Wall clock time and date at job start Fri Apr 10 2020 18:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34639 * 117.00312 * 2 1 4 4 O 1.21515 * 119.99783 * 359.97438 * 3 2 1 5 5 N 1.34774 * 120.00150 * 180.02562 * 3 2 1 6 6 C 1.46924 * 120.63173 * 359.97438 * 5 3 2 7 7 C 1.53194 * 108.77523 * 233.61049 * 6 5 3 8 8 C 1.53039 * 109.31481 * 305.36490 * 7 6 5 9 9 C 1.53045 * 109.53604 * 61.36511 * 8 7 6 10 10 H 1.08992 * 109.50015 * 58.61870 * 9 8 7 11 11 N 1.46504 * 109.49683 * 178.68698 * 9 8 7 12 12 C 1.34776 * 119.99805 * 204.93300 * 11 9 8 13 13 O 1.21279 * 120.00032 * 0.02562 * 12 11 9 14 14 C 1.50698 * 119.99790 * 179.97438 * 12 11 9 15 15 H 1.09008 * 109.46977 * 40.00639 * 14 12 11 16 16 N 1.46904 * 109.46837 * 159.99896 * 14 12 11 17 17 C 1.52997 * 109.47721 * 280.00489 * 14 12 11 18 18 C 1.53000 * 109.47060 * 175.00208 * 17 14 12 19 19 C 1.50703 * 109.46912 * 179.97438 * 18 17 14 20 20 H 1.08001 * 119.99776 * 0.02562 * 19 18 17 21 21 C 1.37877 * 120.00001 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00114 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99955 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46725 * 60.00489 * 23 21 19 25 25 H 1.48505 * 109.46988 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47116 * 300.00464 * 23 21 19 27 27 C 1.46933 * 120.60338 * 180.02562 * 5 3 2 28 28 H 1.08998 * 109.46805 * 60.00617 * 1 2 3 29 29 H 1.08993 * 109.46806 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46932 * 300.00225 * 1 2 3 31 31 H 1.09005 * 109.58865 * 113.82342 * 6 5 3 32 32 H 1.09003 * 109.70444 * 353.46910 * 6 5 3 33 33 H 1.08998 * 109.49921 * 185.41361 * 7 6 5 34 34 H 1.08998 * 109.49661 * 65.31850 * 7 6 5 35 35 H 1.09000 * 109.45838 * 301.34672 * 8 7 6 36 36 H 1.08995 * 109.46217 * 181.38463 * 8 7 6 37 37 H 0.97003 * 119.99913 * 24.92777 * 11 9 8 38 38 H 1.00898 * 110.99372 * 60.01160 * 16 14 12 39 39 H 1.00904 * 110.99944 * 183.95594 * 16 14 12 40 40 H 1.09002 * 109.47153 * 54.99889 * 17 14 12 41 41 H 1.09001 * 109.46832 * 295.00079 * 17 14 12 42 42 H 1.09001 * 109.47194 * 299.99650 * 18 17 14 43 43 H 1.08992 * 109.47399 * 59.99823 * 18 17 14 44 44 H 0.97000 * 120.00354 * 180.02562 * 22 21 19 45 45 H 1.09002 * 109.61598 * 6.61765 * 27 5 3 46 46 H 1.08997 * 109.56596 * 246.19051 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4092 1.2701 -0.0005 6 6 4.2229 0.0468 -0.0005 7 6 5.2129 0.1131 1.1667 8 6 6.0238 1.4073 1.0697 9 6 5.0820 2.6098 1.1662 10 1 4.5365 2.5699 2.1089 11 7 5.8624 3.8482 1.1048 12 6 5.3758 4.9792 1.6530 13 8 4.2921 4.9716 2.1976 14 6 6.1787 6.2529 1.5903 15 1 6.6537 6.3352 0.6126 16 7 5.2895 7.4031 1.8010 17 6 7.2532 6.2327 2.6793 18 6 8.1467 7.4666 2.5370 19 6 9.2047 7.4469 3.6101 20 1 9.2369 6.6354 4.3219 21 6 10.1323 8.4645 3.6823 22 7 10.0934 9.4525 2.8152 23 14 11.4433 8.4406 5.0128 24 1 12.2675 7.2131 4.8734 25 1 12.3106 9.6381 4.8747 26 1 10.7937 8.4517 6.3480 27 6 4.0901 2.5722 0.0000 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 4.7703 -0.0280 -0.9402 32 1 3.5776 -0.8239 0.1166 33 1 5.8866 -0.7426 1.1214 34 1 4.6657 0.0964 2.1092 35 1 6.5513 1.4348 0.1162 36 1 6.7460 1.4453 1.8852 37 1 6.7293 3.8541 0.6696 38 1 4.8369 7.3500 2.7013 39 1 5.7922 8.2721 1.6998 40 1 7.8583 5.3320 2.5759 41 1 6.7770 6.2400 3.6597 42 1 8.6229 7.4593 1.5566 43 1 7.5416 8.3672 2.6404 44 1 10.7462 10.1682 2.8657 45 1 3.3559 3.3690 0.1192 46 1 4.6262 2.7041 -0.9397 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000818099152.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:17 Heat of formation + Delta-G solvation = -156.176823 kcal Electronic energy + Delta-G solvation = -26507.924937 eV Core-core repulsion = 22623.839670 eV Total energy + Delta-G solvation = -3884.085267 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.87881 -41.02901 -39.23820 -37.43368 -37.06222 -35.79130 -34.82897 -33.42002 -31.68058 -31.22089 -28.76891 -28.04744 -26.31047 -25.85814 -23.97823 -22.67208 -22.26592 -21.34697 -20.81073 -19.20092 -18.86477 -18.20831 -18.07585 -17.71361 -17.18294 -16.56636 -16.31361 -15.97289 -15.77741 -15.55661 -15.48273 -15.13638 -14.92940 -14.59959 -14.55412 -14.36090 -14.00549 -13.87667 -13.78137 -13.44891 -13.05256 -12.92912 -12.74218 -12.58608 -12.53370 -12.18231 -12.05424 -11.85732 -11.79657 -11.74235 -11.67375 -11.59713 -11.30658 -10.75352 -10.54896 -10.45908 -9.76215 -9.63613 -8.20308 -6.30664 0.98843 1.40569 1.42304 1.50100 1.57435 1.63595 2.10200 2.40817 2.89273 3.13266 3.61283 3.71999 3.77305 3.79437 3.95944 4.04091 4.14876 4.16066 4.26123 4.32197 4.32618 4.44667 4.52578 4.66177 4.67688 4.69735 4.73894 4.84870 4.89681 5.01111 5.09826 5.12629 5.19880 5.22842 5.34644 5.47755 5.50547 5.67159 5.81904 6.07356 6.15708 6.22210 6.46373 6.53283 6.84827 7.10022 7.23493 7.38305 8.90156 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.026329 B = 0.002454 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.214036 B =11407.027759 C =12104.100590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.366 6.366 3 C 0.640 3.360 4 O -0.614 6.614 5 N -0.588 5.588 6 C 0.105 3.895 7 C -0.126 4.126 8 C -0.122 4.122 9 C 0.137 3.863 10 H 0.058 0.942 11 N -0.710 5.710 12 C 0.526 3.474 13 O -0.572 6.572 14 C 0.081 3.919 15 H 0.114 0.886 16 N -0.833 5.833 17 C -0.119 4.119 18 C 0.030 3.970 19 C -0.544 4.544 20 H 0.055 0.945 21 C 0.004 3.996 22 N -0.927 5.927 23 Si 0.959 3.041 24 H -0.265 1.265 25 H -0.284 1.284 26 H -0.273 1.273 27 C 0.121 3.879 28 H 0.059 0.941 29 H 0.143 0.857 30 H 0.053 0.947 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.118 0.882 34 H 0.056 0.944 35 H 0.100 0.900 36 H 0.083 0.917 37 H 0.419 0.581 38 H 0.342 0.658 39 H 0.353 0.647 40 H 0.071 0.929 41 H 0.041 0.959 42 H 0.004 0.996 43 H 0.000 1.000 44 H 0.264 0.736 45 H 0.058 0.942 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.028 -25.043 -8.600 28.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.279 6.279 3 C 0.395 3.605 4 O -0.506 6.506 5 N -0.328 5.328 6 C -0.016 4.016 7 C -0.164 4.164 8 C -0.160 4.160 9 C 0.031 3.969 10 H 0.077 0.923 11 N -0.363 5.363 12 C 0.313 3.687 13 O -0.450 6.450 14 C -0.034 4.034 15 H 0.132 0.868 16 N -0.364 5.364 17 C -0.159 4.159 18 C -0.007 4.007 19 C -0.582 4.582 20 H 0.074 0.926 21 C -0.194 4.194 22 N -0.567 5.567 23 Si 0.784 3.216 24 H -0.190 1.190 25 H -0.210 1.210 26 H -0.198 1.198 27 C -0.002 4.002 28 H 0.078 0.922 29 H 0.161 0.839 30 H 0.072 0.928 31 H 0.117 0.883 32 H 0.121 0.879 33 H 0.136 0.864 34 H 0.075 0.925 35 H 0.118 0.882 36 H 0.101 0.899 37 H 0.257 0.743 38 H 0.155 0.845 39 H 0.168 0.832 40 H 0.090 0.910 41 H 0.060 0.940 42 H 0.023 0.977 43 H 0.018 0.982 44 H 0.072 0.928 45 H 0.077 0.923 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.394 -24.907 -8.909 28.802 hybrid contribution 1.255 1.117 1.420 2.200 sum -10.139 -23.790 -7.489 26.923 Atomic orbital electron populations 1.23509 0.72965 1.05789 1.02271 1.86219 1.25556 1.29336 1.86770 1.18347 0.83842 0.82248 0.76105 1.91008 1.65354 1.36601 1.57620 1.46957 1.01529 1.09257 1.75059 1.22127 0.93906 0.84986 1.00577 1.21906 0.98148 0.98364 0.98015 1.21860 0.97337 0.91683 1.05130 1.21205 0.93067 0.84902 0.97719 0.92341 1.45803 1.23150 1.08211 1.59155 1.20845 0.85550 0.85665 0.76648 1.90664 1.23292 1.85851 1.45152 1.21440 0.91463 0.89099 1.01389 0.86828 1.58761 1.33892 1.04403 1.39388 1.22123 0.96359 1.00610 0.96823 1.18968 0.93407 0.92536 0.95827 1.21594 1.13956 1.07741 1.14952 0.92637 1.25876 1.00134 0.95146 0.98274 1.70053 1.37238 1.11773 1.37593 0.85595 0.78854 0.77792 0.79370 1.19006 1.20950 1.19797 1.21945 0.95082 0.83360 0.99840 0.92221 0.83928 0.92775 0.88309 0.87934 0.86414 0.92487 0.88165 0.89886 0.74278 0.84485 0.83204 0.91010 0.94035 0.97728 0.98196 0.92762 0.92350 0.88355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.69 10.56 113.37 1.20 1.89 16 2 O -0.37 -7.22 9.21 -55.48 -0.51 -7.74 16 3 C 0.64 16.83 8.43 129.79 1.09 17.92 16 4 O -0.61 -21.78 15.54 19.79 0.31 -21.47 16 5 N -0.59 -12.09 2.97 -949.31 -2.82 -14.91 16 6 C 0.10 1.14 6.44 86.36 0.56 1.69 16 7 C -0.13 -1.16 6.08 30.67 0.19 -0.98 16 8 C -0.12 -1.43 5.36 30.62 0.16 -1.26 16 9 C 0.14 2.90 2.60 45.06 0.12 3.02 16 10 H 0.06 1.66 7.58 -2.39 -0.02 1.64 16 11 N -0.71 -16.28 5.08 -442.23 -2.25 -18.53 16 12 C 0.53 17.10 7.04 87.66 0.62 17.72 16 13 O -0.57 -23.40 15.91 -3.03 -0.05 -23.45 16 14 C 0.08 2.70 3.21 44.17 0.14 2.85 16 15 H 0.11 3.40 8.14 -2.38 -0.02 3.38 16 16 N -0.83 -29.66 8.94 -171.79 -1.54 -31.20 16 17 C -0.12 -4.55 4.78 30.59 0.15 -4.40 16 18 C 0.03 1.44 4.74 29.85 0.14 1.58 16 19 C -0.54 -29.54 9.11 25.60 0.23 -29.31 16 20 H 0.06 2.92 7.74 -2.91 -0.02 2.90 16 21 C 0.00 0.23 5.46 84.66 0.46 0.69 16 22 N -0.93 -54.09 13.29 21.45 0.28 -53.81 16 23 Si 0.96 42.99 29.54 68.60 2.03 45.01 16 24 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 25 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 26 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 27 C 0.12 2.77 6.01 86.35 0.52 3.29 16 28 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.14 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.10 0.99 6.94 -2.39 -0.02 0.97 16 33 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.42 7.02 8.60 -92.71 -0.80 6.22 16 38 H 0.34 12.62 8.58 -89.70 -0.77 11.85 16 39 H 0.35 12.62 7.55 -89.69 -0.68 11.94 16 40 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 41 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 43 H 0.00 -0.01 6.87 -2.39 -0.02 -0.03 16 44 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 45 H 0.06 1.91 7.00 -2.39 -0.02 1.89 16 46 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -78.27 376.62 -0.21 -78.47 By element: Atomic # 1 Polarization: 34.16 SS G_CDS: -1.24 Total: 32.92 kcal Atomic # 6 Polarization: 9.12 SS G_CDS: 5.58 Total: 14.70 kcal Atomic # 7 Polarization: -112.13 SS G_CDS: -6.32 Total: -118.45 kcal Atomic # 8 Polarization: -52.41 SS G_CDS: -0.25 Total: -52.66 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.01 kcal Total: -78.27 -0.21 -78.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818099152.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.705 kcal (2) G-P(sol) polarization free energy of solvation -78.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds