Wall clock time and date at job start Fri Apr 10 2020 18:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99853 * 2 1 4 4 H 1.48493 * 109.47538 * 270.00125 * 3 2 1 5 5 H 1.48504 * 109.47004 * 30.00648 * 3 2 1 6 6 H 1.48507 * 109.47060 * 150.00052 * 3 2 1 7 7 C 1.37876 * 120.00555 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00472 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99140 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.46502 * 180.02562 * 9 7 2 11 11 C 1.46894 * 110.99925 * 170.00033 * 10 9 7 12 12 C 1.53234 * 109.34173 * 187.24962 * 11 10 9 13 13 N 1.47079 * 108.52202 * 306.16803 * 12 11 10 14 14 C 1.34779 * 120.88359 * 231.18325 * 13 12 11 15 15 O 1.21577 * 119.99785 * 184.99536 * 14 13 12 16 16 N 1.34777 * 119.99724 * 5.00108 * 14 13 12 17 17 C 1.46503 * 119.99698 * 174.91875 * 16 14 13 18 18 C 1.52998 * 109.46902 * 179.97438 * 17 16 14 19 19 C 1.52997 * 109.47078 * 179.97438 * 18 17 16 20 20 C 1.52998 * 109.47078 * 179.97438 * 19 18 17 21 21 C 1.53005 * 109.47185 * 179.97438 * 20 19 18 22 22 C 1.53001 * 109.47331 * 179.97438 * 21 20 19 23 23 O 1.42902 * 109.47000 * 179.97438 * 22 21 20 24 24 C 1.47077 * 118.23467 * 51.45771 * 13 12 11 25 25 C 1.46902 * 110.99796 * 294.30051 * 10 9 7 26 26 H 0.97005 * 120.00001 * 359.97438 * 1 2 3 27 27 H 1.08994 * 109.47306 * 60.00648 * 9 7 2 28 28 H 1.08999 * 109.46849 * 299.99644 * 9 7 2 29 29 H 1.09007 * 109.49598 * 67.28847 * 11 10 9 30 30 H 1.09005 * 109.49388 * 307.21048 * 11 10 9 31 31 H 1.09000 * 109.63258 * 186.45922 * 12 11 10 32 32 H 1.09003 * 109.63025 * 65.88048 * 12 11 10 33 33 H 0.96995 * 120.00372 * 354.90857 * 16 14 13 34 34 H 1.08992 * 109.47112 * 59.99589 * 17 16 14 35 35 H 1.08996 * 109.46871 * 299.99590 * 17 16 14 36 36 H 1.09001 * 109.46881 * 299.99850 * 18 17 16 37 37 H 1.09005 * 109.47332 * 59.99785 * 18 17 16 38 38 H 1.09001 * 109.47273 * 299.99771 * 19 18 17 39 39 H 1.08997 * 109.47512 * 60.00253 * 19 18 17 40 40 H 1.09002 * 109.47334 * 299.99388 * 20 19 18 41 41 H 1.08997 * 109.47647 * 59.99891 * 20 19 18 42 42 H 1.08996 * 109.47021 * 300.00175 * 21 20 19 43 43 H 1.09005 * 109.46870 * 59.99858 * 21 20 19 44 44 H 1.08996 * 109.47494 * 300.00232 * 22 21 20 45 45 H 1.09000 * 109.46641 * 60.00571 * 22 21 20 46 46 H 0.96706 * 113.99593 * 180.02562 * 23 22 21 47 47 H 1.09002 * 109.63307 * 68.25134 * 24 13 12 48 48 H 1.08998 * 109.62919 * 188.83441 * 24 13 12 49 49 H 1.09002 * 109.48960 * 292.70859 * 25 10 9 50 50 H 1.08993 * 109.49482 * 52.78439 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2057 -3.6156 -0.0005 11 6 1.5214 -4.8934 0.2376 12 6 2.5639 -6.0031 0.4103 13 7 3.4616 -5.9861 -0.7546 14 6 3.7120 -7.1122 -1.4515 15 8 4.5257 -7.0999 -2.3548 16 7 3.0601 -8.2520 -1.1472 17 6 3.2486 -9.4467 -1.9739 18 6 2.4020 -10.5921 -1.4153 19 6 2.5983 -11.8396 -2.2790 20 6 1.7522 -12.9852 -1.7200 21 6 1.9479 -14.2326 -2.5841 22 6 1.1024 -15.3785 -2.0247 23 8 1.2848 -16.5433 -2.8322 24 6 4.0838 -4.7089 -1.1351 25 6 2.9768 -3.6489 -1.2505 26 1 -0.4850 0.8401 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6248 -2.5570 0.8897 29 1 0.8796 -5.1263 -0.6122 30 1 0.9162 -4.8191 1.1412 31 1 2.0634 -6.9693 0.4728 32 1 3.1396 -5.8264 1.3189 33 1 2.4664 -8.2813 -0.3807 34 1 4.3000 -9.7337 -1.9633 35 1 2.9407 -9.2325 -2.9973 36 1 2.7103 -10.8061 -0.3919 37 1 1.3504 -10.3053 -1.4255 38 1 2.2897 -11.6253 -3.3022 39 1 3.6497 -12.1267 -2.2691 40 1 2.0612 -13.1995 -0.6969 41 1 0.7006 -12.6986 -1.7294 42 1 1.6387 -14.0181 -3.6070 43 1 2.9995 -14.5195 -2.5750 44 1 1.4120 -15.5928 -1.0019 45 1 0.0508 -15.0918 -2.0336 46 1 0.7769 -17.3109 -2.5356 47 1 4.8028 -4.4101 -0.3722 48 1 4.5885 -4.8190 -2.0949 49 1 2.3148 -3.8991 -2.0796 50 1 3.4271 -2.6721 -1.4262 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868549034.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:36 Heat of formation + Delta-G solvation = -115.111733 kcal Electronic energy + Delta-G solvation = -25662.398029 eV Core-core repulsion = 21915.926572 eV Total energy + Delta-G solvation = -3746.471456 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.44992 -39.19038 -38.29982 -37.18237 -35.98876 -35.42397 -34.36372 -32.63015 -31.83138 -30.02043 -28.30029 -27.07512 -24.94655 -24.24771 -23.80751 -22.28988 -22.23569 -21.85382 -20.41199 -19.10791 -18.48822 -18.20974 -17.38938 -17.19971 -16.76046 -16.67642 -16.04390 -15.94009 -15.77224 -15.39915 -15.36346 -15.06838 -14.90464 -14.74979 -14.20998 -14.02306 -13.91966 -13.56343 -13.20450 -13.10526 -13.00959 -12.74131 -12.58422 -12.38115 -12.32286 -12.23888 -12.14317 -12.00348 -11.96531 -11.74322 -11.68600 -11.39782 -11.36483 -11.14734 -10.86847 -10.61537 -10.25839 -9.59027 -9.03819 -8.20352 -6.29975 1.43162 1.43478 1.55211 1.60260 2.08964 2.41150 2.86993 3.12207 3.23122 3.32466 3.90046 3.94789 3.96635 4.05274 4.13902 4.14984 4.19072 4.25789 4.27339 4.43838 4.48880 4.50418 4.56812 4.67835 4.71905 4.73533 4.83647 4.85349 4.92929 4.94969 5.00430 5.02402 5.03897 5.16440 5.17666 5.23206 5.27230 5.44604 5.44898 5.47798 5.53174 5.64492 5.92960 6.04009 6.26137 6.58889 6.85565 6.89107 6.93416 7.39873 7.50612 8.90637 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.033335 B = 0.001767 C = 0.001710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.763908 B =15839.101800 C =16367.992673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.968 3.032 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.524 4.524 8 H 0.065 0.935 9 C 0.208 3.792 10 N -0.537 5.537 11 C 0.037 3.963 12 C 0.127 3.873 13 N -0.630 5.630 14 C 0.702 3.298 15 O -0.637 6.637 16 N -0.735 5.735 17 C 0.136 3.864 18 C -0.118 4.118 19 C -0.115 4.115 20 C -0.109 4.109 21 C -0.124 4.124 22 C 0.071 3.929 23 O -0.602 6.602 24 C 0.145 3.855 25 C 0.057 3.943 26 H 0.264 0.736 27 H -0.042 1.042 28 H 0.012 0.988 29 H 0.018 0.982 30 H 0.091 0.909 31 H 0.111 0.889 32 H 0.087 0.913 33 H 0.409 0.591 34 H 0.056 0.944 35 H 0.049 0.951 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.057 0.943 45 H 0.055 0.945 46 H 0.397 0.603 47 H 0.079 0.921 48 H 0.084 0.916 49 H 0.009 0.991 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.764 -29.146 0.857 29.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.195 4.195 3 Si 0.792 3.208 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.562 4.562 8 H 0.083 0.917 9 C 0.082 3.918 10 N -0.262 5.262 11 C -0.092 4.092 12 C 0.004 3.996 13 N -0.367 5.367 14 C 0.403 3.597 15 O -0.519 6.519 16 N -0.393 5.393 17 C 0.012 3.988 18 C -0.156 4.156 19 C -0.153 4.153 20 C -0.146 4.146 21 C -0.162 4.162 22 C -0.007 4.007 23 O -0.411 6.411 24 C 0.021 3.979 25 C -0.072 4.072 26 H 0.073 0.927 27 H -0.024 1.024 28 H 0.030 0.970 29 H 0.036 0.964 30 H 0.109 0.891 31 H 0.129 0.871 32 H 0.106 0.894 33 H 0.248 0.752 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.073 0.927 46 H 0.246 0.754 47 H 0.097 0.903 48 H 0.102 0.898 49 H 0.027 0.973 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.899 -28.575 0.270 28.723 hybrid contribution -1.214 0.786 -0.286 1.474 sum 1.685 -27.789 -0.016 27.840 Atomic orbital electron populations 1.70078 1.07698 1.27860 1.51807 1.25878 0.95698 1.03108 0.94817 0.85407 0.78675 0.78406 0.78278 1.20133 1.20824 1.18756 1.21477 0.93747 0.91007 1.49986 0.91651 1.19384 0.90025 0.88786 0.93605 1.62001 1.27050 1.03123 1.34052 1.22537 0.95782 0.89996 1.00892 1.21862 0.90872 0.98747 0.88102 1.47435 1.49792 1.07443 1.31984 1.16031 0.81076 0.81081 0.81486 1.90856 1.39749 1.85429 1.35845 1.45193 1.49863 1.09931 1.34363 1.21284 1.00305 0.83382 0.93797 1.21724 1.00260 0.92988 1.00645 1.21454 1.00747 0.93769 0.99319 1.21430 1.00753 0.93009 0.99455 1.21554 1.00307 0.94231 1.00075 1.22306 0.99212 0.85371 0.93778 1.86435 1.73236 1.23693 1.57724 1.21580 0.94258 0.80530 1.01516 1.22363 0.95419 0.99439 0.89964 0.92735 1.02421 0.96959 0.96351 0.89100 0.87117 0.89430 0.75197 0.92603 0.93245 0.89778 0.90294 0.91987 0.91629 0.90671 0.90988 0.92289 0.92075 0.92505 0.92710 0.75374 0.90271 0.89804 0.97310 0.90183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.52 13.29 21.45 0.28 -55.23 16 2 C 0.00 0.18 5.46 84.65 0.46 0.64 16 3 Si 0.97 43.82 29.54 68.60 2.03 45.84 16 4 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 6 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 7 C -0.52 -29.10 8.41 25.60 0.22 -28.88 16 8 H 0.07 3.55 7.13 -2.91 -0.02 3.52 16 9 C 0.21 10.82 4.72 85.56 0.40 11.22 16 10 N -0.54 -22.24 4.62 -898.87 -4.15 -26.39 16 11 C 0.04 1.18 5.62 86.38 0.49 1.67 16 12 C 0.13 3.01 6.59 86.35 0.57 3.58 16 13 N -0.63 -18.56 3.00 -835.07 -2.51 -21.06 16 14 C 0.70 21.24 8.31 179.05 1.49 22.73 16 15 O -0.64 -24.50 15.83 -3.96 -0.06 -24.57 16 16 N -0.73 -15.31 5.47 -478.56 -2.62 -17.92 16 17 C 0.14 2.46 5.68 86.38 0.49 2.95 16 18 C -0.12 -1.21 5.33 30.59 0.16 -1.05 16 19 C -0.11 -1.14 5.21 30.59 0.16 -0.98 16 20 C -0.11 -0.87 5.21 30.60 0.16 -0.71 16 21 C -0.12 -1.35 5.58 30.60 0.17 -1.18 16 22 C 0.07 0.67 7.05 71.98 0.51 1.18 16 23 O -0.60 -7.57 13.66 -148.98 -2.04 -9.60 16 24 C 0.14 4.80 6.61 86.50 0.57 5.37 16 25 C 0.06 2.26 5.47 86.54 0.47 2.73 16 26 H 0.26 14.78 8.31 -92.70 -0.77 14.01 16 27 H -0.04 -2.41 8.12 -2.39 -0.02 -2.43 16 28 H 0.01 0.68 7.97 -2.39 -0.02 0.66 16 29 H 0.02 0.62 8.14 -2.38 -0.02 0.60 16 30 H 0.09 2.73 7.99 -2.38 -0.02 2.71 16 31 H 0.11 1.71 5.63 -2.39 -0.01 1.70 16 32 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.41 5.98 5.97 -92.71 -0.55 5.43 16 34 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 38 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 42 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 44 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 45 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 46 H 0.40 1.32 9.12 -74.05 -0.68 0.64 16 47 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 48 H 0.08 2.87 7.09 -2.39 -0.02 2.85 16 49 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 50 H 0.08 3.38 6.67 -2.39 -0.02 3.37 16 Total: -1.00 -74.82 396.26 -3.06 -77.88 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -0.31 Total: 11.80 kcal Atomic # 6 Polarization: 12.94 SS G_CDS: 6.32 Total: 19.26 kcal Atomic # 7 Polarization: -111.62 SS G_CDS: -8.99 Total: -120.62 kcal Atomic # 8 Polarization: -32.07 SS G_CDS: -2.10 Total: -34.17 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -74.82 -3.06 -77.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868549034.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.233 kcal (2) G-P(sol) polarization free energy of solvation -74.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds