Wall clock time and date at job start Fri Apr 10 2020 18:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46903 * 109.47104 * 2 1 4 4 C 1.46903 * 111.00057 * 294.26707 * 3 2 1 5 5 C 1.53004 * 109.47116 * 293.50468 * 4 3 2 6 6 N 1.46496 * 109.46933 * 185.66800 * 5 4 3 7 7 C 1.34782 * 119.99759 * 180.02562 * 6 5 4 8 8 O 1.21579 * 119.99944 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99941 * 180.02562 * 7 6 5 10 10 C 1.47022 * 125.64959 * 359.68956 * 9 7 6 11 11 C 1.54330 * 107.27027 * 178.85034 * 10 9 7 12 12 C 1.55167 * 103.01860 * 338.13984 * 11 10 9 13 13 O 1.42893 * 111.00087 * 277.23356 * 12 11 10 14 14 C 1.50690 * 111.03718 * 153.39546 * 12 11 10 15 15 H 1.08003 * 120.00149 * 273.80548 * 14 12 11 16 16 C 1.37871 * 120.00300 * 93.80829 * 14 12 11 17 17 N 1.31519 * 120.00428 * 172.15211 * 16 14 12 18 18 Si 1.86802 * 119.99711 * 352.14755 * 16 14 12 19 19 H 1.48503 * 109.47028 * 84.74562 * 18 16 14 20 20 H 1.48511 * 109.47108 * 204.73943 * 18 16 14 21 21 H 1.48500 * 109.47566 * 324.74086 * 18 16 14 22 22 C 1.47423 * 125.64858 * 179.97438 * 9 7 6 23 23 C 1.46902 * 111.00188 * 58.22008 * 3 2 1 24 24 C 1.53010 * 109.46777 * 52.25226 * 23 3 2 25 25 C 1.52991 * 109.47330 * 172.25554 * 23 3 2 26 26 H 1.09003 * 109.47231 * 304.74209 * 1 2 3 27 27 H 1.09004 * 109.47099 * 64.73623 * 1 2 3 28 28 H 1.08999 * 109.47499 * 184.73346 * 1 2 3 29 29 H 1.09000 * 109.47261 * 240.00310 * 2 1 3 30 30 H 1.08999 * 109.47112 * 119.99802 * 2 1 3 31 31 H 1.08997 * 109.46983 * 53.50574 * 4 3 2 32 32 H 1.09001 * 109.47085 * 173.50532 * 4 3 2 33 33 H 1.08994 * 109.47268 * 305.67307 * 5 4 3 34 34 H 1.09000 * 109.46786 * 65.66769 * 5 4 3 35 35 H 0.96998 * 120.00395 * 0.02562 * 6 5 4 36 36 H 1.09007 * 109.87796 * 298.39389 * 10 9 7 37 37 H 1.09001 * 109.88228 * 59.55549 * 10 9 7 38 38 H 1.08997 * 110.85272 * 219.67515 * 11 10 9 39 39 H 1.09000 * 110.51904 * 96.44698 * 11 10 9 40 40 H 0.96701 * 114.00210 * 177.40574 * 13 12 11 41 41 H 0.96994 * 120.00063 * 180.02562 * 17 16 14 42 42 H 1.08998 * 110.36745 * 322.92812 * 22 9 7 43 43 H 1.09001 * 110.36709 * 85.14523 * 22 9 7 44 44 H 1.09002 * 109.47182 * 292.26207 * 23 3 2 45 45 H 1.09000 * 109.46701 * 62.05433 * 24 23 3 46 46 H 1.09000 * 109.46518 * 182.04823 * 24 23 3 47 47 H 1.08996 * 109.47140 * 302.04886 * 24 23 3 48 48 H 1.09009 * 109.47053 * 299.99984 * 25 23 3 49 49 H 1.08999 * 109.47358 * 60.00070 * 25 23 3 50 50 H 1.09006 * 109.47317 * 180.02562 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6637 2.0693 -1.2503 5 6 2.4182 1.4267 -2.4160 6 7 2.1692 2.1922 -3.6400 7 6 2.7349 1.8084 -4.8016 8 8 3.4522 0.8272 -4.8334 9 7 2.5063 2.5129 -5.9275 10 6 1.6597 3.7104 -6.0320 11 6 1.7202 4.1877 -7.4984 12 6 3.0403 3.5580 -8.0168 13 8 4.1663 4.3613 -7.6581 14 6 2.9876 3.3416 -9.5072 15 1 2.5580 2.4346 -9.9063 16 6 3.4879 4.3013 -10.3613 17 7 3.5843 4.0501 -11.6487 18 14 4.0288 5.9585 -9.6900 19 1 5.4273 5.8615 -9.2000 20 1 3.9513 6.9781 -10.7670 21 1 3.1379 6.3534 -8.5694 22 6 3.0588 2.2069 -7.2596 23 6 1.5142 2.1222 1.1658 24 6 1.8209 1.3330 2.4403 25 6 2.1935 3.4911 1.2375 26 1 -0.3634 0.5857 0.8445 27 1 -0.3633 0.4386 -0.9294 28 1 -0.3634 -1.0241 0.0848 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.5905 1.9816 -1.4196 32 1 1.9353 3.1224 -1.1781 33 1 3.4865 1.4241 -2.2000 34 1 2.0725 0.4019 -2.5516 35 1 1.5972 2.9751 -3.6145 36 1 0.6328 3.4630 -5.7627 37 1 2.0399 4.4917 -5.3738 38 1 1.7652 5.2755 -7.5509 39 1 0.8659 3.8085 -8.0592 40 1 5.0171 3.9880 -7.9260 41 1 3.9366 4.7252 -12.2495 42 1 4.0799 1.8359 -7.1707 43 1 2.4333 1.4752 -7.7709 44 1 0.4364 2.2558 1.0719 45 1 2.9002 1.2308 2.5533 46 1 1.4139 1.8622 3.3020 47 1 1.3672 0.3443 2.3735 48 1 3.2713 3.3573 1.3315 49 1 1.9750 4.0532 0.3296 50 1 1.8188 4.0379 2.1028 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826098117.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:29 Heat of formation + Delta-G solvation = -66.766192 kcal Electronic energy + Delta-G solvation = -27217.398573 eV Core-core repulsion = 23473.023536 eV Total energy + Delta-G solvation = -3744.375036 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.99439 -39.28194 -37.76107 -34.89280 -34.71236 -32.96789 -32.37015 -31.12077 -30.09264 -28.39901 -27.57949 -27.25826 -25.03909 -23.88050 -22.64210 -21.87651 -19.99692 -19.81345 -19.32546 -17.82682 -17.37517 -16.96488 -16.21695 -15.69313 -15.45485 -15.20204 -15.04667 -14.78046 -14.56007 -14.03571 -13.82292 -13.52637 -13.31209 -13.18128 -12.79928 -12.72006 -12.53200 -12.43558 -12.39103 -12.14892 -12.00197 -11.84607 -11.79142 -11.59344 -11.50822 -11.33861 -11.00471 -10.88740 -10.82200 -10.51013 -10.37448 -10.21250 -9.81332 -9.29142 -8.95871 -8.67144 -8.61735 -8.54599 -7.96400 -6.21856 -4.32949 2.82942 3.42666 3.50412 3.55481 3.60823 3.66639 4.32295 4.45740 4.49447 4.58255 4.61715 4.79914 4.90491 4.97185 4.99250 5.00061 5.11489 5.13293 5.15985 5.28043 5.35226 5.37357 5.47160 5.52413 5.57283 5.59380 5.66642 5.73544 5.77195 5.80001 5.84921 5.88584 5.94460 6.02396 6.12166 6.51785 6.55859 6.58627 6.67246 6.73691 6.76501 6.78188 7.05599 7.33906 7.46574 8.09400 8.31088 8.63399 8.80280 8.92666 9.39084 10.87171 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.029387 B = 0.002575 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.564154 B =10872.079754 C =11301.973542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.040 3.960 3 N -0.527 5.527 4 C 0.038 3.962 5 C 0.145 3.855 6 N -0.750 5.750 7 C 0.720 3.280 8 O -0.597 6.597 9 N -0.628 5.628 10 C 0.102 3.898 11 C -0.119 4.119 12 C 0.219 3.781 13 O -0.560 6.560 14 C -0.553 4.553 15 H 0.082 0.918 16 C 0.073 3.927 17 N -0.886 5.886 18 Si 0.951 3.049 19 H -0.292 1.292 20 H -0.326 1.326 21 H -0.273 1.273 22 C 0.109 3.891 23 C 0.075 3.925 24 C -0.149 4.149 25 C -0.148 4.148 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.043 0.957 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.393 0.607 36 H 0.053 0.947 37 H 0.056 0.944 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.374 0.626 41 H 0.267 0.733 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.043 0.957 45 H 0.064 0.936 46 H 0.058 0.942 47 H 0.059 0.941 48 H 0.065 0.935 49 H 0.056 0.944 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.055 -2.153 25.508 26.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.088 4.088 3 N -0.251 5.251 4 C -0.091 4.091 5 C 0.020 3.980 6 N -0.407 5.407 7 C 0.422 3.578 8 O -0.476 6.476 9 N -0.365 5.365 10 C -0.021 4.021 11 C -0.158 4.158 12 C 0.178 3.822 13 O -0.368 6.368 14 C -0.591 4.591 15 H 0.100 0.900 16 C -0.133 4.133 17 N -0.521 5.521 18 Si 0.787 3.213 19 H -0.220 1.220 20 H -0.258 1.258 21 H -0.199 1.199 22 C -0.013 4.013 23 C -0.033 4.033 24 C -0.207 4.207 25 C -0.205 4.205 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.061 0.939 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.226 0.774 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.223 0.777 41 H 0.077 0.923 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.061 0.939 45 H 0.084 0.916 46 H 0.077 0.923 47 H 0.078 0.922 48 H 0.084 0.916 49 H 0.075 0.925 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.410 -2.535 25.661 26.571 hybrid contribution -0.594 0.889 -0.065 1.071 sum -7.004 -1.646 25.596 26.588 Atomic orbital electron populations 1.22436 0.98229 1.02520 1.02064 1.22322 0.92957 0.90071 1.03429 1.62164 1.59429 1.02178 1.01346 1.22324 0.98080 0.99293 0.89374 1.21013 1.00818 0.94609 0.81535 1.44990 1.54774 1.33354 1.07550 1.15404 0.80484 0.82470 0.79433 1.90889 1.42998 1.28609 1.85099 1.47689 1.51386 1.29291 1.08126 1.22038 0.93140 0.87035 0.99932 1.22921 0.99377 1.01641 0.91826 1.20237 0.83250 0.85029 0.93667 1.86098 1.17527 1.50589 1.82587 1.21120 1.43366 1.07043 0.87523 0.89975 1.25135 0.93821 0.99633 0.94675 1.69966 1.43529 1.35051 1.03505 0.85672 0.79108 0.80976 0.75547 1.22004 1.25779 1.19883 1.22955 0.98773 0.99866 0.79737 1.21619 0.97034 0.94173 0.90477 1.21946 1.02719 1.00031 0.95983 1.21905 1.01761 0.95280 1.01577 0.92368 0.92421 0.91975 0.90096 0.90073 0.93891 0.89852 0.90900 0.91975 0.77370 0.92848 0.92530 0.90232 0.89640 0.77741 0.92339 0.91215 0.91320 0.93862 0.91646 0.92297 0.92242 0.91602 0.92497 0.92287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.36 9.06 37.15 0.34 -1.02 16 2 C 0.04 0.31 5.35 -3.83 -0.02 0.29 16 3 N -0.53 -4.45 4.58 -226.64 -1.04 -5.49 16 4 C 0.04 0.33 4.78 -3.82 -0.02 0.32 16 5 C 0.15 1.74 5.48 -4.04 -0.02 1.71 16 6 N -0.75 -10.25 5.52 -65.23 -0.36 -10.61 16 7 C 0.72 13.27 8.49 -86.92 -0.74 12.53 16 8 O -0.60 -13.21 16.60 5.30 0.09 -13.12 16 9 N -0.63 -11.57 3.33 -176.24 -0.59 -12.15 16 10 C 0.10 1.62 6.15 -3.06 -0.02 1.60 16 11 C -0.12 -2.28 5.92 -24.89 -0.15 -2.42 16 12 C 0.22 4.79 0.70 -89.63 -0.06 4.72 16 13 O -0.56 -12.21 8.85 -35.23 -0.31 -12.53 16 14 C -0.55 -14.41 8.86 -34.45 -0.31 -14.71 16 15 H 0.08 2.33 8.00 -52.48 -0.42 1.91 16 16 C 0.07 1.98 5.46 -17.82 -0.10 1.88 16 17 N -0.89 -25.88 13.96 55.43 0.77 -25.11 16 18 Si 0.95 22.94 24.64 -169.99 -4.19 18.75 16 19 H -0.29 -6.92 7.04 56.52 0.40 -6.52 16 20 H -0.33 -8.11 7.11 56.52 0.40 -7.71 16 21 H -0.27 -6.43 5.64 56.52 0.32 -6.11 16 22 C 0.11 2.26 6.09 -2.54 -0.02 2.25 16 23 C 0.07 0.53 2.04 -67.71 -0.14 0.40 16 24 C -0.15 -0.91 8.65 37.16 0.32 -0.59 16 25 C -0.15 -1.02 9.09 37.15 0.34 -0.68 16 26 H 0.06 0.39 6.02 -51.93 -0.31 0.07 16 27 H 0.06 0.45 6.64 -51.93 -0.34 0.10 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.71 6.37 -51.93 -0.33 0.38 16 30 H 0.08 0.57 6.27 -51.93 -0.33 0.25 16 31 H 0.04 0.36 6.28 -51.93 -0.33 0.04 16 32 H 0.08 0.71 5.96 -51.93 -0.31 0.40 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.06 0.79 6.72 -51.93 -0.35 0.44 16 35 H 0.39 4.43 7.46 -40.82 -0.30 4.13 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.08 1.55 6.72 -51.93 -0.35 1.20 16 39 H 0.09 1.59 8.03 -51.93 -0.42 1.17 16 40 H 0.37 7.54 8.58 45.56 0.39 7.93 16 41 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.07 1.50 8.04 -51.93 -0.42 1.08 16 43 H 0.07 1.45 7.99 -51.93 -0.41 1.03 16 44 H 0.04 0.31 6.61 -51.93 -0.34 -0.03 16 45 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.06 0.35 5.89 -51.93 -0.31 0.04 16 48 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 49 H 0.06 0.40 6.29 -51.93 -0.33 0.08 16 50 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 374.68 15.07 5.65 5.65 Total: -1.00 -31.89 374.68 -8.37 -40.27 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -7.81 Total: 8.06 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: -0.59 Total: 6.27 kcal Atomic # 7 Polarization: -52.15 SS G_CDS: -1.21 Total: -53.35 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: -0.22 Total: -25.65 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -4.19 Total: 18.75 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.89 -8.37 -40.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826098117.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.501 kcal (2) G-P(sol) polarization free energy of solvation -31.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds