740 -14.55862 -14.15234 -13.75418 -13.72901 -13.55473 -13.26928 -12.98228 -12.86307 -12.81937 -12.78040 -12.50310 -12.31670 -12.24359 -12.18693 -12.08338 -12.07624 -12.04445 -11.57831 -11.40832 -11.29511 -11.15855 -10.68515 -10.32481 -10.18065 -9.31068 -9.22987 -8.23388 -6.40857 1.42059 1.44746 1.55094 1.64428 2.16047 2.38977 2.84860 3.01896 3.30415 3.80045 3.81266 3.90439 4.04199 4.10397 4.17986 4.21700 4.33175 4.36085 4.39998 4.51704 4.55569 4.59829 4.63598 4.73440 4.78894 4.82156 4.85173 4.90907 4.98665 5.04473 5.09411 5.12688 5.16347 5.22467 5.28477 5.32202 5.39176 5.41417 5.47288 5.49377 5.57090 5.77179 6.04908 6.08447 6.15675 6.20889 6.66645 7.07738 7.27997 7.34165 7.58314 8.81161 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.032810 B = 0.002375 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.187707 B =11787.538651 C =12067.331721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.112 4.112 3 C 0.080 3.920 4 H 0.085 0.915 5 C -0.184 4.184 6 N -0.538 5.538 7 C 0.014 3.986 8 C 0.058 3.942 9 C 0.147 3.853 10 N -0.728 5.728 11 C 0.710 3.290 12 O -0.646 6.646 13 N -0.634 5.634 14 C 0.107 3.893 15 C -0.110 4.110 16 C 0.231 3.769 17 O -0.586 6.586 18 C -0.556 4.556 19 H 0.070 0.930 20 C 0.024 3.976 21 N -0.915 5.915 22 Si 0.964 3.036 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.264 1.264 26 C 0.128 3.872 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.080 0.920 37 H 0.036 0.964 38 H 0.093 0.907 39 H 0.051 0.949 40 H 0.048 0.952 41 H 0.054 0.946 42 H 0.409 0.591 43 H 0.073 0.927 44 H 0.091 0.909 45 H 0.089 0.911 46 H 0.086 0.914 47 H 0.372 0.628 48 H 0.268 0.732 49 H 0.042 0.958 50 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.748 -16.854 -16.932 24.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.150 4.150 3 C -0.028 4.028 4 H 0.104 0.896 5 C -0.243 4.243 6 N -0.262 5.262 7 C -0.134 4.134 8 C -0.070 4.070 9 C 0.023 3.977 10 N -0.386 5.386 11 C 0.411 3.589 12 O -0.529 6.529 13 N -0.370 5.370 14 C -0.015 4.015 15 C -0.148 4.148 16 C 0.191 3.809 17 O -0.394 6.394 18 C -0.594 4.594 19 H 0.089 0.911 20 C -0.177 4.177 21 N -0.554 5.554 22 Si 0.790 3.210 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.188 1.188 26 C 0.005 3.995 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.099 0.901 37 H 0.054 0.946 38 H 0.111 0.889 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.245 0.755 43 H 0.092 0.908 44 H 0.109 0.891 45 H 0.108 0.892 46 H 0.105 0.895 47 H 0.220 0.780 48 H 0.078 0.922 49 H 0.061 0.939 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.991 -17.400 -16.656 24.416 hybrid contribution 0.245 1.093 1.275 1.697 sum 4.235 -16.307 -15.381 22.813 Atomic orbital electron populations 1.21641 0.95658 1.00992 1.01818 1.21585 0.96348 0.94720 1.02345 1.21845 0.93851 0.95876 0.91219 0.89639 1.22447 0.96836 1.02087 1.02935 1.62032 1.58389 1.01824 1.03944 1.22535 0.96741 1.00788 0.93322 1.22106 0.98994 0.88475 0.97456 1.21059 1.00339 0.77641 0.98704 1.44787 1.59660 1.07471 1.26650 1.15726 0.80000 0.80407 0.82719 1.90849 1.48393 1.75459 1.38166 1.47881 1.56740 1.04437 1.27986 1.22134 0.96043 0.92897 0.90429 1.22606 1.03184 0.94719 0.94284 1.19871 0.81380 0.90088 0.89558 1.86088 1.34943 1.94696 1.23632 1.21808 1.41434 1.00615 0.95549 0.91139 1.25856 0.94489 1.00168 0.97139 1.69897 1.48235 1.31510 1.05778 0.85448 0.78203 0.79832 0.77556 1.20424 1.20948 1.18813 1.22680 0.97759 0.88544 0.90551 0.93121 0.93064 0.92935 0.90520 0.91929 0.92344 0.90917 0.92789 0.92472 0.90132 0.94571 0.88870 0.93103 0.93389 0.92739 0.75455 0.90843 0.89066 0.89242 0.89509 0.77970 0.92224 0.93935 0.94412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.80 71.98 0.71 -1.25 16 2 C -0.11 -1.31 5.33 30.60 0.16 -1.15 16 3 C 0.08 1.02 2.31 44.92 0.10 1.12 16 4 H 0.09 1.06 7.93 -2.39 -0.02 1.04 16 5 C -0.18 -2.05 8.44 71.98 0.61 -1.44 16 6 N -0.54 -8.98 4.17 -897.03 -3.74 -12.72 16 7 C 0.01 0.23 8.44 127.69 1.08 1.31 16 8 C 0.06 1.01 4.64 86.30 0.40 1.41 16 9 C 0.15 3.84 5.60 86.38 0.48 4.32 16 10 N -0.73 -21.34 5.52 -478.53 -2.64 -23.98 16 11 C 0.71 29.69 8.49 179.05 1.52 31.21 16 12 O -0.65 -33.48 16.60 -3.98 -0.07 -33.54 16 13 N -0.63 -26.45 3.33 -829.62 -2.76 -29.21 16 14 C 0.11 3.41 6.15 86.75 0.53 3.94 16 15 C -0.11 -4.09 6.13 31.80 0.19 -3.89 16 16 C 0.23 11.22 0.88 -10.14 -0.01 11.21 16 17 O -0.59 -30.16 13.17 -148.98 -1.96 -32.12 16 18 C -0.56 -28.92 8.25 25.60 0.21 -28.71 16 19 H 0.07 3.53 7.79 -2.91 -0.02 3.50 16 20 C 0.02 1.29 5.27 84.66 0.45 1.73 16 21 N -0.92 -50.74 10.70 21.45 0.23 -50.51 16 22 Si 0.96 42.00 29.54 68.60 2.03 44.02 16 23 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 24 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 25 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 26 C 0.13 6.48 5.40 86.86 0.47 6.95 16 27 H 0.05 0.87 7.75 -2.38 -0.02 0.86 16 28 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.75 6.26 -2.39 -0.01 0.74 16 32 H 0.06 0.69 6.42 -2.39 -0.02 0.67 16 33 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.05 0.64 6.91 -2.38 -0.02 0.62 16 35 H 0.06 1.14 6.47 -2.38 -0.02 1.12 16 36 H 0.08 1.17 6.21 -2.38 -0.01 1.15 16 37 H 0.04 0.56 6.46 -2.39 -0.02 0.54 16 38 H 0.09 1.39 7.93 -2.39 -0.02 1.37 16 39 H 0.05 0.81 7.06 -2.38 -0.02 0.80 16 40 H 0.05 1.41 6.55 -2.38 -0.02 1.40 16 41 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.41 9.10 7.46 -92.71 -0.69 8.41 16 43 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 44 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 45 H 0.09 3.08 8.03 -2.39 -0.02 3.07 16 46 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 47 H 0.37 20.20 7.54 -74.05 -0.56 19.64 16 48 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 49 H 0.04 2.49 7.31 -2.39 -0.02 2.47 16 50 H 0.04 2.00 8.03 -2.39 -0.02 1.98 16 Total: -1.00 -67.82 385.02 -2.32 -70.13 By element: Atomic # 1 Polarization: 41.45 SS G_CDS: -0.31 Total: 41.13 kcal Atomic # 6 Polarization: 19.88 SS G_CDS: 6.91 Total: 26.79 kcal Atomic # 7 Polarization: -107.51 SS G_CDS: -8.91 Total: -116.41 kcal Atomic # 8 Polarization: -63.63 SS G_CDS: -2.03 Total: -65.66 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.02 kcal Total: -67.82 -2.32 -70.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591945079.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.982 kcal (2) G-P(sol) polarization free energy of solvation -67.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds