Wall clock time and date at job start Fri Apr 10 2020 18:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 H 1.08994 * 109.47174 * 57.31118 * 3 2 1 5 5 C 1.52996 * 109.47027 * 177.31592 * 3 2 1 6 6 N 1.46904 * 109.46912 * 297.31233 * 3 2 1 7 7 C 1.46901 * 110.99950 * 169.74373 * 6 3 2 8 8 C 1.46898 * 111.00149 * 293.69424 * 6 3 2 9 9 C 1.52997 * 109.47274 * 169.99860 * 8 6 3 10 10 N 1.46499 * 109.47161 * 180.02562 * 9 8 6 11 11 C 1.34777 * 120.00221 * 180.02562 * 10 9 8 12 12 O 1.21589 * 119.99988 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00400 * 179.97438 * 11 10 9 14 14 C 1.47027 * 125.64566 * 359.69798 * 13 11 10 15 15 C 1.54339 * 107.26345 * 178.84901 * 14 13 11 16 16 C 1.55160 * 103.02027 * 338.13560 * 15 14 13 17 17 O 1.42897 * 111.00355 * 277.23765 * 16 15 14 18 18 C 1.50693 * 111.03401 * 153.39834 * 16 15 14 19 19 H 1.08002 * 120.00138 * 6.33103 * 18 16 15 20 20 C 1.37885 * 120.00054 * 186.33209 * 18 16 15 21 21 N 1.31514 * 119.99452 * 0.02562 * 20 18 16 22 22 Si 1.86797 * 120.00038 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47095 * 60.00337 * 22 20 18 24 24 H 1.48506 * 109.46573 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47319 * 299.99856 * 22 20 18 26 26 C 1.47421 * 125.65208 * 179.97438 * 13 11 10 27 27 H 1.09001 * 109.47098 * 304.58330 * 1 2 3 28 28 H 1.09002 * 109.47036 * 64.58364 * 1 2 3 29 29 H 1.08997 * 109.47359 * 184.57940 * 1 2 3 30 30 H 1.08994 * 109.46860 * 239.99265 * 2 1 3 31 31 H 1.09004 * 109.46794 * 119.99615 * 2 1 3 32 32 H 1.09005 * 109.46909 * 299.99719 * 5 3 2 33 33 H 1.09003 * 109.47480 * 59.99853 * 5 3 2 34 34 H 1.08998 * 109.46988 * 179.97438 * 5 3 2 35 35 H 1.08992 * 109.47344 * 66.60723 * 7 6 3 36 36 H 1.08996 * 109.46819 * 186.60934 * 7 6 3 37 37 H 1.09002 * 109.46661 * 306.61007 * 7 6 3 38 38 H 1.09004 * 109.47524 * 290.00392 * 8 6 3 39 39 H 1.09007 * 109.47000 * 49.99866 * 8 6 3 40 40 H 1.08994 * 109.47314 * 300.00121 * 9 8 6 41 41 H 1.09002 * 109.47037 * 60.00811 * 9 8 6 42 42 H 0.96998 * 120.00146 * 0.02562 * 10 9 8 43 43 H 1.08998 * 109.87963 * 298.38993 * 14 13 11 44 44 H 1.08997 * 109.88358 * 59.55336 * 14 13 11 45 45 H 1.08996 * 110.84398 * 219.67014 * 15 14 13 46 46 H 1.08996 * 110.51501 * 96.45248 * 15 14 13 47 47 H 0.96705 * 114.00091 * 173.65044 * 17 16 15 48 48 H 0.96999 * 119.99460 * 180.02562 * 21 20 18 49 49 H 1.08999 * 110.36557 * 322.93685 * 26 13 11 50 50 H 1.09003 * 110.36698 * 85.14528 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6379 1.9700 0.8648 5 6 3.5685 1.4430 0.0675 6 7 1.6041 2.1159 -1.2306 7 6 1.8620 3.5604 -1.1599 8 6 2.2471 1.5236 -2.4111 9 6 1.5906 2.0730 -3.6791 10 7 2.2316 1.4817 -4.8563 11 6 1.8150 1.8213 -6.0923 12 8 0.9075 2.6186 -6.2304 13 7 2.4050 1.2778 -7.1754 14 6 3.5126 0.3112 -7.1532 15 6 3.8359 -0.0487 -8.6188 16 6 2.5235 0.3103 -9.3645 17 8 1.5705 -0.7498 -9.2634 18 6 2.7968 0.6514 -10.8067 19 1 3.7896 0.5250 -11.2127 20 6 1.7794 1.1249 -11.6079 21 7 0.5706 1.2792 -11.1133 22 14 2.1184 1.5484 -13.3954 23 1 2.6023 0.3385 -14.1076 24 1 0.8684 2.0319 -14.0350 25 1 3.1535 2.6108 -13.4647 26 6 2.0504 1.5582 -8.5785 27 1 -0.3633 0.5833 0.8461 28 1 -0.3633 0.4411 -0.9282 29 1 -0.3634 -1.0243 0.0820 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.8920 0.9432 0.9807 33 1 3.9707 0.9154 -0.7974 34 1 3.9318 2.4706 0.0671 35 1 2.9374 3.7372 -1.1449 36 1 1.4253 4.0504 -2.0301 37 1 1.4145 3.9653 -0.2522 38 1 3.3075 1.7760 -2.4123 39 1 2.1317 0.4400 -2.3824 40 1 0.5303 1.8205 -3.6780 41 1 1.7062 3.1565 -3.7079 42 1 2.9558 0.8459 -4.7463 43 1 4.3856 0.7588 -6.6782 44 1 3.2117 -0.5851 -6.6109 45 1 4.0572 -1.1114 -8.7174 46 1 4.6658 0.5548 -8.9862 47 1 0.7019 -0.5341 -9.6297 48 1 -0.1452 1.6119 -11.6770 49 1 0.9724 1.6841 -8.6795 50 1 2.5702 2.4494 -8.9303 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591945083.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:02 Heat of formation + Delta-G solvation = -99.366430 kcal Electronic energy + Delta-G solvation = -27246.086527 eV Core-core repulsion = 23500.297838 eV Total energy + Delta-G solvation = -3745.788689 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.27025 -39.90146 -39.03284 -36.04994 -35.98577 -34.21800 -33.93217 -31.92555 -30.71654 -29.79224 -29.29863 -27.13570 -26.34493 -24.60710 -23.97807 -23.07557 -21.45896 -21.20622 -20.16880 -19.21647 -18.76769 -17.58775 -17.11338 -16.98598 -16.68805 -16.29074 -16.15349 -15.86446 -15.24581 -15.19400 -14.82598 -14.62687 -14.56905 -14.52179 -14.13391 -13.77571 -13.75547 -13.50507 -13.26875 -13.09628 -12.81670 -12.77564 -12.64908 -12.52344 -12.48525 -12.31874 -12.26136 -12.07729 -12.07312 -11.94149 -11.57101 -11.37758 -11.30912 -11.17062 -10.64730 -10.32182 -10.18709 -9.31732 -9.22344 -8.22853 -6.40378 1.44201 1.44660 1.53087 1.64081 2.15730 2.39351 2.85521 3.03169 3.29418 3.80627 3.82171 3.88159 4.04039 4.10388 4.19937 4.23041 4.27901 4.36068 4.38875 4.54821 4.55889 4.60309 4.63483 4.74307 4.77893 4.79204 4.84709 4.92578 5.01728 5.08604 5.08964 5.10460 5.12104 5.22552 5.27470 5.31540 5.38891 5.40692 5.47169 5.48273 5.57127 5.77351 6.06318 6.08886 6.16375 6.20672 6.66957 7.07220 7.28885 7.36300 7.57832 8.82048 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.027968 B = 0.002536 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.914767 B =11036.975889 C =11163.158858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.115 4.115 3 C 0.082 3.918 4 H 0.088 0.912 5 C -0.184 4.184 6 N -0.540 5.540 7 C 0.019 3.981 8 C 0.055 3.945 9 C 0.147 3.853 10 N -0.728 5.728 11 C 0.710 3.290 12 O -0.646 6.646 13 N -0.634 5.634 14 C 0.107 3.893 15 C -0.110 4.110 16 C 0.232 3.768 17 O -0.587 6.587 18 C -0.556 4.556 19 H 0.070 0.930 20 C 0.025 3.975 21 N -0.916 5.916 22 Si 0.964 3.036 23 H -0.269 1.269 24 H -0.287 1.287 25 H -0.269 1.269 26 C 0.128 3.872 27 H 0.053 0.947 28 H 0.046 0.954 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.035 0.965 36 H 0.059 0.941 37 H 0.078 0.922 38 H 0.055 0.945 39 H 0.091 0.909 40 H 0.049 0.951 41 H 0.052 0.948 42 H 0.409 0.591 43 H 0.091 0.909 44 H 0.074 0.926 45 H 0.086 0.914 46 H 0.089 0.911 47 H 0.372 0.628 48 H 0.268 0.732 49 H 0.042 0.958 50 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.747 -1.661 22.884 24.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.153 4.153 3 C -0.026 4.026 4 H 0.106 0.894 5 C -0.243 4.243 6 N -0.264 5.264 7 C -0.129 4.129 8 C -0.074 4.074 9 C 0.023 3.977 10 N -0.386 5.386 11 C 0.412 3.588 12 O -0.528 6.528 13 N -0.370 5.370 14 C -0.015 4.015 15 C -0.148 4.148 16 C 0.191 3.809 17 O -0.394 6.394 18 C -0.594 4.594 19 H 0.088 0.912 20 C -0.176 4.176 21 N -0.555 5.555 22 Si 0.790 3.210 23 H -0.194 1.194 24 H -0.213 1.213 25 H -0.194 1.194 26 C 0.005 3.995 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.053 0.947 36 H 0.077 0.923 37 H 0.097 0.903 38 H 0.073 0.927 39 H 0.109 0.891 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.245 0.755 43 H 0.109 0.891 44 H 0.092 0.908 45 H 0.105 0.895 46 H 0.107 0.893 47 H 0.221 0.779 48 H 0.078 0.922 49 H 0.061 0.939 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 6.882 -1.367 23.086 24.129 hybrid contribution 0.219 0.715 -1.462 1.642 sum 7.101 -0.652 21.624 22.770 Atomic orbital electron populations 1.21618 0.95768 1.00810 1.01759 1.21618 0.96303 0.95059 1.02312 1.21839 0.93597 0.95494 0.91691 0.89353 1.22447 0.96659 1.02131 1.03042 1.62026 1.58453 1.03776 1.02131 1.22472 0.99709 0.87812 1.02907 1.22161 0.96430 1.00492 0.88270 1.21058 0.96653 0.97161 0.82874 1.44788 1.40951 1.49747 1.03067 1.15716 0.81480 0.80785 0.80838 1.90851 1.34787 1.41081 1.86125 1.47865 1.37584 1.46212 1.05345 1.22135 0.88901 0.91924 0.98565 1.22593 0.96794 1.02538 0.92857 1.19865 0.86290 0.82548 0.92152 1.86089 1.25867 1.42808 1.84675 1.21772 0.96827 1.44874 0.95952 0.91192 1.25858 0.94817 0.93927 1.03044 1.69851 1.01776 1.45904 1.37943 0.85510 0.77433 0.78737 0.79357 1.19376 1.21280 1.19447 1.22652 0.99304 0.99563 0.78032 0.92813 0.93469 0.93188 0.92176 0.90381 0.90910 0.92339 0.92647 0.94693 0.92264 0.90298 0.92707 0.89120 0.93238 0.92947 0.75495 0.89104 0.90785 0.89538 0.89272 0.77938 0.92232 0.93945 0.94368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.72 71.98 0.70 -1.45 16 2 C -0.12 -1.46 5.31 30.59 0.16 -1.29 16 3 C 0.08 1.04 2.33 44.91 0.10 1.15 16 4 H 0.09 1.06 7.97 -2.39 -0.02 1.04 16 5 C -0.18 -1.97 8.45 71.98 0.61 -1.36 16 6 N -0.54 -8.99 4.15 -897.07 -3.72 -12.71 16 7 C 0.02 0.30 8.94 127.69 1.14 1.44 16 8 C 0.05 0.97 4.01 86.30 0.35 1.31 16 9 C 0.15 3.85 5.60 86.38 0.48 4.33 16 10 N -0.73 -21.35 5.52 -478.54 -2.64 -23.99 16 11 C 0.71 29.62 8.49 179.06 1.52 31.14 16 12 O -0.65 -33.35 16.60 -4.00 -0.07 -33.42 16 13 N -0.63 -26.34 3.33 -829.77 -2.76 -29.10 16 14 C 0.11 3.40 6.15 86.73 0.53 3.93 16 15 C -0.11 -4.09 6.13 31.79 0.19 -3.89 16 16 C 0.23 11.25 0.87 -10.16 -0.01 11.24 16 17 O -0.59 -30.34 13.16 -148.98 -1.96 -32.30 16 18 C -0.56 -28.99 8.27 25.60 0.21 -28.78 16 19 H 0.07 3.50 7.79 -2.91 -0.02 3.47 16 20 C 0.02 1.29 5.29 84.66 0.45 1.74 16 21 N -0.92 -50.88 10.69 21.45 0.23 -50.65 16 22 Si 0.96 42.09 29.54 68.60 2.03 44.11 16 23 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 24 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 25 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 26 C 0.13 6.45 5.38 86.85 0.47 6.92 16 27 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.05 0.91 7.82 -2.39 -0.02 0.89 16 29 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.81 6.26 -2.39 -0.01 0.80 16 31 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 33 H 0.06 0.66 6.55 -2.39 -0.02 0.64 16 34 H 0.05 0.62 6.84 -2.39 -0.02 0.60 16 35 H 0.03 0.50 6.89 -2.39 -0.02 0.48 16 36 H 0.06 1.11 6.60 -2.39 -0.02 1.10 16 37 H 0.08 1.04 8.00 -2.39 -0.02 1.03 16 38 H 0.05 0.85 6.81 -2.39 -0.02 0.84 16 39 H 0.09 1.49 6.05 -2.38 -0.01 1.48 16 40 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.05 1.49 6.61 -2.39 -0.02 1.48 16 42 H 0.41 9.14 7.46 -92.71 -0.69 8.45 16 43 H 0.09 2.20 8.14 -2.39 -0.02 2.19 16 44 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 46 H 0.09 3.07 8.03 -2.39 -0.02 3.05 16 47 H 0.37 20.34 7.57 -74.05 -0.56 19.78 16 48 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 49 H 0.04 2.47 7.33 -2.39 -0.02 2.46 16 50 H 0.04 2.01 8.03 -2.39 -0.02 1.99 16 Total: -1.00 -67.82 385.29 -2.30 -70.12 By element: Atomic # 1 Polarization: 41.84 SS G_CDS: -0.32 Total: 41.52 kcal Atomic # 6 Polarization: 19.51 SS G_CDS: 6.91 Total: 26.43 kcal Atomic # 7 Polarization: -107.57 SS G_CDS: -8.89 Total: -116.46 kcal Atomic # 8 Polarization: -63.69 SS G_CDS: -2.03 Total: -65.72 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.11 kcal Total: -67.82 -2.30 -70.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591945083.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.251 kcal (2) G-P(sol) polarization free energy of solvation -67.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds