Wall clock time and date at job start Fri Apr 10 2020 18:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46904 * 110.99757 * 2 1 4 4 C 1.46899 * 110.99808 * 123.95100 * 2 1 3 5 5 C 1.53002 * 109.47072 * 170.00263 * 4 2 1 6 6 C 1.53005 * 109.46939 * 180.02562 * 5 4 2 7 7 N 1.46501 * 109.47066 * 180.02562 * 6 5 4 8 8 C 1.46498 * 119.99596 * 270.00394 * 7 6 5 9 9 C 1.50701 * 109.46625 * 269.99666 * 8 7 6 10 10 H 1.08005 * 120.00421 * 359.97438 * 9 8 7 11 11 C 1.37884 * 119.99940 * 180.02562 * 9 8 7 12 12 N 1.31512 * 119.99801 * 180.02562 * 11 9 8 13 13 Si 1.86803 * 119.99959 * 359.97438 * 11 9 8 14 14 H 1.48491 * 109.47043 * 90.00322 * 13 11 9 15 15 H 1.48497 * 109.47079 * 210.00613 * 13 11 9 16 16 H 1.48502 * 109.47138 * 330.00265 * 13 11 9 17 17 C 1.34770 * 120.00246 * 89.99351 * 7 6 5 18 18 O 1.21282 * 120.00373 * 0.02562 * 17 7 6 19 19 C 1.50703 * 120.00146 * 179.97438 * 17 7 6 20 20 N 1.46499 * 109.46938 * 180.02562 * 19 17 7 21 21 C 1.47093 * 125.55889 * 90.00705 * 20 19 17 22 22 C 1.54091 * 103.77776 * 180.02562 * 21 20 19 23 23 O 1.45704 * 104.12991 * 359.92869 * 22 21 20 24 24 C 1.34001 * 125.56070 * 270.01771 * 20 19 17 25 25 O 1.21513 * 123.07229 * 0.03827 * 24 20 19 26 26 H 1.08995 * 109.47204 * 296.04924 * 1 2 3 27 27 H 1.09002 * 109.46804 * 56.04853 * 1 2 3 28 28 H 1.09001 * 109.46941 * 176.04692 * 1 2 3 29 29 H 1.09004 * 109.46786 * 183.94987 * 3 2 1 30 30 H 1.08997 * 109.47153 * 303.94953 * 3 2 1 31 31 H 1.09003 * 109.47386 * 63.95407 * 3 2 1 32 32 H 1.08995 * 109.47362 * 50.00023 * 4 2 1 33 33 H 1.09005 * 109.47208 * 290.00423 * 4 2 1 34 34 H 1.09002 * 109.47169 * 60.00349 * 5 4 2 35 35 H 1.08995 * 109.46986 * 299.99665 * 5 4 2 36 36 H 1.08995 * 109.47463 * 59.99780 * 6 5 4 37 37 H 1.09004 * 109.46829 * 299.99753 * 6 5 4 38 38 H 1.08998 * 109.47783 * 29.99605 * 8 7 6 39 39 H 1.09002 * 109.47033 * 150.00189 * 8 7 6 40 40 H 0.97008 * 119.99362 * 179.97438 * 12 11 9 41 41 H 1.09004 * 109.46863 * 60.00532 * 19 17 7 42 42 H 1.08996 * 109.46918 * 300.00602 * 19 17 7 43 43 H 1.09000 * 110.56724 * 61.43908 * 21 20 19 44 44 H 1.09004 * 110.68940 * 298.64853 * 21 20 19 45 45 H 1.09002 * 110.52360 * 118.62859 * 22 21 20 46 46 H 1.09002 * 110.51975 * 241.22721 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 3.5045 -0.9553 0.9705 6 6 4.0526 -1.7536 2.1551 7 7 5.4976 -1.9344 1.9953 8 6 6.0149 -3.1049 1.2823 9 6 6.2367 -4.2306 2.2594 10 1 6.0149 -4.0882 3.3068 11 6 6.7237 -5.4421 1.8165 12 7 6.9168 -6.4246 2.6691 13 14 7.1079 -5.6883 0.0050 14 1 8.5187 -5.3067 -0.2580 15 1 6.9057 -7.1149 -0.3544 16 1 6.2047 -4.8391 -0.8124 17 6 6.3510 -1.0238 2.5041 18 8 5.9228 -0.0548 3.0946 19 6 7.8375 -1.2101 2.3402 20 7 8.5424 -0.0945 2.9765 21 6 8.9911 -0.0533 4.3767 22 6 9.6614 1.3281 4.5067 23 8 9.5246 1.9161 3.1806 24 6 8.8835 1.0548 2.3778 25 8 8.6346 1.2950 1.2130 26 1 -0.3633 0.4513 0.9232 27 1 -0.3633 0.5740 -0.8525 28 1 -0.3633 -1.0252 -0.0708 29 1 3.0828 1.3433 -0.0708 30 1 1.5898 1.9163 -0.8524 31 1 1.7044 1.8724 0.9233 32 1 1.5090 -1.7406 1.1757 33 1 1.7974 -0.2247 2.0629 34 1 3.9909 0.0194 0.9325 35 1 3.7024 -1.4965 0.0453 36 1 3.5661 -2.7282 2.1927 37 1 3.8546 -1.2126 3.0805 38 1 5.2950 -3.4171 0.5258 39 1 6.9593 -2.8496 0.8018 40 1 7.2591 -7.2770 2.3573 41 1 8.0852 -1.2390 1.2791 42 1 8.1402 -2.1460 2.8098 43 1 9.7110 -0.8482 4.5717 44 1 8.1420 -0.1321 5.0557 45 1 9.1439 1.9356 5.2493 46 1 10.7136 1.2190 4.7697 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874192414.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:38 Heat of formation + Delta-G solvation = -113.408796 kcal Electronic energy + Delta-G solvation = -27221.087852 eV Core-core repulsion = 23338.857146 eV Total energy + Delta-G solvation = -3882.230706 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.58579 -40.83126 -38.70411 -38.32584 -37.05108 -36.33683 -34.71982 -33.27333 -31.22948 -29.83924 -29.21562 -28.53007 -26.87828 -24.60366 -24.45775 -23.95387 -22.38727 -21.80032 -20.17153 -19.05567 -18.69599 -18.37175 -17.88630 -17.71977 -17.12522 -16.59910 -16.54298 -16.09756 -15.96509 -15.77276 -15.39910 -15.06840 -15.06359 -14.85813 -14.75426 -14.34000 -13.89810 -13.77564 -13.57519 -13.32469 -13.26241 -13.06008 -12.95106 -12.90029 -12.64148 -12.50112 -12.40819 -12.24962 -11.99537 -11.87430 -11.70712 -11.67437 -11.56252 -11.13490 -10.76632 -9.93506 -9.50922 -9.36573 -8.28265 -6.35671 1.22089 1.42559 1.47042 1.53942 1.58827 1.60025 2.22496 2.36367 2.60172 3.00296 3.06243 3.34913 3.56311 3.66609 3.92036 3.98989 4.07290 4.18272 4.31080 4.36547 4.38792 4.40440 4.45965 4.48466 4.58912 4.62739 4.67322 4.72839 4.74084 4.76660 4.77637 4.88864 4.95206 4.99269 5.07811 5.17359 5.23518 5.44146 5.64928 6.00136 6.08018 6.17535 6.26869 6.52929 6.70531 6.83472 7.16235 7.32132 8.86920 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.007136 B = 0.005724 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3922.838393 B = 4890.630867 C = 7925.179307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.562 5.562 3 C 0.024 3.976 4 C 0.065 3.935 5 C -0.116 4.116 6 C 0.123 3.877 7 N -0.590 5.590 8 C 0.212 3.788 9 C -0.538 4.538 10 H 0.040 0.960 11 C 0.030 3.970 12 N -0.936 5.936 13 Si 0.928 3.072 14 H -0.261 1.261 15 H -0.287 1.287 16 H -0.244 1.244 17 C 0.497 3.503 18 O -0.584 6.584 19 C 0.134 3.866 20 N -0.611 5.611 21 C 0.060 3.940 22 C 0.043 3.957 23 O -0.343 6.343 24 C 0.643 3.357 25 O -0.575 6.575 26 H 0.028 0.972 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.054 0.946 30 H 0.082 0.918 31 H 0.025 0.975 32 H 0.087 0.913 33 H 0.033 0.967 34 H 0.045 0.955 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.065 0.935 38 H 0.047 0.953 39 H 0.046 0.954 40 H 0.269 0.731 41 H 0.114 0.886 42 H 0.138 0.862 43 H 0.124 0.876 44 H 0.092 0.908 45 H 0.126 0.874 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.791 11.042 1.174 11.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.287 5.287 3 C -0.125 4.125 4 C -0.063 4.063 5 C -0.155 4.155 6 C -0.001 4.001 7 N -0.319 5.319 8 C 0.091 3.909 9 C -0.576 4.576 10 H 0.058 0.942 11 C -0.170 4.170 12 N -0.575 5.575 13 Si 0.752 3.248 14 H -0.185 1.185 15 H -0.213 1.213 16 H -0.167 1.167 17 C 0.284 3.716 18 O -0.466 6.466 19 C 0.009 3.991 20 N -0.356 5.356 21 C -0.062 4.062 22 C -0.030 4.030 23 O -0.253 6.253 24 C 0.398 3.602 25 O -0.463 6.463 26 H 0.046 0.954 27 H 0.097 0.903 28 H 0.094 0.906 29 H 0.073 0.927 30 H 0.100 0.900 31 H 0.044 0.956 32 H 0.106 0.894 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.103 0.897 37 H 0.084 0.916 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.078 0.922 41 H 0.131 0.869 42 H 0.156 0.844 43 H 0.142 0.858 44 H 0.110 0.890 45 H 0.144 0.856 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.841 11.463 0.438 11.618 hybrid contribution -0.203 -0.352 0.343 0.531 sum -2.044 11.112 0.781 11.325 Atomic orbital electron populations 1.22435 0.85791 1.03019 1.01053 1.61973 1.09248 1.14212 1.43223 1.22412 1.00459 0.88700 1.00895 1.21978 0.94176 0.98883 0.91305 1.21781 0.95497 0.99642 0.98554 1.21326 0.79805 1.00699 0.98239 1.47931 1.06434 1.22997 1.54576 1.19743 0.95906 0.82879 0.92405 1.21424 1.44434 0.96743 0.95037 0.94170 1.25615 0.94422 0.95194 1.01787 1.70021 1.46116 1.04486 1.36892 0.85993 0.80286 0.78070 0.80475 1.18542 1.21325 1.16720 1.21275 0.90158 0.81977 0.78165 1.90588 1.79793 1.31507 1.44666 1.21193 0.87782 0.89084 1.01043 1.47613 1.58196 1.16343 1.13474 1.23183 1.01502 1.00070 0.81465 1.24744 1.05686 0.91812 0.80760 1.87295 1.71717 1.41082 1.25170 1.18630 0.76870 0.79813 0.84911 1.90960 1.60905 1.79292 1.15164 0.95362 0.90253 0.90629 0.92698 0.89963 0.95650 0.89447 0.94833 0.93606 0.91468 0.89739 0.91636 0.93541 0.93640 0.92227 0.86857 0.84435 0.85837 0.88988 0.85630 0.83745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 9.57 127.69 1.22 1.69 16 2 N -0.56 -13.93 5.02 -948.82 -4.76 -18.69 16 3 C 0.02 0.56 9.32 127.69 1.19 1.75 16 4 C 0.07 1.70 4.96 86.30 0.43 2.13 16 5 C -0.12 -3.64 5.46 30.60 0.17 -3.47 16 6 C 0.12 4.30 5.41 86.38 0.47 4.76 16 7 N -0.59 -23.09 2.46 -826.15 -2.03 -25.12 16 8 C 0.21 8.67 4.03 85.63 0.35 9.02 16 9 C -0.54 -26.46 9.83 25.60 0.25 -26.20 16 10 H 0.04 2.26 8.06 -2.91 -0.02 2.23 16 11 C 0.03 1.51 5.47 84.66 0.46 1.97 16 12 N -0.94 -52.28 13.96 21.45 0.30 -51.99 16 13 Si 0.93 38.19 27.47 68.60 1.88 40.07 16 14 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 15 H -0.29 -12.03 7.11 99.48 0.71 -11.32 16 16 H -0.24 -9.26 6.54 99.48 0.65 -8.60 16 17 C 0.50 19.77 7.74 87.66 0.68 20.45 16 18 O -0.58 -25.66 16.01 -3.04 -0.05 -25.71 16 19 C 0.13 4.60 5.05 85.63 0.43 5.03 16 20 N -0.61 -19.19 2.45 -955.37 -2.34 -21.53 16 21 C 0.06 1.22 7.70 86.64 0.67 1.88 16 22 C 0.04 0.70 8.22 72.35 0.59 1.29 16 23 O -0.34 -9.95 11.11 -50.08 -0.56 -10.51 16 24 C 0.64 23.23 8.85 129.91 1.15 24.37 16 25 O -0.57 -25.63 17.55 19.63 0.34 -25.28 16 26 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.08 1.28 8.12 -2.39 -0.02 1.26 16 28 H 0.07 1.31 8.12 -2.39 -0.02 1.29 16 29 H 0.05 1.50 6.47 -2.38 -0.02 1.48 16 30 H 0.08 1.64 8.12 -2.39 -0.02 1.62 16 31 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.09 2.09 8.06 -2.39 -0.02 2.07 16 33 H 0.03 0.88 8.12 -2.38 -0.02 0.86 16 34 H 0.05 1.61 6.55 -2.39 -0.02 1.60 16 35 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.08 2.89 8.07 -2.39 -0.02 2.87 16 37 H 0.07 2.37 7.42 -2.38 -0.02 2.36 16 38 H 0.05 1.86 7.13 -2.39 -0.02 1.84 16 39 H 0.05 1.74 5.87 -2.39 -0.01 1.73 16 40 H 0.27 14.12 8.31 -92.70 -0.77 13.35 16 41 H 0.11 3.88 7.19 -2.38 -0.02 3.87 16 42 H 0.14 4.50 8.00 -2.39 -0.02 4.48 16 43 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 45 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.14 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -72.88 379.00 1.75 -71.13 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: 0.90 Total: 22.94 kcal Atomic # 6 Polarization: 36.62 SS G_CDS: 8.06 Total: 44.68 kcal Atomic # 7 Polarization: -108.50 SS G_CDS: -8.83 Total: -117.33 kcal Atomic # 8 Polarization: -61.24 SS G_CDS: -0.26 Total: -61.50 kcal Atomic # 14 Polarization: 38.19 SS G_CDS: 1.88 Total: 40.07 kcal Total: -72.88 1.75 -71.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874192414.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.275 kcal (2) G-P(sol) polarization free energy of solvation -72.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds