Wall clock time and date at job start Fri Apr 10 2020 18:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46904 * 110.99757 * 2 1 4 4 C 1.46899 * 110.99808 * 123.95100 * 2 1 3 5 5 C 1.53002 * 109.47072 * 170.00263 * 4 2 1 6 6 C 1.53005 * 109.46939 * 180.02562 * 5 4 2 7 7 N 1.46501 * 109.47066 * 180.02562 * 6 5 4 8 8 C 1.46498 * 119.99596 * 270.00394 * 7 6 5 9 9 C 1.50701 * 109.46625 * 269.99666 * 8 7 6 10 10 H 1.08005 * 120.00421 * 359.97438 * 9 8 7 11 11 C 1.37884 * 119.99940 * 180.02562 * 9 8 7 12 12 N 1.31512 * 119.99801 * 180.02562 * 11 9 8 13 13 Si 1.86803 * 119.99959 * 359.97438 * 11 9 8 14 14 H 1.48491 * 109.47043 * 90.00322 * 13 11 9 15 15 H 1.48497 * 109.47079 * 210.00613 * 13 11 9 16 16 H 1.48502 * 109.47138 * 330.00265 * 13 11 9 17 17 C 1.34770 * 120.00246 * 89.99351 * 7 6 5 18 18 O 1.21282 * 120.00373 * 0.02562 * 17 7 6 19 19 C 1.50703 * 120.00146 * 179.97438 * 17 7 6 20 20 N 1.46499 * 109.46938 * 180.02562 * 19 17 7 21 21 C 1.47093 * 125.55889 * 90.00705 * 20 19 17 22 22 C 1.54091 * 103.77776 * 180.02562 * 21 20 19 23 23 O 1.45704 * 104.12991 * 359.92869 * 22 21 20 24 24 C 1.34001 * 125.56070 * 270.01771 * 20 19 17 25 25 O 1.21513 * 123.07229 * 0.03827 * 24 20 19 26 26 H 1.08995 * 109.47204 * 296.04924 * 1 2 3 27 27 H 1.09002 * 109.46804 * 56.04853 * 1 2 3 28 28 H 1.09001 * 109.46941 * 176.04692 * 1 2 3 29 29 H 1.09004 * 109.46786 * 183.94987 * 3 2 1 30 30 H 1.08997 * 109.47153 * 303.94953 * 3 2 1 31 31 H 1.09003 * 109.47386 * 63.95407 * 3 2 1 32 32 H 1.08995 * 109.47362 * 50.00023 * 4 2 1 33 33 H 1.09005 * 109.47208 * 290.00423 * 4 2 1 34 34 H 1.09002 * 109.47169 * 60.00349 * 5 4 2 35 35 H 1.08995 * 109.46986 * 299.99665 * 5 4 2 36 36 H 1.08995 * 109.47463 * 59.99780 * 6 5 4 37 37 H 1.09004 * 109.46829 * 299.99753 * 6 5 4 38 38 H 1.08998 * 109.47783 * 29.99605 * 8 7 6 39 39 H 1.09002 * 109.47033 * 150.00189 * 8 7 6 40 40 H 0.97008 * 119.99362 * 179.97438 * 12 11 9 41 41 H 1.09004 * 109.46863 * 60.00532 * 19 17 7 42 42 H 1.08996 * 109.46918 * 300.00602 * 19 17 7 43 43 H 1.09000 * 110.56724 * 61.43908 * 21 20 19 44 44 H 1.09004 * 110.68940 * 298.64853 * 21 20 19 45 45 H 1.09002 * 110.52360 * 118.62859 * 22 21 20 46 46 H 1.09002 * 110.51975 * 241.22721 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 3.5045 -0.9553 0.9705 6 6 4.0526 -1.7536 2.1551 7 7 5.4976 -1.9344 1.9953 8 6 6.0149 -3.1049 1.2823 9 6 6.2367 -4.2306 2.2594 10 1 6.0149 -4.0882 3.3068 11 6 6.7237 -5.4421 1.8165 12 7 6.9168 -6.4246 2.6691 13 14 7.1079 -5.6883 0.0050 14 1 8.5187 -5.3067 -0.2580 15 1 6.9057 -7.1149 -0.3544 16 1 6.2047 -4.8391 -0.8124 17 6 6.3510 -1.0238 2.5041 18 8 5.9228 -0.0548 3.0946 19 6 7.8375 -1.2101 2.3402 20 7 8.5424 -0.0945 2.9765 21 6 8.9911 -0.0533 4.3767 22 6 9.6614 1.3281 4.5067 23 8 9.5246 1.9161 3.1806 24 6 8.8835 1.0548 2.3778 25 8 8.6346 1.2950 1.2130 26 1 -0.3633 0.4513 0.9232 27 1 -0.3633 0.5740 -0.8525 28 1 -0.3633 -1.0252 -0.0708 29 1 3.0828 1.3433 -0.0708 30 1 1.5898 1.9163 -0.8524 31 1 1.7044 1.8724 0.9233 32 1 1.5090 -1.7406 1.1757 33 1 1.7974 -0.2247 2.0629 34 1 3.9909 0.0194 0.9325 35 1 3.7024 -1.4965 0.0453 36 1 3.5661 -2.7282 2.1927 37 1 3.8546 -1.2126 3.0805 38 1 5.2950 -3.4171 0.5258 39 1 6.9593 -2.8496 0.8018 40 1 7.2591 -7.2770 2.3573 41 1 8.0852 -1.2390 1.2791 42 1 8.1402 -2.1460 2.8098 43 1 9.7110 -0.8482 4.5717 44 1 8.1420 -0.1321 5.0557 45 1 9.1439 1.9356 5.2493 46 1 10.7136 1.2190 4.7697 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874192414.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:39 Heat of formation + Delta-G solvation = -90.276586 kcal Electronic energy + Delta-G solvation = -27220.084765 eV Core-core repulsion = 23338.857146 eV Total energy + Delta-G solvation = -3881.227618 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.37030 -39.29200 -37.62816 -36.94736 -35.56594 -34.95548 -32.93069 -31.81642 -30.14621 -28.12781 -27.92510 -27.60312 -25.62545 -23.59554 -22.75718 -22.65822 -21.13392 -20.62376 -18.66831 -17.42109 -17.15451 -17.02688 -16.65535 -16.34623 -15.79807 -15.42786 -15.21303 -14.77415 -14.70003 -14.36668 -14.03728 -13.93780 -13.86698 -13.58559 -13.33535 -12.76352 -12.56039 -12.40668 -12.38219 -12.26349 -12.04158 -11.81780 -11.73246 -11.51907 -11.37372 -11.29172 -10.87106 -10.75667 -10.62675 -10.43341 -10.35285 -10.23272 -9.74065 -9.64425 -8.82325 -8.59541 -8.37697 -7.86908 -6.30949 -4.34166 2.48528 2.93366 3.13622 3.17445 3.22806 3.25364 3.51789 3.75444 4.04625 4.20105 4.20198 4.66323 4.80808 4.98649 5.02323 5.11801 5.16887 5.20159 5.24580 5.35232 5.38512 5.51845 5.54514 5.60431 5.63610 5.73022 5.74500 5.76540 5.85987 5.91032 5.96859 6.10050 6.31398 6.37825 6.43719 6.54757 6.63303 7.00557 7.03358 7.22874 7.34479 7.47844 7.98944 8.18332 8.30175 8.70322 8.78976 9.28340 10.81059 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.007136 B = 0.005724 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3922.838393 B = 4890.630867 C = 7925.179307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.548 5.548 3 C 0.022 3.978 4 C 0.059 3.941 5 C -0.131 4.131 6 C 0.124 3.876 7 N -0.585 5.585 8 C 0.205 3.795 9 C -0.546 4.546 10 H 0.079 0.921 11 C 0.079 3.921 12 N -0.888 5.888 13 Si 0.868 3.132 14 H -0.272 1.272 15 H -0.282 1.282 16 H -0.262 1.262 17 C 0.502 3.498 18 O -0.561 6.561 19 C 0.130 3.870 20 N -0.609 5.609 21 C 0.067 3.933 22 C 0.044 3.956 23 O -0.332 6.332 24 C 0.648 3.352 25 O -0.525 6.525 26 H 0.023 0.977 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.024 0.976 32 H 0.076 0.924 33 H 0.034 0.966 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.039 0.961 39 H 0.029 0.971 40 H 0.268 0.732 41 H 0.113 0.887 42 H 0.130 0.870 43 H 0.094 0.906 44 H 0.094 0.906 45 H 0.103 0.897 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.937 10.550 1.675 10.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.272 5.272 3 C -0.126 4.126 4 C -0.069 4.069 5 C -0.170 4.170 6 C 0.000 4.000 7 N -0.316 5.316 8 C 0.083 3.917 9 C -0.585 4.585 10 H 0.097 0.903 11 C -0.125 4.125 12 N -0.525 5.525 13 Si 0.695 3.305 14 H -0.197 1.197 15 H -0.208 1.208 16 H -0.186 1.186 17 C 0.289 3.711 18 O -0.441 6.441 19 C 0.006 3.994 20 N -0.356 5.356 21 C -0.056 4.056 22 C -0.031 4.031 23 O -0.242 6.242 24 C 0.401 3.599 25 O -0.409 6.409 26 H 0.041 0.959 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.042 0.958 32 H 0.095 0.905 33 H 0.052 0.948 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.057 0.943 39 H 0.047 0.953 40 H 0.078 0.922 41 H 0.131 0.869 42 H 0.148 0.852 43 H 0.112 0.888 44 H 0.112 0.888 45 H 0.121 0.879 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.984 10.950 0.895 11.164 hybrid contribution -0.129 -0.226 0.018 0.261 sum -2.114 10.724 0.913 10.969 Atomic orbital electron populations 1.22369 0.87618 1.02169 1.00176 1.61976 1.07526 1.14033 1.43657 1.22433 1.01534 0.88633 1.00043 1.22069 0.95856 0.98070 0.90919 1.21964 0.93929 1.01263 0.99819 1.21235 0.80672 1.00391 0.97710 1.47854 1.05497 1.23428 1.54772 1.19892 0.94918 0.83669 0.93183 1.21356 1.45385 0.95560 0.96155 0.90287 1.24866 0.94529 0.95598 0.97521 1.69886 1.44306 1.03761 1.34590 0.86960 0.79653 0.78265 0.85665 1.19711 1.20804 1.18639 1.20818 0.89109 0.82419 0.78762 1.90610 1.79176 1.30665 1.43669 1.21274 0.89279 0.88285 1.00585 1.47522 1.59067 1.17346 1.11622 1.22809 1.00729 0.97807 0.84279 1.24239 1.02922 0.92993 0.82992 1.87327 1.72516 1.41255 1.23133 1.18447 0.77001 0.79297 0.85110 1.91018 1.58879 1.78172 1.12870 0.95876 0.91606 0.91341 0.90832 0.91716 0.95758 0.90545 0.94786 0.91740 0.90952 0.90008 0.90951 0.94308 0.95289 0.92245 0.86882 0.85180 0.88760 0.88770 0.87883 0.87801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.57 60.07 0.57 0.84 16 2 N -0.55 -7.16 5.02 -251.25 -1.26 -8.42 16 3 C 0.02 0.27 9.32 60.07 0.56 0.83 16 4 C 0.06 0.80 4.96 -3.82 -0.02 0.78 16 5 C -0.13 -2.07 5.46 -26.73 -0.15 -2.21 16 6 C 0.12 2.16 5.41 -4.04 -0.02 2.14 16 7 N -0.59 -11.46 2.46 -175.06 -0.43 -11.89 16 8 C 0.20 4.27 4.03 -5.19 -0.02 4.25 16 9 C -0.55 -13.40 9.83 -34.44 -0.34 -13.74 16 10 H 0.08 2.16 8.06 -52.48 -0.42 1.74 16 11 C 0.08 2.02 5.47 -17.82 -0.10 1.92 16 12 N -0.89 -24.52 13.96 55.43 0.77 -23.75 16 13 Si 0.87 19.03 27.47 -169.99 -4.67 14.36 16 14 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 15 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 16 H -0.26 -5.51 6.54 56.52 0.37 -5.14 16 17 C 0.50 9.95 7.74 -10.99 -0.09 9.86 16 18 O -0.56 -12.19 16.01 5.56 0.09 -12.10 16 19 C 0.13 2.25 5.05 -5.19 -0.03 2.23 16 20 N -0.61 -9.80 2.45 -180.13 -0.44 -10.24 16 21 C 0.07 0.75 7.70 -3.15 -0.02 0.73 16 22 C 0.04 0.41 8.22 37.73 0.31 0.72 16 23 O -0.33 -5.03 11.11 -38.59 -0.43 -5.46 16 24 C 0.65 11.77 8.85 53.71 0.48 12.24 16 25 O -0.52 -11.48 17.55 -19.10 -0.34 -11.82 16 26 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 28 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 29 H 0.07 1.00 6.47 -51.93 -0.34 0.66 16 30 H 0.06 0.69 8.12 -51.93 -0.42 0.27 16 31 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.08 0.97 8.06 -51.93 -0.42 0.55 16 33 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 34 H 0.06 1.12 6.55 -51.93 -0.34 0.78 16 35 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16 37 H 0.07 1.29 7.42 -51.93 -0.39 0.90 16 38 H 0.04 0.81 7.13 -51.93 -0.37 0.44 16 39 H 0.03 0.58 5.87 -51.93 -0.30 0.28 16 40 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.11 1.96 7.19 -51.93 -0.37 1.58 16 42 H 0.13 2.16 8.00 -51.93 -0.42 1.75 16 43 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 46 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 379.00 15.07 5.71 5.71 Total: -1.00 -32.94 379.00 -7.45 -40.39 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -7.60 Total: 2.64 kcal Atomic # 6 Polarization: 19.46 SS G_CDS: 1.14 Total: 20.60 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: -1.36 Total: -54.31 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: -0.68 Total: -29.38 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -4.67 Total: 14.36 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.94 -7.45 -40.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874192414.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.887 kcal (2) G-P(sol) polarization free energy of solvation -32.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds