Wall clock time and date at job start Fri Apr 10 2020 18:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 N 1.41603 * 113.99787 * 2 1 4 4 C 1.46498 * 120.00068 * 275.13897 * 3 2 1 5 5 C 1.34777 * 119.99657 * 95.13113 * 3 2 1 6 6 O 1.21281 * 120.00303 * 5.14998 * 5 3 2 7 7 C 1.50694 * 119.99968 * 185.14047 * 5 3 2 8 8 C 1.53121 * 109.52460 * 156.28814 * 7 5 3 9 9 C 1.53037 * 109.27959 * 177.62374 * 8 7 5 10 10 N 1.46850 * 109.52679 * 300.82421 * 9 8 7 11 11 C 1.46896 * 111.00245 * 185.84023 * 10 9 8 12 12 C 1.50701 * 109.47338 * 169.99990 * 11 10 9 13 13 O 1.21284 * 119.99585 * 0.02562 * 12 11 10 14 14 N 1.34775 * 120.00125 * 179.72244 * 12 11 10 15 15 C 1.46499 * 119.99781 * 180.27409 * 14 12 11 16 16 C 1.50706 * 109.46852 * 179.97438 * 15 14 12 17 17 H 1.08000 * 119.99780 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99708 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00399 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99749 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46889 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47016 * 120.00053 * 20 18 16 23 23 H 1.48491 * 109.47146 * 240.00071 * 20 18 16 24 24 C 1.46846 * 111.19484 * 61.74066 * 10 9 8 25 25 C 1.53043 * 109.52437 * 298.25681 * 24 10 9 26 26 H 1.08994 * 109.47636 * 57.82795 * 1 2 3 27 27 H 1.09008 * 109.46711 * 177.82911 * 1 2 3 28 28 H 1.08999 * 109.46920 * 297.82028 * 1 2 3 29 29 H 1.09004 * 109.46338 * 269.99759 * 4 3 2 30 30 H 1.08992 * 109.47361 * 29.99605 * 4 3 2 31 31 H 1.09002 * 109.47130 * 150.00104 * 4 3 2 32 32 H 1.09002 * 109.52486 * 36.16531 * 7 5 3 33 33 H 1.09004 * 109.49793 * 57.68720 * 8 7 5 34 34 H 1.09000 * 109.50482 * 297.56670 * 8 7 5 35 35 H 1.09001 * 109.46535 * 180.80695 * 9 8 7 36 36 H 1.08999 * 109.45521 * 60.83654 * 9 8 7 37 37 H 1.08995 * 109.46883 * 49.99678 * 11 10 9 38 38 H 1.09006 * 109.46803 * 290.00121 * 11 10 9 39 39 H 0.96993 * 119.99758 * 0.27698 * 14 12 11 40 40 H 1.08994 * 109.47492 * 300.00295 * 15 14 12 41 41 H 1.08998 * 109.47308 * 60.00409 * 15 14 12 42 42 H 0.96995 * 119.99966 * 179.97438 * 19 18 16 43 43 H 1.09001 * 109.46519 * 58.27890 * 24 10 9 44 44 H 1.09008 * 109.46042 * 178.24735 * 24 10 9 45 45 H 1.08991 * 109.50676 * 299.24108 * 25 24 10 46 46 H 1.08999 * 109.49869 * 179.12260 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.1990 2.0090 -1.2636 5 6 2.3744 1.8667 1.1626 6 8 2.3006 1.2398 2.1981 7 6 2.8792 3.2865 1.1757 8 6 2.6711 3.8908 2.5672 9 6 3.2393 5.3116 2.5912 10 7 4.6702 5.2737 2.2633 11 6 5.2797 6.6019 2.4118 12 6 6.7784 6.4812 2.3094 13 8 7.2884 5.3956 2.1298 14 7 7.5515 7.5805 2.4112 15 6 9.0081 7.4639 2.3056 16 6 9.6330 8.8274 2.4518 17 1 9.0078 9.6940 2.6083 18 6 11.0030 8.9685 2.3859 19 7 11.7644 7.9131 2.1959 20 14 11.7777 10.6585 2.5679 21 1 10.7119 11.6721 2.7728 22 1 12.6930 10.6601 3.7372 23 1 12.5440 10.9867 1.3391 24 6 4.8915 4.7411 0.9129 25 6 4.3728 3.3031 0.8388 26 1 -0.3634 0.5471 -0.8698 27 1 -0.3633 -1.0270 -0.0389 28 1 -0.3633 0.4796 0.9089 29 1 3.1823 1.7701 -1.6689 30 1 1.4299 1.7067 -1.9742 31 1 2.1295 3.0825 -1.0877 32 1 2.3329 3.8743 0.4380 33 1 3.1857 3.2806 3.3095 34 1 1.6057 3.9210 2.7953 35 1 3.1056 5.7395 3.5847 36 1 2.7149 5.9247 1.8582 37 1 5.0142 7.0168 3.3842 38 1 4.9134 7.2599 1.6238 39 1 7.1436 8.4487 2.5545 40 1 9.3782 6.8078 3.0933 41 1 9.2696 7.0472 1.3329 42 1 12.7281 8.0125 2.1492 43 1 4.3594 5.3570 0.1878 44 1 5.9579 4.7545 0.6874 45 1 4.9140 2.6837 1.5538 46 1 4.5231 2.9136 -0.1681 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812873388.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:05 Heat of formation + Delta-G solvation = -86.759791 kcal Electronic energy + Delta-G solvation = -26364.160849 eV Core-core repulsion = 22483.085730 eV Total energy + Delta-G solvation = -3881.075118 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.48222 -40.59680 -39.04824 -38.05506 -36.08323 -35.32834 -34.32125 -33.88656 -31.79254 -30.09475 -28.35259 -28.25005 -27.02386 -25.22206 -24.16407 -23.98660 -21.65377 -21.26429 -20.33137 -18.89672 -18.69320 -18.15009 -17.46434 -17.31407 -17.12230 -16.62635 -16.50000 -15.98266 -15.69369 -15.53863 -15.34952 -15.14061 -14.99026 -14.45700 -14.29691 -14.16314 -14.07963 -13.89456 -13.74162 -13.41962 -13.04113 -13.01107 -12.86945 -12.79511 -12.67829 -12.45020 -12.20428 -12.11442 -11.64987 -11.59698 -11.49202 -11.42337 -10.82049 -10.79121 -10.52144 -10.05479 -9.74876 -9.14320 -8.27439 -6.43841 0.77450 1.37688 1.44326 1.45521 1.58903 1.87827 2.30939 2.50670 3.07526 3.10381 3.24448 3.51050 3.73212 3.76424 4.01836 4.05144 4.24253 4.29705 4.31483 4.33579 4.39017 4.43116 4.48932 4.53246 4.58497 4.64572 4.66364 4.73572 4.84467 4.87972 4.99950 5.10024 5.15700 5.18390 5.28107 5.36358 5.53111 5.70229 5.75376 5.88270 6.05205 6.07760 6.25763 6.68641 7.01956 7.02443 7.26219 7.61197 8.84892 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.036719 B = 0.002163 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.354855 B =12944.552762 C =13245.751029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.003 4.003 2 O -0.175 6.175 3 N -0.487 5.487 4 C 0.065 3.935 5 C 0.518 3.482 6 O -0.571 6.571 7 C -0.087 4.087 8 C -0.097 4.097 9 C 0.064 3.936 10 N -0.552 5.552 11 C 0.052 3.948 12 C 0.492 3.508 13 O -0.586 6.586 14 N -0.711 5.711 15 C 0.269 3.731 16 C -0.553 4.553 17 H 0.085 0.915 18 C 0.001 3.999 19 N -0.932 5.932 20 Si 0.985 3.015 21 H -0.251 1.251 22 H -0.281 1.281 23 H -0.279 1.279 24 C 0.058 3.942 25 C -0.097 4.097 26 H 0.075 0.925 27 H 0.122 0.878 28 H 0.039 0.961 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.113 0.887 32 H 0.136 0.864 33 H 0.050 0.950 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.067 0.933 37 H 0.126 0.874 38 H 0.094 0.906 39 H 0.408 0.592 40 H -0.018 1.018 41 H -0.014 1.014 42 H 0.268 0.732 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.042 0.958 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.932 -4.159 -8.388 29.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 O -0.177 6.177 3 N -0.267 5.267 4 C -0.074 4.074 5 C 0.309 3.691 6 O -0.448 6.448 7 C -0.108 4.108 8 C -0.136 4.136 9 C -0.063 4.063 10 N -0.278 5.278 11 C -0.078 4.078 12 C 0.279 3.721 13 O -0.467 6.467 14 N -0.362 5.362 15 C 0.145 3.855 16 C -0.591 4.591 17 H 0.104 0.896 18 C -0.199 4.199 19 N -0.571 5.571 20 Si 0.808 3.192 21 H -0.174 1.174 22 H -0.207 1.207 23 H -0.205 1.205 24 C -0.070 4.070 25 C -0.135 4.135 26 H 0.094 0.906 27 H 0.140 0.860 28 H 0.057 0.943 29 H 0.092 0.908 30 H 0.117 0.883 31 H 0.131 0.869 32 H 0.154 0.846 33 H 0.069 0.931 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.085 0.915 37 H 0.144 0.856 38 H 0.111 0.889 39 H 0.244 0.756 40 H 0.000 1.000 41 H 0.004 0.996 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.061 0.939 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -27.109 -5.826 -7.675 28.770 hybrid contribution 0.373 0.763 -0.254 0.886 sum -26.736 -5.063 -7.929 28.343 Atomic orbital electron populations 1.23472 0.79911 1.05213 1.01460 1.90630 1.22044 1.08198 1.96857 1.50228 1.58516 1.09576 1.08428 1.22519 1.04019 0.97505 0.83358 1.21707 0.76332 0.89195 0.81902 1.90697 1.55077 1.65114 1.33900 1.21522 0.97817 0.89768 1.01706 1.21452 1.01606 0.95868 0.94654 1.22151 0.85391 0.96058 1.02720 1.61407 1.14869 1.23017 1.28488 1.21910 0.88657 0.91628 1.05617 1.21484 0.90988 0.83659 0.76007 1.90627 1.76642 1.28708 1.50677 1.46183 1.07783 1.10189 1.72010 1.18473 0.76638 0.96540 0.93804 1.21678 0.92785 0.93442 1.51213 0.89650 1.26091 0.97813 1.01880 0.94071 1.70151 1.05556 1.31927 1.49454 0.85107 0.78426 0.78044 0.77600 1.17440 1.20707 1.20490 1.22123 1.01510 0.94747 0.88617 1.21456 0.92539 0.97167 1.02352 0.90608 0.85970 0.94260 0.90796 0.88321 0.86935 0.84627 0.93111 0.89398 0.89020 0.91532 0.85581 0.88855 0.75618 0.99988 0.99563 0.92345 0.91990 0.91916 0.93937 0.89015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.04 11.45 113.37 1.30 1.25 16 2 O -0.17 -3.84 11.19 -21.46 -0.24 -4.08 16 3 N -0.49 -9.25 3.36 -484.53 -1.63 -10.88 16 4 C 0.06 0.55 10.01 127.77 1.28 1.83 16 5 C 0.52 12.32 6.95 87.66 0.61 12.93 16 6 O -0.57 -19.40 16.45 14.30 0.24 -19.16 16 7 C -0.09 -1.51 1.83 -11.46 -0.02 -1.53 16 8 C -0.10 -1.86 4.94 30.65 0.15 -1.71 16 9 C 0.06 1.05 5.46 86.33 0.47 1.52 16 10 N -0.55 -13.77 4.40 -900.90 -3.96 -17.73 16 11 C 0.05 1.27 5.45 85.56 0.47 1.73 16 12 C 0.49 18.91 7.50 87.66 0.66 19.57 16 13 O -0.59 -28.68 14.32 -3.04 -0.04 -28.72 16 14 N -0.71 -29.05 5.55 -466.79 -2.59 -31.64 16 15 C 0.27 14.67 5.43 85.63 0.46 15.14 16 16 C -0.55 -29.83 9.28 25.60 0.24 -29.59 16 17 H 0.09 4.12 7.60 -2.91 -0.02 4.10 16 18 C 0.00 0.04 5.46 84.65 0.46 0.50 16 19 N -0.93 -56.45 13.29 21.45 0.28 -56.16 16 20 Si 0.98 42.07 29.54 68.60 2.03 44.10 16 21 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 22 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 23 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 24 C 0.06 1.39 5.11 86.33 0.44 1.83 16 25 C -0.10 -2.13 5.30 30.65 0.16 -1.97 16 26 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.12 1.10 8.14 -2.38 -0.02 1.08 16 28 H 0.04 0.60 8.14 -2.39 -0.02 0.59 16 29 H 0.07 0.62 7.93 -2.39 -0.02 0.60 16 30 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.11 0.36 5.84 -2.39 -0.01 0.35 16 32 H 0.14 1.18 6.27 -2.39 -0.01 1.17 16 33 H 0.05 1.37 7.80 -2.38 -0.02 1.35 16 34 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.09 1.35 8.02 -2.39 -0.02 1.33 16 36 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.13 2.43 7.99 -2.39 -0.02 2.41 16 38 H 0.09 1.66 8.12 -2.38 -0.02 1.64 16 39 H 0.41 13.39 8.32 -92.71 -0.77 12.62 16 40 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 41 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 42 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 43 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.06 2.09 5.78 -2.38 -0.01 2.08 16 45 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.09 1.60 7.27 -2.39 -0.02 1.58 16 Total: -1.00 -86.48 374.22 0.97 -85.51 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: 0.21 Total: 17.27 kcal Atomic # 6 Polarization: 14.82 SS G_CDS: 6.68 Total: 21.50 kcal Atomic # 7 Polarization: -108.52 SS G_CDS: -7.89 Total: -116.41 kcal Atomic # 8 Polarization: -51.92 SS G_CDS: -0.05 Total: -51.97 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -86.48 0.97 -85.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812873388.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.252 kcal (2) G-P(sol) polarization free energy of solvation -86.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds