Wall clock time and date at job start Fri Apr 10 2020 18:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34643 * 116.99546 * 2 1 4 4 O 1.21503 * 120.00120 * 359.97438 * 3 2 1 5 5 N 1.34786 * 119.99714 * 179.97438 * 3 2 1 6 6 C 1.46925 * 120.63029 * 359.97438 * 5 3 2 7 7 C 1.53190 * 108.77461 * 233.63279 * 6 5 3 8 8 C 1.53044 * 109.31166 * 305.36245 * 7 6 5 9 9 C 1.53049 * 109.53547 * 61.36891 * 8 7 6 10 10 H 1.08996 * 109.49665 * 58.61784 * 9 8 7 11 11 N 1.46499 * 109.49677 * 178.68168 * 9 8 7 12 12 C 1.34774 * 119.99755 * 204.99855 * 11 9 8 13 13 O 1.21273 * 120.00176 * 0.02562 * 12 11 9 14 14 C 1.50703 * 119.99685 * 180.02562 * 12 11 9 15 15 H 1.08996 * 109.47343 * 319.99900 * 14 12 11 16 16 N 1.46905 * 109.47075 * 200.00059 * 14 12 11 17 17 C 1.53001 * 109.47072 * 80.00235 * 14 12 11 18 18 C 1.53004 * 109.47067 * 184.99770 * 17 14 12 19 19 C 1.50697 * 109.47101 * 179.97438 * 18 17 14 20 20 H 1.08000 * 120.00038 * 0.02562 * 19 18 17 21 21 C 1.37873 * 120.00294 * 180.02562 * 19 18 17 22 22 N 1.31522 * 119.99761 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00455 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47320 * 59.99113 * 23 21 19 25 25 H 1.48501 * 109.47486 * 179.97438 * 23 21 19 26 26 H 1.48508 * 109.46878 * 299.99489 * 23 21 19 27 27 C 1.46919 * 120.62699 * 180.02562 * 5 3 2 28 28 H 1.09002 * 109.46848 * 60.00728 * 1 2 3 29 29 H 1.09004 * 109.46403 * 179.97438 * 1 2 3 30 30 H 1.08989 * 109.47393 * 300.00133 * 1 2 3 31 31 H 1.08997 * 109.58577 * 113.84589 * 6 5 3 32 32 H 1.09004 * 109.70563 * 353.48940 * 6 5 3 33 33 H 1.09006 * 109.49917 * 185.41477 * 7 6 5 34 34 H 1.09001 * 109.49998 * 65.31747 * 7 6 5 35 35 H 1.09001 * 109.46364 * 301.35214 * 8 7 6 36 36 H 1.08998 * 109.46250 * 181.38695 * 8 7 6 37 37 H 0.97001 * 119.99735 * 25.00002 * 11 9 8 38 38 H 1.00901 * 110.99869 * 176.04968 * 16 14 12 39 39 H 1.00896 * 110.99543 * 300.00090 * 16 14 12 40 40 H 1.08999 * 109.47045 * 304.99692 * 17 14 12 41 41 H 1.09002 * 109.47037 * 64.99916 * 17 14 12 42 42 H 1.08999 * 109.47124 * 299.99874 * 18 17 14 43 43 H 1.09002 * 109.47073 * 60.00168 * 18 17 14 44 44 H 0.97000 * 120.00044 * 180.02562 * 22 21 19 45 45 H 1.09003 * 109.58844 * 6.57823 * 27 5 3 46 46 H 1.09000 * 109.58530 * 246.15389 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4092 1.2703 0.0005 6 6 4.2229 0.0470 0.0017 7 6 5.2116 0.1136 1.1699 8 6 6.0226 1.4079 1.0735 9 6 5.0806 2.6104 1.1688 10 1 4.5341 2.5706 2.1110 11 7 5.8610 3.8487 1.1080 12 6 5.3743 4.9795 1.6567 13 8 4.2906 4.9717 2.2010 14 6 6.1767 6.2535 1.5936 15 1 7.2297 6.0285 1.7630 16 7 5.7022 7.1828 2.6277 17 6 6.0076 6.8951 0.2150 18 6 6.9182 8.1199 0.1073 19 6 6.7522 8.7514 -1.2509 20 1 6.0655 8.3224 -1.9656 21 6 7.4768 9.8769 -1.5811 22 7 8.3127 10.3997 -0.7106 23 14 7.2704 10.6602 -3.2643 24 1 5.8569 11.0774 -3.4463 25 1 8.1543 11.8489 -3.3690 26 1 7.6356 9.6772 -4.3159 27 6 4.0904 2.5720 0.0011 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 4.7714 -0.0279 -0.9373 32 1 3.5775 -0.8237 0.1183 33 1 5.8854 -0.7421 1.1256 34 1 4.6634 0.0970 2.1119 35 1 6.5510 1.4352 0.1206 36 1 6.7439 1.4461 1.8898 37 1 6.7279 3.8548 0.6729 38 1 6.2662 8.0191 2.6486 39 1 4.7278 7.4071 2.4925 40 1 6.2761 6.1737 -0.5568 41 1 4.9700 7.2009 0.0814 42 1 6.6498 8.8412 0.8791 43 1 7.9559 7.8140 0.2408 44 1 8.8223 11.1917 -0.9427 45 1 3.3560 3.3688 0.1187 46 1 4.6280 2.7035 -0.9379 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000818099151.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:16 Heat of formation + Delta-G solvation = -129.080052 kcal Electronic energy + Delta-G solvation = -26652.375773 eV Core-core repulsion = 22769.465511 eV Total energy + Delta-G solvation = -3882.910263 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.93778 -39.82598 -38.30142 -36.44956 -35.52307 -34.68754 -32.84792 -32.64172 -30.28399 -29.86992 -28.02530 -26.48129 -25.55334 -24.25299 -22.95198 -21.77361 -20.70034 -20.27761 -19.67167 -18.36179 -17.34800 -17.26248 -16.78904 -16.25766 -16.05995 -15.33355 -15.07571 -14.85180 -14.47237 -14.36148 -14.30650 -14.10578 -13.90515 -13.59433 -13.26397 -13.10688 -12.92948 -12.86308 -12.34045 -12.15623 -11.90458 -11.70256 -11.48488 -11.38926 -11.08214 -11.00567 -10.92231 -10.89577 -10.70434 -10.65966 -9.98545 -9.91032 -9.43523 -9.28838 -9.20243 -8.81328 -8.43545 -8.18215 -6.08339 -4.11470 1.84929 2.61114 2.92099 3.18094 3.28902 3.33704 3.36456 3.64918 4.38392 4.39887 4.47986 4.51857 4.70777 4.88434 4.95583 4.97181 5.03708 5.10929 5.16071 5.20177 5.25680 5.27867 5.40061 5.44343 5.54097 5.58001 5.63824 5.75752 5.78307 5.93820 6.03076 6.07989 6.28617 6.49816 6.53807 6.87784 7.05309 7.42581 7.51704 7.61009 7.68756 7.88651 7.91672 8.06075 8.31296 8.45203 8.94357 9.53442 11.02520 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.016220 B = 0.002765 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.881086 B =10124.326481 C =10667.331500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.373 6.373 3 C 0.648 3.352 4 O -0.563 6.563 5 N -0.591 5.591 6 C 0.109 3.891 7 C -0.131 4.131 8 C -0.129 4.129 9 C 0.135 3.865 10 H 0.092 0.908 11 N -0.730 5.730 12 C 0.525 3.475 13 O -0.531 6.531 14 C 0.075 3.925 15 H 0.097 0.903 16 N -0.831 5.831 17 C -0.138 4.138 18 C 0.025 3.975 19 C -0.524 4.524 20 H 0.054 0.946 21 C 0.059 3.941 22 N -0.894 5.894 23 Si 0.893 3.107 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.277 1.277 27 C 0.115 3.885 28 H 0.063 0.937 29 H 0.102 0.898 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.404 0.596 38 H 0.354 0.646 39 H 0.346 0.654 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.018 0.982 43 H 0.018 0.982 44 H 0.262 0.738 45 H 0.103 0.897 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.229 -25.113 2.582 26.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.287 6.287 3 C 0.402 3.598 4 O -0.451 6.451 5 N -0.332 5.332 6 C -0.013 4.013 7 C -0.170 4.170 8 C -0.167 4.167 9 C 0.028 3.972 10 H 0.110 0.890 11 N -0.383 5.383 12 C 0.312 3.688 13 O -0.405 6.405 14 C -0.040 4.040 15 H 0.115 0.885 16 N -0.363 5.363 17 C -0.177 4.177 18 C -0.012 4.012 19 C -0.563 4.563 20 H 0.072 0.928 21 C -0.143 4.143 22 N -0.532 5.532 23 Si 0.721 3.279 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.202 1.202 27 C -0.008 4.008 28 H 0.082 0.918 29 H 0.120 0.880 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.112 0.888 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.238 0.762 38 H 0.170 0.830 39 H 0.159 0.841 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.036 0.964 43 H 0.037 0.963 44 H 0.072 0.928 45 H 0.122 0.878 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.009 -25.238 3.544 26.432 hybrid contribution 0.115 1.186 -2.042 2.364 sum -6.894 -24.052 1.501 25.066 Atomic orbital electron populations 1.23198 0.74437 1.03341 1.02909 1.86203 1.24143 1.31076 1.87245 1.18029 0.83149 0.82172 0.76492 1.91044 1.64028 1.34846 1.55201 1.46797 1.01924 1.08296 1.76219 1.21791 0.93932 0.86645 0.98979 1.21896 0.98134 0.97867 0.99097 1.21844 0.98048 0.93397 1.03453 1.21151 0.92503 0.84000 0.99512 0.89029 1.45970 1.22861 1.08915 1.60571 1.20987 0.86621 0.84817 0.76358 1.90669 1.21708 1.85234 1.42932 1.21474 0.98602 0.90461 0.93439 0.88533 1.58749 1.08775 1.19950 1.48860 1.22386 1.01803 1.00153 0.93388 1.19094 0.94003 0.90845 0.97279 1.21148 1.24084 1.11300 0.99720 0.92759 1.25010 0.95146 0.96957 0.97184 1.69942 1.26232 1.22287 1.34783 0.86643 0.78114 0.78770 0.84401 1.20211 1.21226 1.20221 1.22113 0.96084 0.83832 0.98726 0.91833 0.88004 0.91780 0.90860 0.88803 0.89740 0.91026 0.90740 0.90432 0.76171 0.83038 0.84081 0.92520 0.92628 0.96409 0.96338 0.92828 0.87849 0.90566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.44 10.56 101.05 1.07 1.50 16 2 O -0.37 -3.95 9.21 -40.33 -0.37 -4.32 16 3 C 0.65 8.70 8.43 54.06 0.46 9.15 16 4 O -0.56 -9.76 15.54 -19.27 -0.30 -10.06 16 5 N -0.59 -6.59 2.97 -178.59 -0.53 -7.12 16 6 C 0.11 0.78 6.44 -3.71 -0.02 0.76 16 7 C -0.13 -0.80 6.08 -26.61 -0.16 -0.96 16 8 C -0.13 -0.93 5.35 -26.68 -0.14 -1.07 16 9 C 0.13 1.49 2.60 -67.83 -0.18 1.31 16 10 H 0.09 1.25 7.58 -51.93 -0.39 0.85 16 11 N -0.73 -8.82 5.08 -53.71 -0.27 -9.10 16 12 C 0.53 8.55 7.05 -10.98 -0.08 8.47 16 13 O -0.53 -10.52 15.91 5.56 0.09 -10.43 16 14 C 0.08 1.26 3.21 -68.86 -0.22 1.04 16 15 H 0.10 1.50 8.14 -51.93 -0.42 1.07 16 16 N -0.83 -14.45 8.94 -5.65 -0.05 -14.50 16 17 C -0.14 -2.67 4.78 -26.73 -0.13 -2.80 16 18 C 0.02 0.60 4.74 -27.88 -0.13 0.47 16 19 C -0.52 -14.37 9.11 -34.44 -0.31 -14.68 16 20 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 21 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 22 N -0.89 -26.02 13.29 55.43 0.74 -25.28 16 23 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 27 C 0.12 1.41 6.01 -3.74 -0.02 1.38 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.53 8.14 -51.94 -0.42 0.11 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.09 0.61 6.94 -51.93 -0.36 0.25 16 33 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.40 3.91 8.60 -40.82 -0.35 3.56 16 38 H 0.35 6.15 7.55 -39.29 -0.30 5.85 16 39 H 0.35 6.18 8.58 -39.29 -0.34 5.84 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 45 H 0.10 1.67 7.00 -51.93 -0.36 1.31 16 46 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 376.62 15.07 5.68 5.68 Total: -1.00 -34.86 376.62 -7.51 -42.37 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -7.50 Total: 10.34 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: 0.03 Total: 6.11 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: -0.12 Total: -55.99 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.58 Total: -24.82 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.86 -7.51 -42.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818099151.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.708 kcal (2) G-P(sol) polarization free energy of solvation -34.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds