Wall clock time and date at job start Fri Apr 10 2020 18:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 N 1.41603 * 113.99787 * 2 1 4 4 C 1.46498 * 120.00068 * 275.13897 * 3 2 1 5 5 C 1.34777 * 119.99657 * 95.13113 * 3 2 1 6 6 O 1.21281 * 120.00303 * 5.14998 * 5 3 2 7 7 C 1.50694 * 119.99968 * 185.14047 * 5 3 2 8 8 C 1.53121 * 109.52460 * 156.28814 * 7 5 3 9 9 C 1.53037 * 109.27959 * 177.62374 * 8 7 5 10 10 N 1.46850 * 109.52679 * 300.82421 * 9 8 7 11 11 C 1.46896 * 111.00245 * 185.84023 * 10 9 8 12 12 C 1.50701 * 109.47338 * 169.99990 * 11 10 9 13 13 O 1.21284 * 119.99585 * 0.02562 * 12 11 10 14 14 N 1.34775 * 120.00125 * 179.72244 * 12 11 10 15 15 C 1.46499 * 119.99781 * 180.27409 * 14 12 11 16 16 C 1.50706 * 109.46852 * 179.97438 * 15 14 12 17 17 H 1.08000 * 119.99780 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99708 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00399 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99749 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46889 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47016 * 120.00053 * 20 18 16 23 23 H 1.48491 * 109.47146 * 240.00071 * 20 18 16 24 24 C 1.46846 * 111.19484 * 61.74066 * 10 9 8 25 25 C 1.53043 * 109.52437 * 298.25681 * 24 10 9 26 26 H 1.08994 * 109.47636 * 57.82795 * 1 2 3 27 27 H 1.09008 * 109.46711 * 177.82911 * 1 2 3 28 28 H 1.08999 * 109.46920 * 297.82028 * 1 2 3 29 29 H 1.09004 * 109.46338 * 269.99759 * 4 3 2 30 30 H 1.08992 * 109.47361 * 29.99605 * 4 3 2 31 31 H 1.09002 * 109.47130 * 150.00104 * 4 3 2 32 32 H 1.09002 * 109.52486 * 36.16531 * 7 5 3 33 33 H 1.09004 * 109.49793 * 57.68720 * 8 7 5 34 34 H 1.09000 * 109.50482 * 297.56670 * 8 7 5 35 35 H 1.09001 * 109.46535 * 180.80695 * 9 8 7 36 36 H 1.08999 * 109.45521 * 60.83654 * 9 8 7 37 37 H 1.08995 * 109.46883 * 49.99678 * 11 10 9 38 38 H 1.09006 * 109.46803 * 290.00121 * 11 10 9 39 39 H 0.96993 * 119.99758 * 0.27698 * 14 12 11 40 40 H 1.08994 * 109.47492 * 300.00295 * 15 14 12 41 41 H 1.08998 * 109.47308 * 60.00409 * 15 14 12 42 42 H 0.96995 * 119.99966 * 179.97438 * 19 18 16 43 43 H 1.09001 * 109.46519 * 58.27890 * 24 10 9 44 44 H 1.09008 * 109.46042 * 178.24735 * 24 10 9 45 45 H 1.08991 * 109.50676 * 299.24108 * 25 24 10 46 46 H 1.08999 * 109.49869 * 179.12260 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.1990 2.0090 -1.2636 5 6 2.3744 1.8667 1.1626 6 8 2.3006 1.2398 2.1981 7 6 2.8792 3.2865 1.1757 8 6 2.6711 3.8908 2.5672 9 6 3.2393 5.3116 2.5912 10 7 4.6702 5.2737 2.2633 11 6 5.2797 6.6019 2.4118 12 6 6.7784 6.4812 2.3094 13 8 7.2884 5.3956 2.1298 14 7 7.5515 7.5805 2.4112 15 6 9.0081 7.4639 2.3056 16 6 9.6330 8.8274 2.4518 17 1 9.0078 9.6940 2.6083 18 6 11.0030 8.9685 2.3859 19 7 11.7644 7.9131 2.1959 20 14 11.7777 10.6585 2.5679 21 1 10.7119 11.6721 2.7728 22 1 12.6930 10.6601 3.7372 23 1 12.5440 10.9867 1.3391 24 6 4.8915 4.7411 0.9129 25 6 4.3728 3.3031 0.8388 26 1 -0.3634 0.5471 -0.8698 27 1 -0.3633 -1.0270 -0.0389 28 1 -0.3633 0.4796 0.9089 29 1 3.1823 1.7701 -1.6689 30 1 1.4299 1.7067 -1.9742 31 1 2.1295 3.0825 -1.0877 32 1 2.3329 3.8743 0.4380 33 1 3.1857 3.2806 3.3095 34 1 1.6057 3.9210 2.7953 35 1 3.1056 5.7395 3.5847 36 1 2.7149 5.9247 1.8582 37 1 5.0142 7.0168 3.3842 38 1 4.9134 7.2599 1.6238 39 1 7.1436 8.4487 2.5545 40 1 9.3782 6.8078 3.0933 41 1 9.2696 7.0472 1.3329 42 1 12.7281 8.0125 2.1492 43 1 4.3594 5.3570 0.1878 44 1 5.9579 4.7545 0.6874 45 1 4.9140 2.6837 1.5538 46 1 4.5231 2.9136 -0.1681 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812873388.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:07 Heat of formation + Delta-G solvation = -58.718570 kcal Electronic energy + Delta-G solvation = -26362.944890 eV Core-core repulsion = 22483.085730 eV Total energy + Delta-G solvation = -3879.859160 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.57945 -39.27249 -37.96449 -37.13536 -34.53746 -34.12337 -33.04391 -32.30606 -30.92337 -28.57158 -27.73629 -26.93295 -26.13155 -23.99322 -23.28952 -22.26655 -20.78728 -19.64043 -19.51684 -17.91166 -17.40178 -17.08328 -16.41361 -16.17492 -15.67367 -15.33354 -15.07545 -14.89031 -14.59762 -14.50735 -14.30102 -13.99801 -13.89103 -13.62974 -13.43516 -13.06883 -12.85766 -12.65150 -12.47023 -12.38165 -12.06020 -11.87394 -11.58334 -11.39994 -11.24833 -10.95782 -10.92445 -10.90783 -10.78471 -10.56707 -10.30710 -9.88845 -9.37809 -9.30198 -8.98637 -8.73553 -8.21909 -7.84664 -6.16895 -4.23771 1.47411 2.27101 3.22971 3.30024 3.32890 3.39290 3.64071 3.99385 4.16510 4.23708 4.38858 4.50879 4.57134 4.66960 4.77108 4.87761 4.89324 5.00355 5.08232 5.15052 5.19145 5.19360 5.21230 5.26153 5.35935 5.44366 5.50800 5.55656 5.62415 5.68804 5.77242 6.08389 6.12772 6.23931 6.40131 6.82834 6.97632 7.12702 7.33383 7.46090 7.52863 7.67900 7.86280 7.97375 8.64475 8.79512 9.13587 9.43174 10.93283 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.036719 B = 0.002163 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.354855 B =12944.552762 C =13245.751029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.002 4.002 2 O -0.140 6.140 3 N -0.490 5.490 4 C 0.075 3.925 5 C 0.524 3.476 6 O -0.514 6.514 7 C -0.099 4.099 8 C -0.098 4.098 9 C 0.058 3.942 10 N -0.520 5.520 11 C 0.036 3.964 12 C 0.498 3.502 13 O -0.538 6.538 14 N -0.715 5.715 15 C 0.251 3.749 16 C -0.543 4.543 17 H 0.063 0.937 18 C 0.063 3.937 19 N -0.885 5.885 20 Si 0.903 3.097 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 C 0.054 3.946 25 C -0.103 4.103 26 H 0.050 0.950 27 H 0.105 0.895 28 H 0.051 0.949 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.033 0.967 37 H 0.099 0.901 38 H 0.058 0.942 39 H 0.389 0.611 40 H 0.027 0.973 41 H 0.026 0.974 42 H 0.265 0.735 43 H 0.028 0.972 44 H 0.106 0.894 45 H 0.085 0.915 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.069 -7.158 -7.104 27.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 O -0.143 6.143 3 N -0.271 5.271 4 C -0.066 4.066 5 C 0.313 3.687 6 O -0.387 6.387 7 C -0.121 4.121 8 C -0.136 4.136 9 C -0.070 4.070 10 N -0.245 5.245 11 C -0.095 4.095 12 C 0.282 3.718 13 O -0.416 6.416 14 N -0.364 5.364 15 C 0.130 3.870 16 C -0.581 4.581 17 H 0.081 0.919 18 C -0.141 4.141 19 N -0.522 5.522 20 Si 0.731 3.269 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.074 4.074 25 C -0.141 4.141 26 H 0.069 0.931 27 H 0.123 0.877 28 H 0.070 0.930 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.105 0.895 32 H 0.110 0.890 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.051 0.949 37 H 0.117 0.883 38 H 0.075 0.925 39 H 0.222 0.778 40 H 0.045 0.955 41 H 0.044 0.956 42 H 0.075 0.925 43 H 0.046 0.954 44 H 0.124 0.876 45 H 0.103 0.897 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -24.173 -8.848 -6.352 26.513 hybrid contribution -0.482 1.832 -0.604 1.988 sum -24.655 -7.016 -6.956 26.561 Atomic orbital electron populations 1.23303 0.81986 1.03737 1.01004 1.90696 1.19778 1.07075 1.96708 1.50037 1.59474 1.10089 1.07513 1.22160 1.03020 0.96551 0.84836 1.21237 0.76889 0.88485 0.82076 1.90725 1.52527 1.63698 1.31750 1.21541 0.98981 0.90698 1.00844 1.21476 1.00974 0.95955 0.95235 1.22108 0.87598 0.96150 1.01146 1.61516 1.12343 1.22792 1.27804 1.21996 0.93987 0.90624 1.02889 1.20303 0.88318 0.85102 0.78117 1.90634 1.75060 1.26819 1.49044 1.46458 1.10058 1.08471 1.71460 1.19082 0.72948 0.97372 0.97569 1.21271 0.92146 0.92939 1.51771 0.91874 1.24960 0.97053 0.97312 0.94764 1.69982 1.05108 1.28943 1.48187 0.86366 0.79281 0.83465 0.77817 1.19661 1.20799 1.20830 1.22261 1.03685 0.93593 0.87844 1.21562 0.91727 0.98424 1.02429 0.93089 0.87712 0.93014 0.91047 0.90486 0.89478 0.88978 0.89282 0.91224 0.90044 0.94922 0.88258 0.92451 0.77850 0.95523 0.95630 0.92501 0.95413 0.87585 0.89680 0.90956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.02 11.45 101.05 1.16 1.14 16 2 O -0.14 -1.57 11.19 -29.60 -0.33 -1.90 16 3 N -0.49 -4.96 3.36 -67.08 -0.23 -5.19 16 4 C 0.08 0.43 10.01 59.85 0.60 1.03 16 5 C 0.52 6.33 6.95 -10.99 -0.08 6.25 16 6 O -0.51 -8.36 16.45 -12.57 -0.21 -8.56 16 7 C -0.10 -0.96 1.83 -91.65 -0.17 -1.12 16 8 C -0.10 -1.01 4.94 -26.65 -0.13 -1.15 16 9 C 0.06 0.58 5.46 -3.83 -0.02 0.56 16 10 N -0.52 -6.94 4.40 -236.11 -1.04 -7.98 16 11 C 0.04 0.49 5.45 -4.98 -0.03 0.46 16 12 C 0.50 9.53 7.50 -10.99 -0.08 9.44 16 13 O -0.54 -12.49 14.32 5.55 0.08 -12.41 16 14 N -0.72 -14.57 5.55 -61.47 -0.34 -14.91 16 15 C 0.25 6.56 5.43 -5.19 -0.03 6.53 16 16 C -0.54 -14.57 9.28 -34.44 -0.32 -14.89 16 17 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 18 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 19 N -0.88 -25.96 13.29 55.43 0.74 -25.22 16 20 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 21 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 C 0.05 0.68 5.11 -3.83 -0.02 0.66 16 25 C -0.10 -1.16 5.30 -26.65 -0.14 -1.30 16 26 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.10 0.54 8.14 -51.92 -0.42 0.12 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.39 7.93 -51.93 -0.41 -0.02 16 30 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.09 0.35 5.84 -51.93 -0.30 0.04 16 32 H 0.09 0.63 6.27 -51.93 -0.33 0.31 16 33 H 0.09 1.15 7.80 -51.93 -0.40 0.75 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.75 8.02 -51.93 -0.42 0.33 16 36 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.10 1.15 7.99 -51.93 -0.41 0.73 16 38 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 39 H 0.39 6.71 8.32 -40.82 -0.34 6.37 16 40 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 43 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 44 H 0.11 1.72 5.78 -51.92 -0.30 1.42 16 45 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 46 H 0.07 0.67 7.27 -51.93 -0.38 0.29 16 LS Contribution 374.22 15.07 5.64 5.64 Total: -1.00 -35.97 374.22 -7.54 -43.51 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -7.48 Total: 2.11 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: 0.64 Total: 9.26 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: -0.87 Total: -53.30 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -0.46 Total: -22.88 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.97 -7.54 -43.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812873388.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.208 kcal (2) G-P(sol) polarization free energy of solvation -35.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds