Wall clock time and date at job start Fri Apr 10 2020 18:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46507 * 119.99957 * 2 1 4 4 C 1.34779 * 120.00275 * 179.97438 * 2 1 3 5 5 O 1.21508 * 119.99839 * 0.02562 * 4 2 1 6 6 O 1.34642 * 119.99945 * 179.97438 * 4 2 1 7 7 C 1.45202 * 116.99478 * 180.02562 * 6 4 2 8 8 C 1.53124 * 109.52089 * 210.00211 * 7 6 4 9 9 C 1.53031 * 109.27814 * 182.38324 * 8 7 6 10 10 N 1.46847 * 109.52813 * 59.17740 * 9 8 7 11 11 C 1.46894 * 111.00173 * 174.15929 * 10 9 8 12 12 C 1.50697 * 109.47436 * 293.61382 * 11 10 9 13 13 O 1.21284 * 120.00073 * 353.73180 * 12 11 10 14 14 N 1.34778 * 119.99898 * 173.45699 * 12 11 10 15 15 C 1.46497 * 119.99797 * 180.27352 * 14 12 11 16 16 C 1.50705 * 109.47367 * 179.97438 * 15 14 12 17 17 H 1.07998 * 119.99638 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00160 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00231 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99960 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47104 * 59.99600 * 20 18 16 22 22 H 1.48496 * 109.47114 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46740 * 299.99853 * 20 18 16 24 24 C 1.46847 * 111.19736 * 298.26116 * 10 9 8 25 25 C 1.53039 * 109.52415 * 61.74168 * 24 10 9 26 26 H 1.09007 * 109.47059 * 269.99854 * 1 2 3 27 27 H 1.08996 * 109.47503 * 30.00099 * 1 2 3 28 28 H 1.08999 * 109.47034 * 150.00463 * 1 2 3 29 29 H 1.09004 * 109.46725 * 269.99771 * 3 2 1 30 30 H 1.09000 * 109.47126 * 29.99597 * 3 2 1 31 31 H 1.08997 * 109.47156 * 150.00124 * 3 2 1 32 32 H 1.08995 * 109.52575 * 330.13182 * 7 6 4 33 33 H 1.08997 * 109.50017 * 62.43856 * 8 7 6 34 34 H 1.09002 * 109.50229 * 302.32318 * 8 7 6 35 35 H 1.09012 * 109.46123 * 299.16194 * 9 8 7 36 36 H 1.09002 * 109.45519 * 179.19183 * 9 8 7 37 37 H 1.09006 * 109.47265 * 173.61116 * 11 10 9 38 38 H 1.08999 * 109.46905 * 53.61730 * 11 10 9 39 39 H 0.97001 * 120.00195 * 0.27492 * 14 12 11 40 40 H 1.09000 * 109.47329 * 300.00167 * 15 14 12 41 41 H 1.09005 * 109.47293 * 60.00199 * 15 14 12 42 42 H 0.96998 * 120.00087 * 180.02562 * 19 18 16 43 43 H 1.08996 * 109.45875 * 181.75103 * 24 10 9 44 44 H 1.08992 * 109.46460 * 301.72429 * 24 10 9 45 45 H 1.08994 * 109.50626 * 180.88030 * 25 24 10 46 46 H 1.08996 * 109.50629 * 60.75326 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5314 -2.2195 0.0005 6 8 3.4853 -1.1671 0.0000 7 6 4.1445 -2.4609 0.0000 8 6 5.4906 -2.3493 0.7211 9 6 6.2069 -3.7005 0.6661 10 7 6.4125 -4.0904 -0.7346 11 6 7.2192 -5.3145 -0.8274 12 6 8.6148 -5.0352 -0.3321 13 8 8.9420 -3.9024 -0.0477 14 7 9.4976 -6.0449 -0.1998 15 6 10.8524 -5.7743 0.2874 16 6 11.6329 -7.0623 0.3433 17 1 11.1664 -7.9896 0.0452 18 6 12.9423 -7.0567 0.7749 19 7 13.5105 -5.9274 1.1374 20 14 13.9099 -8.6531 0.8435 21 1 13.9827 -9.2466 -0.5159 22 1 15.2831 -8.3788 1.3375 23 1 13.2331 -9.6030 1.7627 24 6 5.1316 -4.2498 -1.4349 25 6 4.3833 -2.9149 -1.4427 26 1 -0.3633 0.0000 1.0277 27 1 -0.3634 0.8899 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 2.3791 1.5834 -1.0277 30 1 1.6083 2.0285 0.5138 31 1 3.1499 1.1385 0.5138 32 1 3.5163 -3.1898 0.5120 33 1 5.3242 -2.0676 1.7609 34 1 6.1037 -1.5922 0.2321 35 1 5.5995 -4.4542 1.1675 36 1 7.1720 -3.6204 1.1663 37 1 7.2613 -5.6441 -1.8656 38 1 6.7662 -6.0953 -0.2165 39 1 9.2359 -6.9509 -0.4273 40 1 11.3488 -5.0772 -0.3876 41 1 10.7994 -5.3385 1.2852 42 1 14.4318 -5.9234 1.4407 43 1 5.3159 -4.5688 -2.4607 44 1 4.5293 -5.0008 -0.9238 45 1 3.4258 -3.0374 -1.9489 46 1 4.9790 -2.1668 -1.9657 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815191184.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:12 Heat of formation + Delta-G solvation = -135.943015 kcal Electronic energy + Delta-G solvation = -26113.473867 eV Core-core repulsion = 22230.266003 eV Total energy + Delta-G solvation = -3883.207863 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.79324 -40.81273 -39.41434 -37.70666 -36.64269 -36.06114 -34.34215 -33.79651 -31.96553 -29.98711 -29.05599 -28.02871 -27.02888 -24.89626 -24.30463 -23.71834 -21.67941 -21.30737 -21.01666 -19.09861 -18.90957 -18.25607 -17.66756 -17.37924 -17.30055 -16.64242 -16.58721 -16.01012 -15.77032 -15.63557 -15.36615 -15.17443 -14.71145 -14.42173 -14.36174 -14.13297 -13.97583 -13.83381 -13.47274 -13.41605 -13.20095 -12.99946 -12.91319 -12.85475 -12.68174 -12.56082 -12.32242 -12.27773 -12.22255 -11.76667 -11.67116 -11.49456 -11.20506 -10.77459 -10.63087 -9.86101 -9.77293 -9.30614 -8.27758 -6.44342 1.08420 1.43655 1.47646 1.55794 1.64780 1.83841 2.27365 2.46024 2.81692 3.01559 3.06884 3.60230 3.66027 3.94081 3.97152 4.08721 4.15813 4.24294 4.30164 4.34294 4.41355 4.45459 4.47742 4.51287 4.66784 4.73903 4.77463 4.82288 4.87338 4.90191 4.93392 5.04883 5.10902 5.13953 5.27233 5.37347 5.41822 5.51144 5.72075 5.86631 5.91792 6.07788 6.16572 6.67064 6.98995 7.14024 7.25345 7.57165 8.84063 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.043607 B = 0.002034 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.951212 B =13759.637290 C =14093.136515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.603 5.603 3 C 0.079 3.921 4 C 0.636 3.364 5 O -0.606 6.606 6 O -0.362 6.362 7 C 0.112 3.888 8 C -0.101 4.101 9 C 0.061 3.939 10 N -0.541 5.541 11 C 0.050 3.950 12 C 0.494 3.506 13 O -0.583 6.583 14 N -0.711 5.711 15 C 0.269 3.731 16 C -0.557 4.557 17 H 0.084 0.916 18 C 0.003 3.997 19 N -0.931 5.931 20 Si 0.984 3.016 21 H -0.262 1.262 22 H -0.286 1.286 23 H -0.262 1.262 24 C 0.065 3.935 25 C -0.124 4.124 26 H 0.065 0.935 27 H 0.109 0.891 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.103 0.897 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.046 0.954 36 H 0.069 0.931 37 H 0.132 0.868 38 H 0.087 0.913 39 H 0.408 0.592 40 H -0.014 1.014 41 H -0.014 1.014 42 H 0.268 0.732 43 H 0.103 0.897 44 H 0.049 0.951 45 H 0.077 0.923 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.112 8.956 -4.450 28.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.344 5.344 3 C -0.063 4.063 4 C 0.391 3.609 5 O -0.498 6.498 6 O -0.276 6.276 7 C 0.056 3.944 8 C -0.139 4.139 9 C -0.067 4.067 10 N -0.266 5.266 11 C -0.081 4.081 12 C 0.280 3.720 13 O -0.463 6.463 14 N -0.362 5.362 15 C 0.146 3.854 16 C -0.595 4.595 17 H 0.102 0.898 18 C -0.197 4.197 19 N -0.569 5.569 20 Si 0.808 3.192 21 H -0.187 1.187 22 H -0.212 1.212 23 H -0.187 1.187 24 C -0.062 4.062 25 C -0.162 4.162 26 H 0.084 0.916 27 H 0.128 0.872 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.121 0.879 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.064 0.936 36 H 0.087 0.913 37 H 0.150 0.850 38 H 0.105 0.895 39 H 0.243 0.757 40 H 0.004 0.996 41 H 0.004 0.996 42 H 0.077 0.923 43 H 0.121 0.879 44 H 0.068 0.932 45 H 0.096 0.904 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -26.584 9.879 -4.413 28.701 hybrid contribution 0.473 -1.375 0.590 1.570 sum -26.111 8.503 -3.822 27.725 Atomic orbital electron populations 1.21876 0.75019 1.04451 1.03085 1.46810 1.07892 1.04264 1.75397 1.22001 0.97452 0.83573 1.03272 1.18424 0.81399 0.84783 0.76307 1.90942 1.69271 1.31828 1.57750 1.86311 1.18573 1.36441 1.86260 1.22783 0.92345 0.81249 0.97973 1.21550 0.93249 0.98109 1.01014 1.22039 1.00046 0.95698 0.88920 1.61494 1.17361 1.32934 1.14817 1.21944 0.89136 0.92293 1.04716 1.21345 0.88255 0.84648 0.77712 1.90633 1.80269 1.23630 1.51796 1.46196 1.13264 1.10911 1.65803 1.18481 0.78776 0.96120 0.92012 1.21613 0.97844 0.94071 1.45935 0.89785 1.26070 0.98789 1.00751 0.94070 1.70134 1.14187 1.28598 1.44013 0.85214 0.76868 0.77964 0.79201 1.18665 1.21183 1.18689 1.22089 0.87806 0.95933 1.00418 1.21927 1.00746 0.98216 0.95295 0.91590 0.87220 0.91763 0.91401 0.87883 0.91178 0.90438 0.89920 0.90875 0.93601 0.91273 0.85034 0.89494 0.75661 0.99649 0.99611 0.92300 0.87918 0.93248 0.90432 0.90532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.03 10.44 127.77 1.33 2.36 16 2 N -0.60 -9.81 3.27 ******* -3.28 -13.09 16 3 C 0.08 0.78 10.44 127.77 1.33 2.12 16 4 C 0.64 15.22 8.37 129.79 1.09 16.31 16 5 O -0.61 -17.89 15.18 19.81 0.30 -17.59 16 6 O -0.36 -8.63 8.71 -55.51 -0.48 -9.12 16 7 C 0.11 2.63 2.52 30.68 0.08 2.71 16 8 C -0.10 -2.53 5.76 30.65 0.18 -2.35 16 9 C 0.06 1.68 5.12 86.32 0.44 2.13 16 10 N -0.54 -14.45 4.35 -900.95 -3.92 -18.37 16 11 C 0.05 1.29 5.45 85.56 0.47 1.75 16 12 C 0.49 19.33 7.36 87.66 0.65 19.98 16 13 O -0.58 -28.58 14.71 -3.04 -0.04 -28.62 16 14 N -0.71 -29.52 5.55 -466.78 -2.59 -32.11 16 15 C 0.27 14.76 5.43 85.64 0.46 15.23 16 16 C -0.56 -30.22 9.28 25.60 0.24 -29.99 16 17 H 0.08 4.09 7.60 -2.91 -0.02 4.07 16 18 C 0.00 0.15 5.46 84.65 0.46 0.62 16 19 N -0.93 -56.33 13.29 21.45 0.28 -56.04 16 20 Si 0.98 42.27 29.54 68.60 2.03 44.29 16 21 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 22 H -0.29 -12.24 7.11 99.48 0.71 -11.53 16 23 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 24 C 0.06 1.29 5.46 86.33 0.47 1.77 16 25 C -0.12 -2.65 5.74 30.65 0.18 -2.47 16 26 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 27 H 0.11 0.42 8.07 -2.39 -0.02 0.40 16 28 H 0.06 0.91 7.42 -2.39 -0.02 0.89 16 29 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 30 H 0.10 0.43 8.07 -2.39 -0.02 0.41 16 31 H 0.07 0.87 7.37 -2.39 -0.02 0.85 16 32 H 0.08 1.94 7.16 -2.39 -0.02 1.93 16 33 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 36 H 0.07 2.42 6.06 -2.39 -0.01 2.40 16 37 H 0.13 2.67 7.98 -2.38 -0.02 2.65 16 38 H 0.09 1.82 8.12 -2.39 -0.02 1.80 16 39 H 0.41 13.75 8.32 -92.71 -0.77 12.98 16 40 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 41 H -0.01 -0.87 8.14 -2.38 -0.02 -0.89 16 42 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 43 H 0.10 1.69 8.01 -2.39 -0.02 1.67 16 44 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -78.80 376.65 -0.13 -78.93 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: 0.20 Total: 21.55 kcal Atomic # 6 Polarization: 22.78 SS G_CDS: 7.37 Total: 30.15 kcal Atomic # 7 Polarization: -110.10 SS G_CDS: -9.50 Total: -119.61 kcal Atomic # 8 Polarization: -55.10 SS G_CDS: -0.23 Total: -55.32 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.29 kcal Total: -78.80 -0.13 -78.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815191184.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.015 kcal (2) G-P(sol) polarization free energy of solvation -78.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds