Wall clock time and date at job start Fri Apr 10 2020 18:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46728 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47317 * 59.99947 * 4 3 2 6 6 C 1.52997 * 109.47269 * 299.99603 * 4 3 2 7 7 N 1.46906 * 109.46897 * 179.97438 * 4 3 2 8 8 C 1.46961 * 110.99734 * 303.80004 * 7 4 3 9 9 C 1.53049 * 109.36292 * 176.81247 * 8 7 4 10 10 N 1.46955 * 109.36716 * 58.39846 * 9 8 7 11 11 C 1.46896 * 111.00246 * 176.81294 * 10 9 8 12 12 C 1.50700 * 109.47191 * 293.79978 * 11 10 9 13 13 O 1.21283 * 119.99698 * 359.97438 * 12 11 10 14 14 N 1.34778 * 120.00222 * 179.97438 * 12 11 10 15 15 C 1.46496 * 119.99761 * 180.02562 * 14 12 11 16 16 C 1.50706 * 109.46741 * 180.02562 * 15 14 12 17 17 H 1.07999 * 120.00238 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99778 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99915 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00041 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47129 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47498 * 119.99570 * 20 18 16 23 23 H 1.48495 * 109.47060 * 239.99795 * 20 18 16 24 24 C 1.46961 * 110.88206 * 300.68030 * 10 9 8 25 25 C 1.46952 * 110.99889 * 179.97438 * 7 4 3 26 26 H 1.08999 * 109.46926 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47442 * 300.00036 * 1 2 3 28 28 H 1.08997 * 109.47171 * 60.00232 * 1 2 3 29 29 H 1.09000 * 109.47187 * 59.99767 * 3 2 1 30 30 H 1.09001 * 109.46558 * 299.99719 * 3 2 1 31 31 H 1.09001 * 109.46832 * 179.97438 * 5 4 3 32 32 H 1.09002 * 109.47153 * 299.99641 * 5 4 3 33 33 H 1.08996 * 109.46952 * 59.99813 * 5 4 3 34 34 H 1.09000 * 109.47140 * 300.00547 * 6 4 3 35 35 H 1.09001 * 109.47230 * 59.99691 * 6 4 3 36 36 H 1.09001 * 109.47375 * 180.02562 * 6 4 3 37 37 H 1.09003 * 109.48904 * 296.77641 * 8 7 4 38 38 H 1.09002 * 109.49205 * 56.84173 * 8 7 4 39 39 H 1.09008 * 109.48964 * 298.43140 * 9 8 7 40 40 H 1.09002 * 109.49130 * 178.36713 * 9 8 7 41 41 H 1.09004 * 109.47192 * 53.79854 * 11 10 9 42 42 H 1.08996 * 109.47259 * 173.79971 * 11 10 9 43 43 H 0.97002 * 119.99894 * 0.02562 * 14 12 11 44 44 H 1.09001 * 109.47379 * 299.99447 * 15 14 12 45 45 H 1.08996 * 109.47302 * 60.00013 * 15 14 12 46 46 H 0.97005 * 119.99682 * 179.97438 * 19 18 16 47 47 H 1.09003 * 109.48904 * 299.35325 * 24 10 9 48 48 H 1.08989 * 109.49349 * 179.28524 * 24 10 9 49 49 H 1.08999 * 109.49234 * 303.15264 * 25 7 4 50 50 H 1.08996 * 109.49284 * 63.22180 * 25 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9864 0.4256 -1.2502 6 6 3.9874 0.4253 1.2483 7 7 4.1329 2.5267 -0.0013 8 6 3.6493 3.3179 -1.1414 9 6 4.2316 4.7311 -1.0617 10 7 5.6991 4.6543 -1.0623 11 6 6.2966 5.9962 -1.0630 12 6 5.9766 6.6880 -2.3630 13 8 5.3162 6.1189 -3.2062 14 7 6.4242 7.9391 -2.5887 15 6 6.1125 8.6117 -3.8523 16 6 6.7256 9.9884 -3.8530 17 1 7.2904 10.3285 -2.9976 18 6 6.5645 10.8142 -4.9453 19 7 5.8762 10.4003 -5.9867 20 14 7.3249 12.5204 -4.9465 21 1 8.0439 12.7428 -3.6663 22 1 8.2801 12.6359 -6.0776 23 1 6.2549 13.5391 -5.0961 24 6 6.1827 3.8631 0.0778 25 6 5.6004 2.4498 -0.0013 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6885 1.8465 0.8900 30 1 1.6885 1.8463 -0.8900 31 1 5.0730 0.3400 -1.2508 32 1 3.5431 -0.5702 -1.2501 33 1 3.6644 0.9667 -2.1399 34 1 3.6661 0.9660 2.1385 35 1 3.5440 -0.5705 1.2484 36 1 5.0740 0.3396 1.2481 37 1 3.9657 2.8462 -2.0717 38 1 2.5610 3.3708 -1.1119 39 1 3.8930 5.2128 -0.1443 40 1 3.8975 5.3111 -1.9220 41 1 5.8902 6.5753 -0.2337 42 1 7.3777 5.9127 -0.9524 43 1 6.9526 8.3941 -1.9144 44 1 6.5190 8.0330 -4.6818 45 1 5.0314 8.6949 -3.9626 46 1 5.7626 10.9814 -6.7550 47 1 5.8663 4.3348 1.0081 48 1 7.2709 3.8101 0.0483 49 1 5.9342 1.8700 0.8592 50 1 5.9393 1.9681 -0.9184 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823460974.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:24 Heat of formation + Delta-G solvation = -89.615683 kcal Electronic energy + Delta-G solvation = -27057.799870 eV Core-core repulsion = 23312.434005 eV Total energy + Delta-G solvation = -3745.365865 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.26830 -40.37125 -38.77671 -37.13527 -36.03848 -34.34354 -33.19468 -32.08160 -30.14358 -28.47146 -28.34120 -28.28309 -26.63414 -25.54976 -24.15995 -24.07705 -21.44659 -21.26095 -19.76731 -18.93260 -17.94101 -17.51564 -17.17518 -16.85983 -16.79997 -16.51724 -16.35605 -15.91927 -15.75982 -15.48830 -15.37670 -15.15093 -14.77599 -14.36173 -14.29942 -14.15900 -14.05214 -13.82599 -13.26697 -12.99268 -12.91651 -12.87242 -12.78543 -12.70473 -12.59921 -12.35264 -12.25494 -12.19756 -12.07888 -11.88898 -11.63159 -11.45262 -11.31267 -10.81208 -10.61120 -10.58192 -9.79182 -9.38916 -9.18923 -8.29352 -6.45783 1.42997 1.44115 1.57613 1.82363 2.27972 2.45359 2.49313 3.05559 3.06963 3.16977 3.78099 3.81313 3.90819 3.99187 4.14062 4.17318 4.24195 4.31463 4.36675 4.38915 4.47458 4.50623 4.53030 4.55899 4.62631 4.66341 4.76320 4.79621 4.85340 4.88910 4.92074 4.96730 5.01878 5.03214 5.11324 5.12463 5.25224 5.29584 5.40736 5.50370 5.71269 5.85182 5.89587 5.93646 6.13352 6.17251 6.24164 6.66183 6.97440 7.24048 7.55878 8.83059 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.028597 B = 0.002267 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.895916 B =12347.128497 C =12934.364322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.075 3.925 4 C 0.108 3.892 5 C -0.170 4.170 6 C -0.127 4.127 7 N -0.524 5.524 8 C 0.062 3.938 9 C 0.060 3.940 10 N -0.542 5.542 11 C 0.051 3.949 12 C 0.494 3.506 13 O -0.585 6.585 14 N -0.710 5.710 15 C 0.269 3.731 16 C -0.554 4.554 17 H 0.085 0.915 18 C 0.001 3.999 19 N -0.932 5.932 20 Si 0.985 3.015 21 H -0.252 1.252 22 H -0.279 1.279 23 H -0.279 1.279 24 C 0.060 3.940 25 C 0.056 3.944 26 H 0.100 0.900 27 H 0.049 0.951 28 H 0.041 0.959 29 H 0.060 0.940 30 H 0.044 0.956 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.041 0.959 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.029 0.971 38 H 0.083 0.917 39 H 0.042 0.958 40 H 0.063 0.937 41 H 0.084 0.916 42 H 0.130 0.870 43 H 0.408 0.592 44 H -0.016 1.016 45 H -0.015 1.015 46 H 0.268 0.732 47 H 0.051 0.949 48 H 0.099 0.901 49 H 0.106 0.894 50 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.685 -19.219 19.303 27.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C -0.002 4.002 4 C 0.019 3.981 5 C -0.229 4.229 6 C -0.184 4.184 7 N -0.250 5.250 8 C -0.066 4.066 9 C -0.068 4.068 10 N -0.268 5.268 11 C -0.080 4.080 12 C 0.281 3.719 13 O -0.466 6.466 14 N -0.361 5.361 15 C 0.146 3.854 16 C -0.592 4.592 17 H 0.103 0.897 18 C -0.198 4.198 19 N -0.571 5.571 20 Si 0.808 3.192 21 H -0.175 1.175 22 H -0.205 1.205 23 H -0.205 1.205 24 C -0.068 4.068 25 C -0.072 4.072 26 H 0.118 0.882 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.060 0.940 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.047 0.953 38 H 0.101 0.899 39 H 0.060 0.940 40 H 0.082 0.918 41 H 0.102 0.898 42 H 0.147 0.853 43 H 0.244 0.756 44 H 0.002 0.998 45 H 0.003 0.997 46 H 0.077 0.923 47 H 0.070 0.930 48 H 0.117 0.883 49 H 0.124 0.876 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -4.109 -19.745 18.546 27.399 hybrid contribution -0.073 1.377 -0.760 1.575 sum -4.182 -18.367 17.786 25.907 Atomic orbital electron populations 1.22901 0.79665 1.03822 1.00550 1.87787 1.21062 1.27727 1.95518 1.22486 0.92750 0.84497 1.00492 1.20981 0.92640 0.88026 0.96477 1.22337 1.01597 1.01360 0.97608 1.21760 1.01484 0.99683 0.95505 1.62399 1.07647 1.13189 1.41751 1.22100 0.99560 0.92868 0.92115 1.22154 0.87321 0.96962 1.00411 1.61740 1.07247 1.13470 1.44294 1.21920 1.03092 0.89905 0.93054 1.21388 0.79157 0.81414 0.89963 1.90611 1.41169 1.66016 1.48774 1.46190 1.54398 1.15274 1.20268 1.18484 0.93912 0.91610 0.81394 1.21667 1.34771 0.99096 1.03640 0.89730 1.26092 0.95368 1.03794 0.94558 1.70152 1.41103 1.38906 1.06895 0.85101 0.77943 0.77215 0.78894 1.17528 1.20518 1.20499 1.22286 1.00618 0.92942 0.90911 1.22288 0.86473 0.96609 1.01822 0.88194 0.93198 0.93994 0.92210 0.93831 0.92049 0.91256 0.94028 0.91887 0.91490 0.91567 0.95266 0.89883 0.94002 0.91828 0.89790 0.85265 0.75648 0.99758 0.99680 0.92300 0.93045 0.88319 0.87580 0.94572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.60 16 2 O -0.40 -7.46 9.35 -148.98 -1.39 -8.86 16 3 C 0.07 1.38 4.46 71.98 0.32 1.71 16 4 C 0.11 1.99 0.54 3.52 0.00 1.99 16 5 C -0.17 -3.38 7.63 71.98 0.55 -2.83 16 6 C -0.13 -1.92 8.10 71.98 0.58 -1.33 16 7 N -0.52 -10.68 4.53 -846.20 -3.83 -14.51 16 8 C 0.06 1.56 4.83 86.31 0.42 1.98 16 9 C 0.06 1.73 5.26 86.31 0.45 2.18 16 10 N -0.54 -14.82 4.45 -900.28 -4.00 -18.82 16 11 C 0.05 1.36 5.45 85.56 0.47 1.83 16 12 C 0.49 19.70 7.53 87.66 0.66 20.36 16 13 O -0.59 -29.14 14.34 -3.04 -0.04 -29.18 16 14 N -0.71 -29.89 5.55 -466.79 -2.59 -32.48 16 15 C 0.27 14.88 5.43 85.64 0.46 15.34 16 16 C -0.55 -30.19 9.28 25.60 0.24 -29.96 16 17 H 0.08 4.15 7.60 -2.91 -0.02 4.13 16 18 C 0.00 0.07 5.46 84.66 0.46 0.53 16 19 N -0.93 -56.65 13.29 21.45 0.28 -56.36 16 20 Si 0.99 42.40 29.54 68.60 2.03 44.43 16 21 H -0.25 -9.95 7.11 99.48 0.71 -9.25 16 22 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 23 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 24 C 0.06 1.15 5.61 86.31 0.48 1.63 16 25 C 0.06 1.03 4.83 86.31 0.42 1.45 16 26 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.04 0.87 6.28 -2.39 -0.01 0.85 16 31 H 0.06 1.17 6.47 -2.39 -0.02 1.15 16 32 H 0.07 1.34 7.68 -2.39 -0.02 1.33 16 33 H 0.04 0.95 6.56 -2.39 -0.02 0.94 16 34 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.07 1.03 7.68 -2.39 -0.02 1.01 16 36 H 0.07 0.86 6.34 -2.39 -0.02 0.85 16 37 H 0.03 0.86 6.56 -2.39 -0.02 0.84 16 38 H 0.08 1.95 6.06 -2.39 -0.01 1.93 16 39 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 40 H 0.06 2.36 5.85 -2.39 -0.01 2.34 16 41 H 0.08 1.86 8.12 -2.38 -0.02 1.84 16 42 H 0.13 2.69 8.03 -2.39 -0.02 2.67 16 43 H 0.41 13.95 8.32 -92.71 -0.77 13.18 16 44 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 45 H -0.01 -0.92 8.14 -2.39 -0.02 -0.94 16 46 H 0.27 15.17 8.31 -92.70 -0.77 14.40 16 47 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 48 H 0.10 1.53 8.07 -2.39 -0.02 1.51 16 49 H 0.11 1.48 6.14 -2.39 -0.01 1.47 16 50 H 0.04 0.78 6.48 -2.39 -0.02 0.76 16 Total: -1.00 -72.94 381.58 -2.63 -75.57 By element: Atomic # 1 Polarization: 23.58 SS G_CDS: 0.15 Total: 23.73 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: 6.76 Total: 16.48 kcal Atomic # 7 Polarization: -112.04 SS G_CDS: -10.14 Total: -122.17 kcal Atomic # 8 Polarization: -36.60 SS G_CDS: -1.44 Total: -38.04 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -72.94 -2.63 -75.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823460974.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.042 kcal (2) G-P(sol) polarization free energy of solvation -72.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds