Wall clock time and date at job start Fri Apr 10 2020 18:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46507 * 119.99957 * 2 1 4 4 C 1.34779 * 120.00275 * 179.97438 * 2 1 3 5 5 O 1.21508 * 119.99839 * 0.02562 * 4 2 1 6 6 O 1.34642 * 119.99945 * 179.97438 * 4 2 1 7 7 C 1.45202 * 116.99478 * 180.02562 * 6 4 2 8 8 C 1.53124 * 109.52089 * 210.00211 * 7 6 4 9 9 C 1.53031 * 109.27814 * 182.38324 * 8 7 6 10 10 N 1.46847 * 109.52813 * 59.17740 * 9 8 7 11 11 C 1.46894 * 111.00173 * 174.15929 * 10 9 8 12 12 C 1.50697 * 109.47436 * 293.61382 * 11 10 9 13 13 O 1.21284 * 120.00073 * 353.73180 * 12 11 10 14 14 N 1.34778 * 119.99898 * 173.45699 * 12 11 10 15 15 C 1.46497 * 119.99797 * 180.27352 * 14 12 11 16 16 C 1.50705 * 109.47367 * 179.97438 * 15 14 12 17 17 H 1.07998 * 119.99638 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00160 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00231 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99960 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47104 * 59.99600 * 20 18 16 22 22 H 1.48496 * 109.47114 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46740 * 299.99853 * 20 18 16 24 24 C 1.46847 * 111.19736 * 298.26116 * 10 9 8 25 25 C 1.53039 * 109.52415 * 61.74168 * 24 10 9 26 26 H 1.09007 * 109.47059 * 269.99854 * 1 2 3 27 27 H 1.08996 * 109.47503 * 30.00099 * 1 2 3 28 28 H 1.08999 * 109.47034 * 150.00463 * 1 2 3 29 29 H 1.09004 * 109.46725 * 269.99771 * 3 2 1 30 30 H 1.09000 * 109.47126 * 29.99597 * 3 2 1 31 31 H 1.08997 * 109.47156 * 150.00124 * 3 2 1 32 32 H 1.08995 * 109.52575 * 330.13182 * 7 6 4 33 33 H 1.08997 * 109.50017 * 62.43856 * 8 7 6 34 34 H 1.09002 * 109.50229 * 302.32318 * 8 7 6 35 35 H 1.09012 * 109.46123 * 299.16194 * 9 8 7 36 36 H 1.09002 * 109.45519 * 179.19183 * 9 8 7 37 37 H 1.09006 * 109.47265 * 173.61116 * 11 10 9 38 38 H 1.08999 * 109.46905 * 53.61730 * 11 10 9 39 39 H 0.97001 * 120.00195 * 0.27492 * 14 12 11 40 40 H 1.09000 * 109.47329 * 300.00167 * 15 14 12 41 41 H 1.09005 * 109.47293 * 60.00199 * 15 14 12 42 42 H 0.96998 * 120.00087 * 180.02562 * 19 18 16 43 43 H 1.08996 * 109.45875 * 181.75103 * 24 10 9 44 44 H 1.08992 * 109.46460 * 301.72429 * 24 10 9 45 45 H 1.08994 * 109.50626 * 180.88030 * 25 24 10 46 46 H 1.08996 * 109.50629 * 60.75326 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5314 -2.2195 0.0005 6 8 3.4853 -1.1671 0.0000 7 6 4.1445 -2.4609 0.0000 8 6 5.4906 -2.3493 0.7211 9 6 6.2069 -3.7005 0.6661 10 7 6.4125 -4.0904 -0.7346 11 6 7.2192 -5.3145 -0.8274 12 6 8.6148 -5.0352 -0.3321 13 8 8.9420 -3.9024 -0.0477 14 7 9.4976 -6.0449 -0.1998 15 6 10.8524 -5.7743 0.2874 16 6 11.6329 -7.0623 0.3433 17 1 11.1664 -7.9896 0.0452 18 6 12.9423 -7.0567 0.7749 19 7 13.5105 -5.9274 1.1374 20 14 13.9099 -8.6531 0.8435 21 1 13.9827 -9.2466 -0.5159 22 1 15.2831 -8.3788 1.3375 23 1 13.2331 -9.6030 1.7627 24 6 5.1316 -4.2498 -1.4349 25 6 4.3833 -2.9149 -1.4427 26 1 -0.3633 0.0000 1.0277 27 1 -0.3634 0.8899 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 2.3791 1.5834 -1.0277 30 1 1.6083 2.0285 0.5138 31 1 3.1499 1.1385 0.5138 32 1 3.5163 -3.1898 0.5120 33 1 5.3242 -2.0676 1.7609 34 1 6.1037 -1.5922 0.2321 35 1 5.5995 -4.4542 1.1675 36 1 7.1720 -3.6204 1.1663 37 1 7.2613 -5.6441 -1.8656 38 1 6.7662 -6.0953 -0.2165 39 1 9.2359 -6.9509 -0.4273 40 1 11.3488 -5.0772 -0.3876 41 1 10.7994 -5.3385 1.2852 42 1 14.4318 -5.9234 1.4407 43 1 5.3159 -4.5688 -2.4607 44 1 4.5293 -5.0008 -0.9238 45 1 3.4258 -3.0374 -1.9489 46 1 4.9790 -2.1668 -1.9657 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815191184.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:13 Heat of formation + Delta-G solvation = -109.605521 kcal Electronic energy + Delta-G solvation = -26112.331787 eV Core-core repulsion = 22230.266003 eV Total energy + Delta-G solvation = -3882.065784 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.88258 -39.48715 -38.16891 -36.75712 -35.80035 -34.14212 -32.79185 -32.26738 -30.98405 -28.64669 -28.19522 -26.81347 -25.99310 -23.54892 -23.19890 -22.16646 -20.80282 -20.04992 -19.62276 -18.30508 -17.35415 -17.11564 -16.72339 -16.11935 -15.65148 -15.31320 -15.21310 -14.92325 -14.67285 -14.42392 -14.23180 -13.86157 -13.67446 -13.31323 -13.27664 -13.04856 -12.89079 -12.64513 -12.47848 -12.35602 -12.07816 -11.91577 -11.70092 -11.39684 -11.31003 -11.29327 -10.99098 -10.87186 -10.80137 -10.64245 -10.32183 -10.21448 -9.40643 -9.20029 -9.01457 -8.72249 -8.24902 -7.84700 -6.16206 -4.23247 1.86020 2.55420 3.25284 3.30123 3.31501 3.39869 3.54746 3.63176 4.24226 4.41107 4.58218 4.60854 4.68939 4.76631 4.90966 4.93354 5.06276 5.18188 5.18492 5.19720 5.21329 5.33492 5.35709 5.38134 5.44022 5.48445 5.56550 5.63001 5.71191 5.78701 5.90781 5.96772 6.02063 6.15059 6.34665 6.92336 6.96220 7.08259 7.33104 7.46100 7.52998 7.68140 7.97871 8.01020 8.64748 8.79694 9.13769 9.43559 10.93874 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.043607 B = 0.002034 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.951212 B =13759.637290 C =14093.136515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.607 5.607 3 C 0.083 3.917 4 C 0.646 3.354 5 O -0.573 6.573 6 O -0.359 6.359 7 C 0.108 3.892 8 C -0.109 4.109 9 C 0.058 3.942 10 N -0.520 5.520 11 C 0.036 3.964 12 C 0.498 3.502 13 O -0.537 6.537 14 N -0.716 5.716 15 C 0.252 3.748 16 C -0.544 4.544 17 H 0.062 0.938 18 C 0.064 3.936 19 N -0.885 5.885 20 Si 0.904 3.096 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.276 1.276 24 C 0.061 3.939 25 C -0.130 4.130 26 H 0.057 0.943 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.031 0.969 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.058 0.942 39 H 0.389 0.611 40 H 0.027 0.973 41 H 0.026 0.974 42 H 0.266 0.734 43 H 0.083 0.917 44 H 0.036 0.964 45 H 0.072 0.928 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.296 10.267 -3.523 27.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.348 5.348 3 C -0.060 4.060 4 C 0.401 3.599 5 O -0.462 6.462 6 O -0.273 6.273 7 C 0.053 3.947 8 C -0.147 4.147 9 C -0.070 4.070 10 N -0.245 5.245 11 C -0.095 4.095 12 C 0.281 3.719 13 O -0.415 6.415 14 N -0.365 5.365 15 C 0.131 3.869 16 C -0.583 4.583 17 H 0.080 0.920 18 C -0.140 4.140 19 N -0.523 5.523 20 Si 0.731 3.269 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.201 1.201 24 C -0.067 4.067 25 C -0.168 4.168 26 H 0.076 0.924 27 H 0.094 0.906 28 H 0.098 0.902 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.106 0.894 35 H 0.049 0.951 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.076 0.924 39 H 0.222 0.778 40 H 0.045 0.955 41 H 0.044 0.956 42 H 0.076 0.924 43 H 0.101 0.899 44 H 0.054 0.946 45 H 0.091 0.909 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -24.708 11.183 -3.463 27.342 hybrid contribution -0.023 -1.929 0.292 1.951 sum -24.732 9.255 -3.171 26.596 Atomic orbital electron populations 1.21658 0.76552 1.03569 1.02241 1.46503 1.06847 1.04453 1.77032 1.21805 0.97544 0.84280 1.02344 1.18112 0.81598 0.84070 0.76138 1.90975 1.68875 1.30420 1.55932 1.86318 1.18245 1.36587 1.86166 1.22885 0.93014 0.81232 0.97576 1.21665 0.93243 0.99228 1.00539 1.22174 1.01580 0.94519 0.88711 1.61561 1.15670 1.32551 1.14713 1.22007 0.93198 0.91520 1.02816 1.20291 0.86454 0.85854 0.79271 1.90648 1.79043 1.21646 1.50161 1.46468 1.15046 1.09370 1.65603 1.19073 0.75928 0.96931 0.94968 1.21199 0.97412 0.93428 1.46224 0.91977 1.24952 0.97452 0.96794 0.94823 1.69964 1.13698 1.25693 1.42901 0.86476 0.78954 0.82970 0.78500 1.20078 1.21073 1.20101 1.22032 0.89232 0.95821 0.99637 1.21982 1.00655 0.98175 0.95983 0.92416 0.90576 0.90193 0.92332 0.90847 0.90113 0.89832 0.90681 0.89377 0.95118 0.87767 0.88107 0.92430 0.77840 0.95542 0.95629 0.92397 0.89859 0.94569 0.90947 0.89821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.63 10.44 59.84 0.62 1.25 16 2 N -0.61 -5.35 3.27 -195.40 -0.64 -5.99 16 3 C 0.08 0.49 10.44 59.85 0.63 1.11 16 4 C 0.65 7.89 8.37 54.06 0.45 8.34 16 5 O -0.57 -8.50 15.18 -19.28 -0.29 -8.80 16 6 O -0.36 -4.33 8.71 -40.33 -0.35 -4.68 16 7 C 0.11 1.30 2.52 -26.60 -0.07 1.23 16 8 C -0.11 -1.34 5.76 -26.65 -0.15 -1.49 16 9 C 0.06 0.80 5.12 -3.84 -0.02 0.78 16 10 N -0.52 -7.30 4.35 -236.12 -1.03 -8.32 16 11 C 0.04 0.50 5.45 -4.98 -0.03 0.48 16 12 C 0.50 9.69 7.36 -10.99 -0.08 9.61 16 13 O -0.54 -12.62 14.71 5.55 0.08 -12.53 16 14 N -0.72 -14.79 5.55 -61.47 -0.34 -15.13 16 15 C 0.25 6.63 5.43 -5.19 -0.03 6.60 16 16 C -0.54 -14.70 9.28 -34.44 -0.32 -15.02 16 17 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 18 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 19 N -0.89 -26.03 13.29 55.43 0.74 -25.30 16 20 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 21 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 C 0.06 0.68 5.46 -3.83 -0.02 0.66 16 25 C -0.13 -1.47 5.74 -26.65 -0.15 -1.62 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.08 0.26 8.07 -51.93 -0.42 -0.16 16 28 H 0.08 0.60 7.42 -51.93 -0.39 0.21 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.26 8.07 -51.93 -0.42 -0.16 16 31 H 0.08 0.54 7.37 -51.93 -0.38 0.15 16 32 H 0.08 1.07 7.16 -51.93 -0.37 0.70 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.03 0.39 8.14 -51.92 -0.42 -0.03 16 36 H 0.10 1.74 6.06 -51.93 -0.31 1.43 16 37 H 0.10 1.21 7.98 -51.93 -0.41 0.80 16 38 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16 39 H 0.39 6.84 8.32 -40.82 -0.34 6.51 16 40 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.08 0.83 8.01 -51.93 -0.42 0.41 16 44 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 376.65 15.07 5.68 5.68 Total: -1.00 -34.50 376.65 -8.09 -42.58 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -7.65 Total: 3.12 kcal Atomic # 6 Polarization: 12.86 SS G_CDS: 0.74 Total: 13.59 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: -1.27 Total: -54.74 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -0.56 Total: -26.01 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.50 -8.09 -42.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815191184.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.021 kcal (2) G-P(sol) polarization free energy of solvation -34.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds