Wall clock time and date at job start Fri Apr 10 2020 18:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99853 * 2 1 4 4 H 1.48493 * 109.47538 * 270.00125 * 3 2 1 5 5 H 1.48504 * 109.47004 * 30.00648 * 3 2 1 6 6 H 1.48507 * 109.47060 * 150.00052 * 3 2 1 7 7 C 1.37876 * 120.00555 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00472 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99140 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.46502 * 180.02562 * 9 7 2 11 11 C 1.46894 * 110.99925 * 170.00033 * 10 9 7 12 12 C 1.53234 * 109.34173 * 187.24962 * 11 10 9 13 13 N 1.47079 * 108.52202 * 306.16803 * 12 11 10 14 14 C 1.34779 * 120.88359 * 231.18325 * 13 12 11 15 15 O 1.21577 * 119.99785 * 184.99536 * 14 13 12 16 16 N 1.34777 * 119.99724 * 5.00108 * 14 13 12 17 17 C 1.46503 * 119.99698 * 174.91875 * 16 14 13 18 18 C 1.52998 * 109.46902 * 179.97438 * 17 16 14 19 19 C 1.52997 * 109.47078 * 179.97438 * 18 17 16 20 20 C 1.52998 * 109.47078 * 179.97438 * 19 18 17 21 21 C 1.53005 * 109.47185 * 179.97438 * 20 19 18 22 22 C 1.53001 * 109.47331 * 179.97438 * 21 20 19 23 23 O 1.42902 * 109.47000 * 179.97438 * 22 21 20 24 24 C 1.47077 * 118.23467 * 51.45771 * 13 12 11 25 25 C 1.46902 * 110.99796 * 294.30051 * 10 9 7 26 26 H 0.97005 * 120.00001 * 359.97438 * 1 2 3 27 27 H 1.08994 * 109.47306 * 60.00648 * 9 7 2 28 28 H 1.08999 * 109.46849 * 299.99644 * 9 7 2 29 29 H 1.09007 * 109.49598 * 67.28847 * 11 10 9 30 30 H 1.09005 * 109.49388 * 307.21048 * 11 10 9 31 31 H 1.09000 * 109.63258 * 186.45922 * 12 11 10 32 32 H 1.09003 * 109.63025 * 65.88048 * 12 11 10 33 33 H 0.96995 * 120.00372 * 354.90857 * 16 14 13 34 34 H 1.08992 * 109.47112 * 59.99589 * 17 16 14 35 35 H 1.08996 * 109.46871 * 299.99590 * 17 16 14 36 36 H 1.09001 * 109.46881 * 299.99850 * 18 17 16 37 37 H 1.09005 * 109.47332 * 59.99785 * 18 17 16 38 38 H 1.09001 * 109.47273 * 299.99771 * 19 18 17 39 39 H 1.08997 * 109.47512 * 60.00253 * 19 18 17 40 40 H 1.09002 * 109.47334 * 299.99388 * 20 19 18 41 41 H 1.08997 * 109.47647 * 59.99891 * 20 19 18 42 42 H 1.08996 * 109.47021 * 300.00175 * 21 20 19 43 43 H 1.09005 * 109.46870 * 59.99858 * 21 20 19 44 44 H 1.08996 * 109.47494 * 300.00232 * 22 21 20 45 45 H 1.09000 * 109.46641 * 60.00571 * 22 21 20 46 46 H 0.96706 * 113.99593 * 180.02562 * 23 22 21 47 47 H 1.09002 * 109.63307 * 68.25134 * 24 13 12 48 48 H 1.08998 * 109.62919 * 188.83441 * 24 13 12 49 49 H 1.09002 * 109.48960 * 292.70859 * 25 10 9 50 50 H 1.08993 * 109.49482 * 52.78439 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2057 -3.6156 -0.0005 11 6 1.5214 -4.8934 0.2376 12 6 2.5639 -6.0031 0.4103 13 7 3.4616 -5.9861 -0.7546 14 6 3.7120 -7.1122 -1.4515 15 8 4.5257 -7.0999 -2.3548 16 7 3.0601 -8.2520 -1.1472 17 6 3.2486 -9.4467 -1.9739 18 6 2.4020 -10.5921 -1.4153 19 6 2.5983 -11.8396 -2.2790 20 6 1.7522 -12.9852 -1.7200 21 6 1.9479 -14.2326 -2.5841 22 6 1.1024 -15.3785 -2.0247 23 8 1.2848 -16.5433 -2.8322 24 6 4.0838 -4.7089 -1.1351 25 6 2.9768 -3.6489 -1.2505 26 1 -0.4850 0.8401 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6248 -2.5570 0.8897 29 1 0.8796 -5.1263 -0.6122 30 1 0.9162 -4.8191 1.1412 31 1 2.0634 -6.9693 0.4728 32 1 3.1396 -5.8264 1.3189 33 1 2.4664 -8.2813 -0.3807 34 1 4.3000 -9.7337 -1.9633 35 1 2.9407 -9.2325 -2.9973 36 1 2.7103 -10.8061 -0.3919 37 1 1.3504 -10.3053 -1.4255 38 1 2.2897 -11.6253 -3.3022 39 1 3.6497 -12.1267 -2.2691 40 1 2.0612 -13.1995 -0.6969 41 1 0.7006 -12.6986 -1.7294 42 1 1.6387 -14.0181 -3.6070 43 1 2.9995 -14.5195 -2.5750 44 1 1.4120 -15.5928 -1.0019 45 1 0.0508 -15.0918 -2.0336 46 1 0.7769 -17.3109 -2.5356 47 1 4.8028 -4.4101 -0.3722 48 1 4.5885 -4.8190 -2.0949 49 1 2.3148 -3.8991 -2.0796 50 1 3.4271 -2.6721 -1.4262 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868549034.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:37 Heat of formation + Delta-G solvation = -89.369828 kcal Electronic energy + Delta-G solvation = -25661.281776 eV Core-core repulsion = 21915.926572 eV Total energy + Delta-G solvation = -3745.355204 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.20866 -37.96308 -37.65429 -36.46704 -34.64665 -34.35271 -32.44015 -31.79055 -30.59328 -28.47385 -27.37517 -25.45915 -24.01131 -23.05482 -22.12924 -21.66606 -21.54370 -20.65420 -19.18389 -17.92669 -17.74084 -16.65681 -16.45697 -16.14574 -15.85064 -15.14962 -14.96595 -14.70571 -14.50858 -14.27423 -14.05195 -14.01621 -13.74399 -13.50028 -13.34107 -12.99197 -12.70868 -12.34910 -12.19914 -11.99612 -11.69732 -11.52526 -11.44487 -11.28968 -11.21106 -11.12807 -10.95073 -10.82856 -10.74600 -10.62114 -10.50751 -10.46582 -9.98021 -9.84823 -9.27780 -9.13379 -8.48882 -8.31197 -7.32882 -6.06630 -4.08382 2.73477 3.30398 3.32860 3.36802 3.40951 3.64573 3.94163 4.38831 4.40166 4.43843 4.62844 4.64636 4.74203 4.78514 4.92579 4.97446 5.18043 5.21144 5.23324 5.28433 5.36132 5.38474 5.38740 5.43909 5.46825 5.60519 5.65872 5.69142 5.78225 5.83631 5.91481 5.92189 5.97440 6.04332 6.18916 6.41939 6.47119 6.56404 6.70001 7.06986 7.11426 7.21479 7.27791 7.74059 7.99852 8.02844 8.12247 8.47292 8.69864 8.98987 9.56324 11.04165 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.033335 B = 0.001767 C = 0.001710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.763908 B =15839.101800 C =16367.992673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.509 4.509 8 H 0.064 0.936 9 C 0.193 3.807 10 N -0.535 5.535 11 C 0.040 3.960 12 C 0.119 3.881 13 N -0.626 5.626 14 C 0.706 3.294 15 O -0.597 6.597 16 N -0.752 5.752 17 C 0.138 3.862 18 C -0.131 4.131 19 C -0.115 4.115 20 C -0.116 4.116 21 C -0.122 4.122 22 C 0.074 3.926 23 O -0.577 6.577 24 C 0.133 3.867 25 C 0.051 3.949 26 H 0.261 0.739 27 H -0.009 1.009 28 H 0.031 0.969 29 H 0.026 0.974 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.395 0.605 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.045 0.955 45 H 0.045 0.955 46 H 0.379 0.621 47 H 0.070 0.930 48 H 0.088 0.912 49 H 0.024 0.976 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.437 -27.831 -0.485 27.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.726 3.274 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.548 4.548 8 H 0.083 0.917 9 C 0.069 3.931 10 N -0.260 5.260 11 C -0.089 4.089 12 C -0.005 4.005 13 N -0.363 5.363 14 C 0.408 3.592 15 O -0.476 6.476 16 N -0.411 5.411 17 C 0.014 3.986 18 C -0.169 4.169 19 C -0.153 4.153 20 C -0.154 4.154 21 C -0.160 4.160 22 C -0.004 4.004 23 O -0.383 6.383 24 C 0.010 3.990 25 C -0.078 4.078 26 H 0.071 0.929 27 H 0.009 0.991 28 H 0.049 0.951 29 H 0.044 0.956 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.231 0.769 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.226 0.774 47 H 0.088 0.912 48 H 0.106 0.894 49 H 0.042 0.958 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.595 -27.200 -1.104 27.345 hybrid contribution -1.075 0.466 0.159 1.182 sum 1.521 -26.734 -0.946 26.794 Atomic orbital electron populations 1.69957 1.06097 1.26840 1.50885 1.24988 0.94863 0.99364 0.95334 0.86492 0.79815 0.83014 0.78077 1.20713 1.21273 1.19715 1.21147 0.93532 0.89856 1.50261 0.91744 1.19730 0.90009 0.87244 0.96152 1.62081 1.27852 1.02425 1.33614 1.22382 0.94745 0.90994 1.00803 1.21760 0.91884 0.98150 0.88696 1.47419 1.49554 1.07959 1.31370 1.15836 0.81109 0.80255 0.82004 1.90883 1.37863 1.84704 1.34137 1.45280 1.50875 1.10816 1.34081 1.21158 1.00015 0.83099 0.94356 1.21805 1.00537 0.94454 1.00135 1.21468 1.00625 0.93639 0.99607 1.21498 1.00591 0.94001 0.99319 1.21547 1.00720 0.93357 1.00362 1.22232 0.98781 0.85893 0.93491 1.86484 1.72429 1.22529 1.56830 1.21830 0.95349 0.80535 1.01270 1.22455 0.95197 0.99211 0.90984 0.92899 0.99124 0.95066 0.95569 0.90140 0.91312 0.90646 0.76902 0.91722 0.91861 0.91245 0.91211 0.91367 0.91396 0.91674 0.91642 0.91129 0.91162 0.93677 0.93659 0.77385 0.91161 0.89387 0.95753 0.88484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.28 13.29 55.43 0.74 -25.55 16 2 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.51 -13.95 8.41 -34.44 -0.29 -14.24 16 8 H 0.06 1.74 7.13 -52.49 -0.37 1.36 16 9 C 0.19 4.89 4.72 -4.97 -0.02 4.87 16 10 N -0.53 -11.03 4.62 -235.46 -1.09 -12.12 16 11 C 0.04 0.67 5.62 -3.71 -0.02 0.65 16 12 C 0.12 1.58 6.59 -3.61 -0.02 1.56 16 13 N -0.63 -9.74 3.00 -177.92 -0.53 -10.28 16 14 C 0.71 11.21 8.31 -86.92 -0.72 10.49 16 15 O -0.60 -11.60 15.83 5.30 0.08 -11.52 16 16 N -0.75 -8.73 5.47 -65.23 -0.36 -9.09 16 17 C 0.14 1.36 5.68 -4.04 -0.02 1.33 16 18 C -0.13 -0.85 5.33 -26.73 -0.14 -0.99 16 19 C -0.12 -0.67 5.21 -26.73 -0.14 -0.81 16 20 C -0.12 -0.59 5.21 -26.73 -0.14 -0.73 16 21 C -0.12 -0.73 5.58 -26.73 -0.15 -0.88 16 22 C 0.07 0.41 7.05 37.16 0.26 0.67 16 23 O -0.58 -3.92 13.66 -35.23 -0.48 -4.40 16 24 C 0.13 2.24 6.61 -3.37 -0.02 2.22 16 25 C 0.05 0.98 5.47 -3.46 -0.02 0.96 16 26 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 27 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 28 H 0.03 0.84 7.97 -51.93 -0.41 0.42 16 29 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 1.27 7.99 -51.93 -0.41 0.85 16 31 H 0.07 0.68 5.63 -51.93 -0.29 0.39 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.39 3.63 5.97 -40.82 -0.24 3.39 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 45 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 46 H 0.38 0.84 9.12 45.56 0.42 1.26 16 47 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 48 H 0.09 1.50 7.09 -51.93 -0.37 1.14 16 49 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.10 2.00 6.67 -51.93 -0.35 1.65 16 LS Contribution 396.26 15.07 5.97 5.97 Total: -1.00 -34.04 396.26 -10.60 -44.64 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -8.36 Total: -0.53 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: -1.55 Total: 6.56 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: -1.24 Total: -57.03 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.40 Total: -15.91 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.04 -10.60 -44.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868549034.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.734 kcal (2) G-P(sol) polarization free energy of solvation -34.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds