Wall clock time and date at job start Fri Apr 10 2020 18:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 N 1.41603 * 114.00074 * 2 1 4 4 C 1.46501 * 120.00394 * 270.00362 * 3 2 1 5 5 C 1.34779 * 119.99793 * 89.99932 * 3 2 1 6 6 O 1.21279 * 120.00130 * 179.97438 * 5 3 2 7 7 C 1.50707 * 119.99685 * 0.02562 * 5 3 2 8 8 C 1.53043 * 109.45274 * 179.97438 * 7 5 3 9 9 C 1.53200 * 109.30838 * 178.62732 * 8 7 5 10 10 N 1.46924 * 108.77654 * 54.63417 * 9 8 7 11 11 C 1.34774 * 120.63429 * 126.36713 * 10 9 8 12 12 O 1.21586 * 120.00512 * 185.22731 * 11 10 9 13 13 N 1.34784 * 119.99579 * 5.23244 * 11 10 9 14 14 C 1.46495 * 119.99802 * 175.01574 * 13 11 10 15 15 C 1.52999 * 109.47231 * 179.97438 * 14 13 11 16 16 C 1.50694 * 109.47412 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00232 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00250 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99891 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00458 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47327 * 90.00150 * 20 18 16 22 22 H 1.48497 * 109.47817 * 210.00390 * 20 18 16 23 23 H 1.48506 * 109.47176 * 330.00367 * 20 18 16 24 24 C 1.46930 * 118.73918 * 306.64490 * 10 9 8 25 25 C 1.52767 * 109.00782 * 53.30524 * 24 10 9 26 26 H 1.09001 * 109.47015 * 59.99337 * 1 2 3 27 27 H 1.08990 * 109.47258 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46941 * 299.99806 * 1 2 3 29 29 H 1.08997 * 109.46984 * 270.00202 * 4 3 2 30 30 H 1.09004 * 109.46808 * 29.99585 * 4 3 2 31 31 H 1.08995 * 109.47198 * 149.99722 * 4 3 2 32 32 H 1.08995 * 109.45697 * 299.96818 * 7 5 3 33 33 H 1.08998 * 109.50039 * 58.67568 * 8 7 5 34 34 H 1.08993 * 109.52537 * 298.58979 * 8 7 5 35 35 H 1.08998 * 109.58191 * 294.84735 * 9 8 7 36 36 H 1.09000 * 109.70456 * 174.49344 * 9 8 7 37 37 H 0.97001 * 119.99741 * 355.00924 * 13 11 10 38 38 H 1.09001 * 109.47126 * 59.99487 * 14 13 11 39 39 H 1.09000 * 109.47373 * 299.99273 * 14 13 11 40 40 H 1.09006 * 109.47073 * 300.00452 * 15 14 13 41 41 H 1.09003 * 109.46699 * 59.99584 * 15 14 13 42 42 H 0.97003 * 120.00049 * 179.97438 * 19 18 16 43 43 H 1.08993 * 109.58889 * 173.14535 * 24 10 9 44 44 H 1.09001 * 109.58692 * 293.57275 * 24 10 9 45 45 H 1.08993 * 109.56435 * 185.55251 * 25 24 10 46 46 H 1.09005 * 109.38001 * 65.52056 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0050 1.2936 0.0000 4 6 2.3029 1.9629 -1.2687 5 6 2.2791 1.9092 1.1672 6 8 2.7728 3.0169 1.1673 7 6 1.9731 1.2205 2.4723 8 6 2.3782 2.1291 3.6354 9 6 2.0342 1.4403 4.9598 10 7 2.6665 0.1142 4.9814 11 6 3.4614 -0.2510 6.0067 12 8 4.0543 -1.3118 5.9684 13 7 3.5991 0.5598 7.0745 14 6 4.3746 0.1165 8.2356 15 6 4.3744 1.2164 9.2992 16 6 5.1716 0.7602 10.4938 17 1 5.6327 -0.2164 10.4944 18 6 5.3132 1.5899 11.5858 19 7 4.7521 2.7794 11.5850 20 14 6.3008 1.0242 13.0670 21 1 7.7218 1.4196 12.8949 22 1 5.7566 1.6561 14.2957 23 1 6.2093 -0.4531 13.1881 24 6 2.4206 -0.8040 3.8611 25 6 2.7558 -0.0921 2.5516 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.3156 1.7108 -1.5834 30 1 1.5939 1.6337 -2.0283 31 1 2.2209 3.0419 -1.1383 32 1 0.9051 1.0102 2.5302 33 1 1.8376 3.0729 3.5650 34 1 3.4504 2.3197 3.5923 35 1 0.9530 1.3310 5.0448 36 1 2.4077 2.0368 5.7922 37 1 3.1847 1.4369 7.0741 38 1 5.3997 -0.0924 7.9296 39 1 3.9270 -0.7878 8.6478 40 1 4.8222 2.1207 8.8868 41 1 3.3493 1.4257 9.6052 42 1 4.8515 3.3630 12.3534 43 1 3.0509 -1.6869 3.9671 44 1 1.3716 -1.1000 3.8546 45 1 2.4841 -0.7291 1.7100 46 1 3.8247 0.1189 2.5179 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813135368.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:10 Heat of formation + Delta-G solvation = -57.756373 kcal Electronic energy + Delta-G solvation = -26620.461461 eV Core-core repulsion = 22740.644025 eV Total energy + Delta-G solvation = -3879.817436 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.79724 -39.76470 -37.88714 -37.17339 -34.85199 -33.46701 -33.27214 -32.61225 -31.21358 -29.44985 -28.09781 -27.17291 -25.41754 -24.46588 -23.26615 -21.73503 -20.96933 -20.52662 -19.39205 -18.32263 -17.70568 -17.10895 -16.54389 -16.39444 -15.77538 -15.41749 -15.29348 -14.86287 -14.79051 -14.46963 -14.27612 -14.10120 -13.78446 -13.63456 -13.41687 -13.23341 -13.02719 -12.64630 -12.48925 -12.35555 -12.24026 -12.04017 -11.44490 -11.32821 -11.10667 -11.00721 -10.89556 -10.74453 -10.59882 -10.28879 -10.09930 -9.84111 -9.50398 -9.49543 -9.22833 -8.70962 -8.43085 -8.15286 -6.06251 -4.08658 1.40997 2.10265 2.92490 3.32053 3.38025 3.42504 3.45266 3.60826 4.23988 4.39093 4.46690 4.50862 4.56509 4.65709 4.69632 4.79219 4.89068 4.92101 4.99729 5.09679 5.15119 5.24718 5.27431 5.30856 5.46167 5.47844 5.65104 5.68995 5.82256 5.88569 5.93381 6.11054 6.31359 6.44200 6.63711 6.81429 6.90184 7.04608 7.20799 7.59287 7.61764 7.66881 7.93054 8.28279 8.41163 8.95723 9.02254 9.55901 11.05457 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.031178 B = 0.002329 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.850941 B =12021.791964 C =12491.697905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 O -0.138 6.138 3 N -0.484 5.484 4 C 0.085 3.915 5 C 0.529 3.471 6 O -0.518 6.518 7 C -0.098 4.098 8 C -0.117 4.117 9 C 0.113 3.887 10 N -0.636 5.636 11 C 0.703 3.297 12 O -0.596 6.596 13 N -0.739 5.739 14 C 0.139 3.861 15 C 0.013 3.987 16 C -0.519 4.519 17 H 0.060 0.940 18 C 0.058 3.942 19 N -0.895 5.895 20 Si 0.897 3.103 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.273 1.273 24 C 0.134 3.866 25 C -0.126 4.126 26 H 0.053 0.947 27 H 0.110 0.890 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.392 0.608 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.022 0.978 41 H 0.022 0.978 42 H 0.262 0.738 43 H 0.098 0.902 44 H 0.062 0.938 45 H 0.092 0.908 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.815 -2.302 -26.745 29.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 O -0.142 6.142 3 N -0.264 5.264 4 C -0.056 4.056 5 C 0.319 3.681 6 O -0.393 6.393 7 C -0.119 4.119 8 C -0.156 4.156 9 C -0.011 4.011 10 N -0.376 5.376 11 C 0.405 3.595 12 O -0.475 6.475 13 N -0.394 5.394 14 C 0.016 3.984 15 C -0.025 4.025 16 C -0.558 4.558 17 H 0.078 0.922 18 C -0.143 4.143 19 N -0.534 5.534 20 Si 0.725 3.275 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.197 1.197 24 C 0.010 3.990 25 C -0.165 4.165 26 H 0.072 0.928 27 H 0.128 0.872 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.106 0.894 32 H 0.114 0.886 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.228 0.772 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.040 0.960 41 H 0.040 0.960 42 H 0.071 0.929 43 H 0.116 0.884 44 H 0.080 0.920 45 H 0.111 0.889 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.003 -2.509 -26.608 29.298 hybrid contribution -0.133 0.298 0.636 0.715 sum -12.136 -2.211 -25.972 28.753 Atomic orbital electron populations 1.23432 0.81599 1.04227 1.01474 1.90659 1.20125 1.06776 1.96651 1.50047 1.59233 1.10308 1.06846 1.21905 1.01746 0.98012 0.83906 1.20988 0.77262 0.85039 0.84775 1.90769 1.43509 1.18986 1.85995 1.21286 1.02126 0.97054 0.91480 1.21808 1.03585 0.97833 0.92363 1.21610 0.97898 0.83766 0.97815 1.47307 1.51690 1.16385 1.22168 1.15960 0.79529 0.84050 0.79986 1.90870 1.51106 1.24700 1.80830 1.45713 1.57243 1.19272 1.17200 1.21595 0.93856 0.99235 0.83686 1.19322 0.97863 0.93081 0.92186 1.21050 1.32466 1.02061 1.00250 0.92217 1.24998 0.95772 0.94878 0.98697 1.69959 1.44235 1.08433 1.30741 0.86509 0.80166 0.78958 0.81897 1.20573 1.21211 1.19731 1.21266 1.01009 0.93133 0.83547 1.21949 1.00748 0.94830 0.98951 0.92810 0.87201 0.92697 0.91526 0.90600 0.89420 0.88560 0.89934 0.90348 0.91340 0.89560 0.77207 0.92733 0.92847 0.95987 0.96014 0.92885 0.88412 0.91960 0.88937 0.91056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.04 11.44 101.05 1.16 1.12 16 2 O -0.14 -0.96 8.78 -11.47 -0.10 -1.06 16 3 N -0.48 -4.03 3.34 -67.08 -0.22 -4.26 16 4 C 0.08 0.53 10.82 59.85 0.65 1.18 16 5 C 0.53 5.49 7.11 -10.98 -0.08 5.42 16 6 O -0.52 -6.98 15.56 5.56 0.09 -6.90 16 7 C -0.10 -0.89 2.08 -91.73 -0.19 -1.08 16 8 C -0.12 -1.19 4.65 -26.61 -0.12 -1.31 16 9 C 0.11 1.19 6.39 -3.71 -0.02 1.17 16 10 N -0.64 -8.64 2.98 -178.75 -0.53 -9.17 16 11 C 0.70 12.86 8.30 -86.91 -0.72 12.14 16 12 O -0.60 -13.10 15.77 5.29 0.08 -13.02 16 13 N -0.74 -13.67 5.47 -65.23 -0.36 -14.03 16 14 C 0.14 3.07 5.62 -4.05 -0.02 3.05 16 15 C 0.01 0.33 5.09 -27.89 -0.14 0.19 16 16 C -0.52 -14.60 9.11 -34.44 -0.31 -14.92 16 17 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -26.36 13.29 55.43 0.74 -25.63 16 20 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 23 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 24 C 0.13 1.50 6.41 -3.93 -0.03 1.47 16 25 C -0.13 -1.21 5.20 -26.83 -0.14 -1.35 16 26 H 0.05 0.17 8.14 -51.93 -0.42 -0.25 16 27 H 0.11 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.05 0.21 7.13 -51.93 -0.37 -0.16 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.09 0.59 7.42 -51.93 -0.39 0.21 16 32 H 0.10 0.68 7.13 -51.93 -0.37 0.31 16 33 H 0.08 0.77 8.07 -51.93 -0.42 0.36 16 34 H 0.08 0.96 8.13 -51.93 -0.42 0.54 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.09 0.94 5.64 -51.93 -0.29 0.64 16 37 H 0.39 6.35 5.96 -40.82 -0.24 6.11 16 38 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 40 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 43 H 0.10 1.29 6.99 -51.93 -0.36 0.92 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.09 0.78 5.99 -51.93 -0.31 0.47 16 46 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 371.78 15.07 5.60 5.60 Total: -1.00 -35.16 371.78 -7.17 -42.33 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -7.37 Total: 0.92 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: -0.07 Total: 8.62 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: -0.38 Total: -53.09 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: 0.07 Total: -20.98 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.16 -7.17 -42.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813135368.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.423 kcal (2) G-P(sol) polarization free energy of solvation -35.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds