Wall clock time and date at job start Fri Apr 10 2020 18:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 H 1.08994 * 109.47174 * 57.31118 * 3 2 1 5 5 C 1.52996 * 109.47027 * 177.31592 * 3 2 1 6 6 N 1.46904 * 109.46912 * 297.31233 * 3 2 1 7 7 C 1.46901 * 110.99950 * 169.74373 * 6 3 2 8 8 C 1.46898 * 111.00149 * 293.69424 * 6 3 2 9 9 C 1.52997 * 109.47274 * 169.99860 * 8 6 3 10 10 N 1.46499 * 109.47161 * 180.02562 * 9 8 6 11 11 C 1.34777 * 120.00221 * 180.02562 * 10 9 8 12 12 O 1.21589 * 119.99988 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00400 * 179.97438 * 11 10 9 14 14 C 1.47027 * 125.64566 * 359.69798 * 13 11 10 15 15 C 1.54339 * 107.26345 * 178.84901 * 14 13 11 16 16 C 1.55160 * 103.02027 * 338.13560 * 15 14 13 17 17 O 1.42897 * 111.00355 * 277.23765 * 16 15 14 18 18 C 1.50693 * 111.03401 * 153.39834 * 16 15 14 19 19 H 1.08002 * 120.00138 * 6.33103 * 18 16 15 20 20 C 1.37885 * 120.00054 * 186.33209 * 18 16 15 21 21 N 1.31514 * 119.99452 * 0.02562 * 20 18 16 22 22 Si 1.86797 * 120.00038 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47095 * 60.00337 * 22 20 18 24 24 H 1.48506 * 109.46573 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47319 * 299.99856 * 22 20 18 26 26 C 1.47421 * 125.65208 * 179.97438 * 13 11 10 27 27 H 1.09001 * 109.47098 * 304.58330 * 1 2 3 28 28 H 1.09002 * 109.47036 * 64.58364 * 1 2 3 29 29 H 1.08997 * 109.47359 * 184.57940 * 1 2 3 30 30 H 1.08994 * 109.46860 * 239.99265 * 2 1 3 31 31 H 1.09004 * 109.46794 * 119.99615 * 2 1 3 32 32 H 1.09005 * 109.46909 * 299.99719 * 5 3 2 33 33 H 1.09003 * 109.47480 * 59.99853 * 5 3 2 34 34 H 1.08998 * 109.46988 * 179.97438 * 5 3 2 35 35 H 1.08992 * 109.47344 * 66.60723 * 7 6 3 36 36 H 1.08996 * 109.46819 * 186.60934 * 7 6 3 37 37 H 1.09002 * 109.46661 * 306.61007 * 7 6 3 38 38 H 1.09004 * 109.47524 * 290.00392 * 8 6 3 39 39 H 1.09007 * 109.47000 * 49.99866 * 8 6 3 40 40 H 1.08994 * 109.47314 * 300.00121 * 9 8 6 41 41 H 1.09002 * 109.47037 * 60.00811 * 9 8 6 42 42 H 0.96998 * 120.00146 * 0.02562 * 10 9 8 43 43 H 1.08998 * 109.87963 * 298.38993 * 14 13 11 44 44 H 1.08997 * 109.88358 * 59.55336 * 14 13 11 45 45 H 1.08996 * 110.84398 * 219.67014 * 15 14 13 46 46 H 1.08996 * 110.51501 * 96.45248 * 15 14 13 47 47 H 0.96705 * 114.00091 * 173.65044 * 17 16 15 48 48 H 0.96999 * 119.99460 * 180.02562 * 21 20 18 49 49 H 1.08999 * 110.36557 * 322.93685 * 26 13 11 50 50 H 1.09003 * 110.36698 * 85.14528 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6379 1.9700 0.8648 5 6 3.5685 1.4430 0.0675 6 7 1.6041 2.1159 -1.2306 7 6 1.8620 3.5604 -1.1599 8 6 2.2471 1.5236 -2.4111 9 6 1.5906 2.0730 -3.6791 10 7 2.2316 1.4817 -4.8563 11 6 1.8150 1.8213 -6.0923 12 8 0.9075 2.6186 -6.2304 13 7 2.4050 1.2778 -7.1754 14 6 3.5126 0.3112 -7.1532 15 6 3.8359 -0.0487 -8.6188 16 6 2.5235 0.3103 -9.3645 17 8 1.5705 -0.7498 -9.2634 18 6 2.7968 0.6514 -10.8067 19 1 3.7896 0.5250 -11.2127 20 6 1.7794 1.1249 -11.6079 21 7 0.5706 1.2792 -11.1133 22 14 2.1184 1.5484 -13.3954 23 1 2.6023 0.3385 -14.1076 24 1 0.8684 2.0319 -14.0350 25 1 3.1535 2.6108 -13.4647 26 6 2.0504 1.5582 -8.5785 27 1 -0.3633 0.5833 0.8461 28 1 -0.3633 0.4411 -0.9282 29 1 -0.3634 -1.0243 0.0820 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.8920 0.9432 0.9807 33 1 3.9707 0.9154 -0.7974 34 1 3.9318 2.4706 0.0671 35 1 2.9374 3.7372 -1.1449 36 1 1.4253 4.0504 -2.0301 37 1 1.4145 3.9653 -0.2522 38 1 3.3075 1.7760 -2.4123 39 1 2.1317 0.4400 -2.3824 40 1 0.5303 1.8205 -3.6780 41 1 1.7062 3.1565 -3.7079 42 1 2.9558 0.8459 -4.7463 43 1 4.3856 0.7588 -6.6782 44 1 3.2117 -0.5851 -6.6109 45 1 4.0572 -1.1114 -8.7174 46 1 4.6658 0.5548 -8.9862 47 1 0.7019 -0.5341 -9.6297 48 1 -0.1452 1.6119 -11.6770 49 1 0.9724 1.6841 -8.6795 50 1 2.5702 2.4494 -8.9303 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591945083.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:03 Heat of formation + Delta-G solvation = -76.779242 kcal Electronic energy + Delta-G solvation = -27245.107073 eV Core-core repulsion = 23500.297838 eV Total energy + Delta-G solvation = -3744.809235 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.73588 -39.04406 -37.34080 -34.74908 -34.18267 -33.09988 -32.19976 -30.44602 -29.83509 -28.71101 -27.65988 -25.96965 -24.90414 -23.67040 -22.69573 -22.07108 -19.99970 -19.63277 -19.11012 -17.54807 -16.99574 -16.54446 -15.92738 -15.50583 -15.17689 -15.04173 -14.77541 -14.35973 -14.26856 -13.95368 -13.91920 -13.50114 -13.38101 -13.00053 -12.78280 -12.75521 -12.46596 -12.13615 -12.05717 -11.92193 -11.68959 -11.59061 -11.47457 -11.44967 -11.12329 -10.99724 -10.94150 -10.79772 -10.71206 -10.58414 -10.46960 -10.16881 -9.58279 -9.33351 -8.76766 -8.66349 -8.54856 -8.32745 -7.64727 -6.24376 -4.34381 3.04038 3.24347 3.30030 3.31627 3.77177 3.80670 4.28430 4.42600 4.58125 4.64893 4.80932 4.87372 4.96807 5.02537 5.09514 5.12826 5.25404 5.31630 5.37124 5.40464 5.43206 5.50062 5.66342 5.67646 5.72426 5.77873 5.79080 5.83219 5.93139 5.98175 6.01311 6.04045 6.15402 6.23861 6.53485 6.70320 6.72900 6.81757 6.88546 6.91731 7.00883 7.27020 7.35991 7.68663 7.77409 8.06652 8.57740 8.69875 9.18549 9.33124 9.41324 10.82580 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.027968 B = 0.002536 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.914767 B =11036.975889 C =11163.158858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.117 4.117 3 C 0.080 3.920 4 H 0.083 0.917 5 C -0.188 4.188 6 N -0.527 5.527 7 C 0.018 3.982 8 C 0.040 3.960 9 C 0.144 3.856 10 N -0.752 5.752 11 C 0.717 3.283 12 O -0.596 6.596 13 N -0.629 5.629 14 C 0.106 3.894 15 C -0.116 4.116 16 C 0.249 3.751 17 O -0.583 6.583 18 C -0.539 4.539 19 H 0.066 0.934 20 C 0.071 3.929 21 N -0.891 5.891 22 Si 0.904 3.096 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.275 1.275 26 C 0.114 3.886 27 H 0.049 0.951 28 H 0.067 0.933 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.028 0.972 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.042 0.958 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.061 0.939 42 H 0.391 0.609 43 H 0.049 0.951 44 H 0.054 0.946 45 H 0.073 0.927 46 H 0.077 0.923 47 H 0.381 0.619 48 H 0.271 0.729 49 H 0.085 0.915 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.393 -0.766 21.290 21.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.155 4.155 3 C -0.028 4.028 4 H 0.101 0.899 5 C -0.247 4.247 6 N -0.251 5.251 7 C -0.130 4.130 8 C -0.088 4.088 9 C 0.019 3.981 10 N -0.410 5.410 11 C 0.419 3.581 12 O -0.475 6.475 13 N -0.366 5.366 14 C -0.018 4.018 15 C -0.154 4.154 16 C 0.208 3.792 17 O -0.391 6.391 18 C -0.577 4.577 19 H 0.084 0.916 20 C -0.132 4.132 21 N -0.530 5.530 22 Si 0.731 3.269 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.201 1.201 26 C -0.008 4.008 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.046 0.954 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.060 0.940 39 H 0.101 0.899 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.224 0.776 43 H 0.067 0.933 44 H 0.073 0.927 45 H 0.092 0.908 46 H 0.095 0.905 47 H 0.231 0.769 48 H 0.081 0.919 49 H 0.103 0.897 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.467 -0.429 21.438 21.902 hybrid contribution 0.985 0.434 -1.023 1.484 sum 5.451 0.004 20.415 21.130 Atomic orbital electron populations 1.21648 0.94963 1.00768 1.02737 1.21614 0.97091 0.94995 1.01774 1.21802 0.92871 0.95634 0.92511 0.89894 1.22494 0.97612 1.02072 1.02542 1.62062 1.57961 1.03378 1.01725 1.22489 0.99310 0.88166 1.03053 1.22331 0.96290 1.00330 0.89835 1.20994 0.97482 0.97527 0.82063 1.45016 1.41149 1.50267 1.04545 1.15472 0.81910 0.81154 0.79578 1.90889 1.32531 1.38832 1.85199 1.47930 1.36531 1.45457 1.06637 1.21919 0.88752 0.91696 0.99432 1.22587 0.99147 1.01444 0.92188 1.19619 0.84614 0.82811 0.92162 1.86098 1.26076 1.42171 1.84782 1.21410 0.96620 1.44940 0.94738 0.91626 1.25085 0.94964 0.93957 0.99235 1.69715 1.01100 1.45281 1.36857 0.86465 0.77714 0.78834 0.83891 1.20036 1.21097 1.20054 1.23120 1.02340 0.99854 0.75493 0.93204 0.91391 0.93480 0.91796 0.91895 0.92040 0.92138 0.92539 0.95388 0.90691 0.91422 0.94028 0.89895 0.91088 0.92034 0.77596 0.93258 0.92719 0.90808 0.90481 0.76916 0.91941 0.89652 0.92558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.72 37.16 0.36 -0.81 16 2 C -0.12 -0.87 5.31 -26.73 -0.14 -1.01 16 3 C 0.08 0.60 2.33 -67.71 -0.16 0.45 16 4 H 0.08 0.60 7.97 -51.93 -0.41 0.19 16 5 C -0.19 -1.29 8.45 37.16 0.31 -0.97 16 6 N -0.53 -4.79 4.15 -234.89 -0.97 -5.76 16 7 C 0.02 0.15 8.94 60.07 0.54 0.69 16 8 C 0.04 0.39 4.01 -3.83 -0.02 0.38 16 9 C 0.14 1.92 5.60 -4.04 -0.02 1.90 16 10 N -0.75 -11.53 5.52 -65.23 -0.36 -11.89 16 11 C 0.72 14.92 8.49 -86.92 -0.74 14.18 16 12 O -0.60 -14.84 16.60 5.29 0.09 -14.75 16 13 N -0.63 -13.21 3.33 -176.24 -0.59 -13.79 16 14 C 0.11 1.84 6.15 -3.05 -0.02 1.82 16 15 C -0.12 -2.28 6.13 -24.89 -0.15 -2.43 16 16 C 0.25 6.02 0.87 -89.64 -0.08 5.94 16 17 O -0.58 -14.89 13.16 -35.23 -0.46 -15.35 16 18 C -0.54 -14.02 8.27 -34.44 -0.28 -14.31 16 19 H 0.07 1.67 7.79 -52.49 -0.41 1.26 16 20 C 0.07 1.86 5.29 -17.82 -0.09 1.77 16 21 N -0.89 -24.00 10.69 55.43 0.59 -23.41 16 22 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 26 C 0.11 2.79 5.38 -2.54 -0.01 2.77 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.67 7.82 -51.93 -0.41 0.26 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.51 6.26 -51.93 -0.33 0.18 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.44 6.55 -51.93 -0.34 0.10 16 34 H 0.06 0.39 6.84 -51.93 -0.36 0.04 16 35 H 0.03 0.23 6.89 -51.93 -0.36 -0.13 16 36 H 0.07 0.71 6.60 -51.93 -0.34 0.37 16 37 H 0.07 0.50 8.00 -51.93 -0.42 0.08 16 38 H 0.04 0.39 6.81 -51.93 -0.35 0.03 16 39 H 0.08 0.78 6.05 -51.93 -0.31 0.47 16 40 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.06 0.87 6.61 -51.93 -0.34 0.53 16 42 H 0.39 4.96 7.46 -40.82 -0.30 4.66 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 46 H 0.08 1.43 8.03 -51.93 -0.42 1.01 16 47 H 0.38 10.04 7.57 45.56 0.34 10.38 16 48 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 49 H 0.09 2.37 7.33 -51.93 -0.38 1.99 16 50 H 0.06 1.43 8.03 -51.93 -0.42 1.01 16 LS Contribution 385.29 15.07 5.81 5.81 Total: -1.00 -30.19 385.29 -9.49 -39.68 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: -8.07 Total: 13.69 kcal Atomic # 6 Polarization: 10.88 SS G_CDS: -0.51 Total: 10.37 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: -1.33 Total: -54.85 kcal Atomic # 8 Polarization: -29.73 SS G_CDS: -0.38 Total: -30.10 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.19 -9.49 -39.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591945083.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.102 kcal (2) G-P(sol) polarization free energy of solvation -30.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds