Wall clock time and date at job start Fri Apr 10 2020 18:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 N 1.41603 * 114.00074 * 2 1 4 4 C 1.46501 * 120.00394 * 270.00362 * 3 2 1 5 5 C 1.34779 * 119.99793 * 89.99932 * 3 2 1 6 6 O 1.21279 * 120.00130 * 179.97438 * 5 3 2 7 7 C 1.50707 * 119.99685 * 0.02562 * 5 3 2 8 8 C 1.53043 * 109.45274 * 179.97438 * 7 5 3 9 9 C 1.53200 * 109.30838 * 178.62732 * 8 7 5 10 10 N 1.46924 * 108.77654 * 54.63417 * 9 8 7 11 11 C 1.34774 * 120.63429 * 126.36713 * 10 9 8 12 12 O 1.21586 * 120.00512 * 185.22731 * 11 10 9 13 13 N 1.34784 * 119.99579 * 5.23244 * 11 10 9 14 14 C 1.46495 * 119.99802 * 175.01574 * 13 11 10 15 15 C 1.52999 * 109.47231 * 179.97438 * 14 13 11 16 16 C 1.50694 * 109.47412 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00232 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00250 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99891 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00458 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47327 * 90.00150 * 20 18 16 22 22 H 1.48497 * 109.47817 * 210.00390 * 20 18 16 23 23 H 1.48506 * 109.47176 * 330.00367 * 20 18 16 24 24 C 1.46930 * 118.73918 * 306.64490 * 10 9 8 25 25 C 1.52767 * 109.00782 * 53.30524 * 24 10 9 26 26 H 1.09001 * 109.47015 * 59.99337 * 1 2 3 27 27 H 1.08990 * 109.47258 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46941 * 299.99806 * 1 2 3 29 29 H 1.08997 * 109.46984 * 270.00202 * 4 3 2 30 30 H 1.09004 * 109.46808 * 29.99585 * 4 3 2 31 31 H 1.08995 * 109.47198 * 149.99722 * 4 3 2 32 32 H 1.08995 * 109.45697 * 299.96818 * 7 5 3 33 33 H 1.08998 * 109.50039 * 58.67568 * 8 7 5 34 34 H 1.08993 * 109.52537 * 298.58979 * 8 7 5 35 35 H 1.08998 * 109.58191 * 294.84735 * 9 8 7 36 36 H 1.09000 * 109.70456 * 174.49344 * 9 8 7 37 37 H 0.97001 * 119.99741 * 355.00924 * 13 11 10 38 38 H 1.09001 * 109.47126 * 59.99487 * 14 13 11 39 39 H 1.09000 * 109.47373 * 299.99273 * 14 13 11 40 40 H 1.09006 * 109.47073 * 300.00452 * 15 14 13 41 41 H 1.09003 * 109.46699 * 59.99584 * 15 14 13 42 42 H 0.97003 * 120.00049 * 179.97438 * 19 18 16 43 43 H 1.08993 * 109.58889 * 173.14535 * 24 10 9 44 44 H 1.09001 * 109.58692 * 293.57275 * 24 10 9 45 45 H 1.08993 * 109.56435 * 185.55251 * 25 24 10 46 46 H 1.09005 * 109.38001 * 65.52056 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0050 1.2936 0.0000 4 6 2.3029 1.9629 -1.2687 5 6 2.2791 1.9092 1.1672 6 8 2.7728 3.0169 1.1673 7 6 1.9731 1.2205 2.4723 8 6 2.3782 2.1291 3.6354 9 6 2.0342 1.4403 4.9598 10 7 2.6665 0.1142 4.9814 11 6 3.4614 -0.2510 6.0067 12 8 4.0543 -1.3118 5.9684 13 7 3.5991 0.5598 7.0745 14 6 4.3746 0.1165 8.2356 15 6 4.3744 1.2164 9.2992 16 6 5.1716 0.7602 10.4938 17 1 5.6327 -0.2164 10.4944 18 6 5.3132 1.5899 11.5858 19 7 4.7521 2.7794 11.5850 20 14 6.3008 1.0242 13.0670 21 1 7.7218 1.4196 12.8949 22 1 5.7566 1.6561 14.2957 23 1 6.2093 -0.4531 13.1881 24 6 2.4206 -0.8040 3.8611 25 6 2.7558 -0.0921 2.5516 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.3156 1.7108 -1.5834 30 1 1.5939 1.6337 -2.0283 31 1 2.2209 3.0419 -1.1383 32 1 0.9051 1.0102 2.5302 33 1 1.8376 3.0729 3.5650 34 1 3.4504 2.3197 3.5923 35 1 0.9530 1.3310 5.0448 36 1 2.4077 2.0368 5.7922 37 1 3.1847 1.4369 7.0741 38 1 5.3997 -0.0924 7.9296 39 1 3.9270 -0.7878 8.6478 40 1 4.8222 2.1207 8.8868 41 1 3.3493 1.4257 9.6052 42 1 4.8515 3.3630 12.3534 43 1 3.0509 -1.6869 3.9671 44 1 1.3716 -1.1000 3.8546 45 1 2.4841 -0.7291 1.7100 46 1 3.8247 0.1189 2.5179 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813135368.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:09 Heat of formation + Delta-G solvation = -81.951375 kcal Electronic energy + Delta-G solvation = -26621.510635 eV Core-core repulsion = 22740.644025 eV Total energy + Delta-G solvation = -3880.866610 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.73417 -40.89886 -38.54464 -38.24526 -36.60247 -34.93696 -34.05861 -34.02157 -32.22477 -31.21062 -28.78740 -27.72971 -26.78548 -25.79705 -24.25333 -23.05234 -22.48165 -21.34798 -20.60710 -19.35432 -18.66903 -18.42476 -17.75622 -17.23444 -17.06316 -16.71991 -16.48846 -16.05742 -15.72746 -15.43728 -15.32906 -15.21027 -15.08477 -14.62452 -14.44966 -14.25180 -14.15555 -13.70396 -13.60251 -13.37751 -13.17809 -13.04455 -12.91979 -12.67563 -12.51674 -12.27915 -12.23142 -11.96965 -11.71491 -11.64732 -11.49114 -11.41468 -11.12199 -10.84906 -10.59677 -10.16034 -10.13352 -9.47457 -8.23121 -6.33364 0.86671 1.33681 1.42416 1.43242 1.54460 1.69186 2.13290 2.41595 2.85245 3.01169 3.11578 3.59549 3.74283 3.87408 4.02243 4.18157 4.29393 4.34900 4.36764 4.43302 4.45350 4.51264 4.51721 4.52375 4.66249 4.69384 4.79347 4.79770 4.83667 4.86752 4.86869 4.96897 5.10571 5.21672 5.32116 5.34503 5.51100 5.59549 5.60667 5.79852 5.94339 6.18048 6.30383 6.79558 6.90741 6.98916 7.35763 7.56840 8.88878 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.031178 B = 0.002329 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.850941 B =12021.791964 C =12491.697905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.017 4.017 2 O -0.146 6.146 3 N -0.483 5.483 4 C 0.080 3.920 5 C 0.525 3.475 6 O -0.559 6.559 7 C -0.093 4.093 8 C -0.112 4.112 9 C 0.110 3.890 10 N -0.628 5.628 11 C 0.699 3.301 12 O -0.638 6.638 13 N -0.736 5.736 14 C 0.160 3.840 15 C 0.025 3.975 16 C -0.546 4.546 17 H 0.059 0.941 18 C 0.006 3.994 19 N -0.926 5.926 20 Si 0.966 3.034 21 H -0.273 1.273 22 H -0.279 1.279 23 H -0.266 1.266 24 C 0.131 3.869 25 C -0.113 4.113 26 H 0.061 0.939 27 H 0.133 0.867 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.102 0.898 31 H 0.080 0.920 32 H 0.128 0.872 33 H 0.093 0.907 34 H 0.049 0.951 35 H 0.103 0.897 36 H 0.081 0.919 37 H 0.404 0.596 38 H 0.040 0.960 39 H 0.046 0.954 40 H 0.006 0.994 41 H 0.010 0.990 42 H 0.266 0.734 43 H 0.075 0.925 44 H 0.098 0.902 45 H 0.110 0.890 46 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.560 -2.980 -27.602 31.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 O -0.150 6.150 3 N -0.262 5.262 4 C -0.059 4.059 5 C 0.316 3.684 6 O -0.437 6.437 7 C -0.114 4.114 8 C -0.150 4.150 9 C -0.012 4.012 10 N -0.366 5.366 11 C 0.400 3.600 12 O -0.520 6.520 13 N -0.392 5.392 14 C 0.036 3.964 15 C -0.013 4.013 16 C -0.584 4.584 17 H 0.077 0.923 18 C -0.192 4.192 19 N -0.566 5.566 20 Si 0.790 3.210 21 H -0.199 1.199 22 H -0.204 1.204 23 H -0.190 1.190 24 C 0.009 3.991 25 C -0.151 4.151 26 H 0.080 0.920 27 H 0.150 0.850 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.121 0.879 31 H 0.098 0.902 32 H 0.146 0.854 33 H 0.112 0.888 34 H 0.068 0.932 35 H 0.121 0.879 36 H 0.099 0.901 37 H 0.242 0.758 38 H 0.058 0.942 39 H 0.064 0.936 40 H 0.024 0.976 41 H 0.029 0.971 42 H 0.075 0.925 43 H 0.094 0.906 44 H 0.116 0.884 45 H 0.128 0.872 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -13.801 -3.183 -27.534 30.963 hybrid contribution 0.332 0.494 0.776 0.978 sum -13.469 -2.689 -26.759 30.078 Atomic orbital electron populations 1.23686 0.79669 1.05878 1.02155 1.90640 1.22110 1.05544 1.96723 1.50018 1.58613 1.10704 1.06824 1.22037 1.02572 0.97583 0.83739 1.21134 0.76897 0.84687 0.85698 1.90751 1.45452 1.20795 1.86714 1.21275 1.03709 0.95928 0.90442 1.21722 1.01964 0.98679 0.92673 1.21850 0.99493 0.82003 0.97854 1.47388 1.50172 1.17802 1.21204 1.16101 0.79825 0.83364 0.80668 1.90837 1.52912 1.26445 1.81822 1.45431 1.57168 1.20012 1.16635 1.21076 0.93573 0.97704 0.84086 1.19119 0.96518 0.93234 0.92407 1.21455 1.33091 1.02308 1.01552 0.92285 1.25879 0.96744 0.94901 1.01705 1.70062 1.45286 1.09455 1.31800 0.85432 0.78645 0.78764 0.78126 1.19875 1.20427 1.19004 1.21480 1.02556 0.92024 0.83056 1.21817 0.99214 0.95414 0.98690 0.91992 0.84951 0.92207 0.91613 0.87931 0.90165 0.85405 0.88808 0.93227 0.87915 0.90114 0.75831 0.94155 0.93599 0.97595 0.97148 0.92541 0.90638 0.88443 0.87157 0.93799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.07 11.44 113.37 1.30 1.22 16 2 O -0.15 -1.62 8.78 -38.79 -0.34 -1.97 16 3 N -0.48 -7.20 3.34 -484.51 -1.62 -8.82 16 4 C 0.08 0.90 10.82 127.77 1.38 2.29 16 5 C 0.53 10.32 7.11 87.66 0.62 10.94 16 6 O -0.56 -15.10 15.56 -3.03 -0.05 -15.15 16 7 C -0.09 -1.48 2.08 -11.51 -0.02 -1.50 16 8 C -0.11 -2.14 4.65 30.68 0.14 -2.00 16 9 C 0.11 2.13 6.39 86.37 0.55 2.68 16 10 N -0.63 -16.39 2.98 -837.72 -2.50 -18.88 16 11 C 0.70 25.65 8.30 179.05 1.49 27.14 16 12 O -0.64 -28.58 15.77 -3.99 -0.06 -28.65 16 13 N -0.74 -27.53 5.47 -478.54 -2.62 -30.15 16 14 C 0.16 7.23 5.62 86.38 0.49 7.71 16 15 C 0.02 1.28 5.09 29.85 0.15 1.43 16 16 C -0.55 -31.04 9.11 25.60 0.23 -30.81 16 17 H 0.06 3.29 7.74 -2.91 -0.02 3.26 16 18 C 0.01 0.36 5.46 84.65 0.46 0.83 16 19 N -0.93 -54.88 13.29 21.45 0.28 -54.60 16 20 Si 0.97 44.19 29.54 68.60 2.03 46.22 16 21 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 22 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 23 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 24 C 0.13 2.71 6.41 86.22 0.55 3.27 16 25 C -0.11 -2.01 5.20 30.53 0.16 -1.85 16 26 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 27 H 0.13 0.02 8.14 -2.39 -0.02 0.00 16 28 H 0.06 0.23 7.13 -2.39 -0.02 0.21 16 29 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.08 1.04 7.42 -2.39 -0.02 1.02 16 32 H 0.13 1.27 7.13 -2.39 -0.02 1.25 16 33 H 0.09 1.62 8.07 -2.39 -0.02 1.60 16 34 H 0.05 1.24 8.13 -2.39 -0.02 1.22 16 35 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.08 1.67 5.64 -2.39 -0.01 1.65 16 37 H 0.40 13.12 5.96 -92.71 -0.55 12.56 16 38 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.01 0.31 8.14 -2.38 -0.02 0.29 16 41 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 43 H 0.08 1.96 6.99 -2.39 -0.02 1.94 16 44 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.11 1.60 5.99 -2.39 -0.01 1.59 16 46 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 Total: -1.00 -77.50 371.78 3.06 -74.44 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: 0.43 Total: 16.19 kcal Atomic # 6 Polarization: 13.85 SS G_CDS: 7.50 Total: 21.35 kcal Atomic # 7 Polarization: -106.00 SS G_CDS: -6.44 Total: -112.45 kcal Atomic # 8 Polarization: -45.31 SS G_CDS: -0.45 Total: -45.76 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -77.50 3.06 -74.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813135368.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.508 kcal (2) G-P(sol) polarization free energy of solvation -77.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds