Wall clock time and date at job start Fri Apr 10 2020 18:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47249 * 2 1 4 4 H 1.08994 * 109.54643 * 303.85851 * 3 2 1 5 5 C 1.53102 * 109.50511 * 63.96200 * 3 2 1 6 6 O 1.43015 * 109.25834 * 176.77977 * 5 3 2 7 7 C 1.43011 * 113.74071 * 301.33205 * 6 5 3 8 8 C 1.53099 * 109.25572 * 58.67198 * 7 6 5 9 9 N 1.47010 * 109.50826 * 183.74221 * 3 2 1 10 10 C 1.46901 * 110.99522 * 57.67770 * 9 3 2 11 11 C 1.53005 * 109.47051 * 190.90943 * 10 9 3 12 12 N 1.46506 * 109.47137 * 180.02562 * 11 10 9 13 13 C 1.34772 * 119.99700 * 179.97438 * 12 11 10 14 14 O 1.21281 * 120.00140 * 359.97438 * 13 12 11 15 15 C 1.50696 * 119.99953 * 179.97438 * 13 12 11 16 16 H 1.09001 * 109.47099 * 39.99753 * 15 13 12 17 17 N 1.46902 * 109.47336 * 159.99732 * 15 13 12 18 18 C 1.53004 * 109.47438 * 280.00279 * 15 13 12 19 19 C 1.52995 * 109.47270 * 174.99565 * 18 15 13 20 20 C 1.50698 * 109.47273 * 179.97438 * 19 18 15 21 21 H 1.08008 * 119.99733 * 0.02562 * 20 19 18 22 22 C 1.37879 * 120.00557 * 180.02562 * 20 19 18 23 23 N 1.31516 * 119.99427 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00379 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.46881 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46878 * 119.99810 * 24 22 20 27 27 H 1.48497 * 109.46991 * 240.00237 * 24 22 20 28 28 H 1.09004 * 109.46969 * 53.76768 * 1 2 3 29 29 H 1.09002 * 109.47161 * 173.76703 * 1 2 3 30 30 H 1.09003 * 109.47529 * 293.77263 * 1 2 3 31 31 H 1.09001 * 109.47202 * 239.99823 * 2 1 3 32 32 H 1.09000 * 109.46751 * 119.99947 * 2 1 3 33 33 H 1.09007 * 109.50651 * 56.85000 * 5 3 2 34 34 H 1.08995 * 109.54631 * 296.74074 * 5 3 2 35 35 H 1.08994 * 109.50999 * 298.73377 * 7 6 5 36 36 H 1.09000 * 109.50657 * 178.59725 * 7 6 5 37 37 H 1.09007 * 109.50553 * 183.21656 * 8 7 6 38 38 H 1.08995 * 109.54496 * 63.10733 * 8 7 6 39 39 H 1.08998 * 109.47410 * 70.90456 * 10 9 3 40 40 H 1.09003 * 109.47299 * 310.90120 * 10 9 3 41 41 H 1.08998 * 109.47412 * 59.99514 * 11 10 9 42 42 H 1.08996 * 109.46617 * 299.99401 * 11 10 9 43 43 H 0.96996 * 119.99468 * 359.97438 * 12 11 10 44 44 H 1.00904 * 110.99498 * 60.00367 * 17 15 13 45 45 H 1.00899 * 110.99802 * 183.95162 * 17 15 13 46 46 H 1.09004 * 109.46890 * 294.99702 * 18 15 13 47 47 H 1.09000 * 109.47208 * 54.99699 * 18 15 13 48 48 H 1.08991 * 109.47484 * 300.00233 * 19 18 15 49 49 H 1.09010 * 109.47353 * 60.00070 * 19 18 15 50 50 H 0.97000 * 119.99523 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6221 1.9770 -0.8529 5 6 1.6132 2.1356 1.2967 6 8 2.1558 3.4585 1.3251 7 6 3.5828 3.4975 1.2394 8 6 4.0295 2.8183 -0.0579 9 7 3.5074 1.4444 -0.0904 10 6 3.9613 0.7371 -1.2953 11 6 5.4743 0.5215 -1.2205 12 7 5.9271 -0.1833 -2.4224 13 6 7.2321 -0.4830 -2.5763 14 8 8.0315 -0.1689 -1.7200 15 6 7.6979 -1.2085 -3.8122 16 1 7.1676 -0.8213 -4.6823 17 7 9.1417 -1.0016 -3.9866 18 6 7.4111 -2.7041 -3.6644 19 6 7.7687 -3.4232 -4.9666 20 6 7.4868 -4.8963 -4.8208 21 1 7.0917 -5.2812 -3.8921 22 6 7.7333 -5.7530 -5.8727 23 7 8.2149 -5.2844 -7.0032 24 14 7.3833 -7.5790 -5.6921 25 1 6.8494 -7.8485 -4.3327 26 1 6.3824 -7.9939 -6.7077 27 1 8.6390 -8.3458 -5.8923 28 1 -0.3633 0.6074 -0.8290 29 1 -0.3633 -1.0216 -0.1116 30 1 -0.3634 0.4143 0.9405 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.9862 1.5709 2.1512 34 1 0.5254 2.1873 1.3415 35 1 4.0131 2.9724 2.0921 36 1 3.9193 4.5343 1.2419 37 1 5.1185 2.7949 -0.1002 38 1 3.6440 3.3746 -0.9122 39 1 3.7222 1.3313 -2.1772 40 1 3.4596 -0.2283 -1.3607 41 1 5.7134 -0.0727 -0.3385 42 1 5.9760 1.4869 -1.1552 43 1 5.2877 -0.4342 -3.1072 44 1 9.6558 -1.3526 -3.1925 45 1 9.4667 -1.4243 -4.8432 46 1 8.0099 -3.1100 -2.8490 47 1 6.3533 -2.8515 -3.4466 48 1 7.1700 -3.0173 -5.7820 49 1 8.8266 -3.2758 -5.1845 50 1 8.3879 -5.8869 -7.7434 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877432707.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:50 Heat of formation + Delta-G solvation = -94.407607 kcal Electronic energy + Delta-G solvation = -26470.287893 eV Core-core repulsion = 22724.714234 eV Total energy + Delta-G solvation = -3745.573658 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.36385 -39.53123 -36.87224 -35.58207 -34.99711 -33.92706 -32.86106 -30.33425 -29.90847 -29.61753 -27.07803 -25.85261 -25.21168 -23.80176 -22.28552 -21.94091 -20.78835 -20.40190 -19.72422 -17.41193 -17.08504 -16.68961 -16.20937 -16.05396 -15.94010 -15.22579 -15.12608 -14.93528 -14.61742 -14.46888 -14.35621 -14.12153 -13.77226 -13.58680 -13.36741 -12.98283 -12.93562 -12.77781 -12.19705 -12.13304 -12.05581 -11.86309 -11.69485 -11.63209 -11.20218 -11.11314 -11.03422 -10.94308 -10.75592 -10.67914 -10.01124 -9.98836 -9.90833 -9.30238 -9.21450 -8.98816 -8.81216 -8.46187 -8.19769 -6.10550 -4.13565 2.93583 2.94635 3.24658 3.32778 3.36631 3.47337 3.63073 4.29062 4.37825 4.41716 4.45883 4.67239 4.74628 4.77040 4.84237 4.93706 4.99798 5.04481 5.08734 5.17703 5.19030 5.25554 5.25923 5.33230 5.34509 5.46335 5.54479 5.56530 5.62069 5.72096 5.73903 5.75877 5.82682 5.88130 6.26998 6.41888 6.50683 6.54899 6.59950 6.76271 6.85862 7.41719 7.50213 7.59421 7.68713 7.86730 7.90008 8.29306 8.45923 8.92713 9.51488 11.00416 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.016014 B = 0.002433 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.010518 B =11506.754309 C =12935.791656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C 0.050 3.950 4 H 0.051 0.949 5 C 0.069 3.931 6 O -0.387 6.387 7 C 0.063 3.937 8 C 0.013 3.987 9 N -0.529 5.529 10 C 0.038 3.962 11 C 0.126 3.874 12 N -0.736 5.736 13 C 0.527 3.473 14 O -0.537 6.537 15 C 0.075 3.925 16 H 0.096 0.904 17 N -0.831 5.831 18 C -0.137 4.137 19 C 0.024 3.976 20 C -0.523 4.523 21 H 0.055 0.945 22 C 0.058 3.942 23 N -0.893 5.893 24 Si 0.892 3.108 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.283 1.283 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.099 0.901 35 H 0.061 0.939 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.044 0.956 39 H 0.042 0.958 40 H 0.091 0.909 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.401 0.599 44 H 0.346 0.654 45 H 0.354 0.646 46 H 0.055 0.945 47 H 0.056 0.944 48 H 0.018 0.982 49 H 0.018 0.982 50 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.482 15.909 13.764 25.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.058 4.058 4 H 0.069 0.931 5 C -0.008 4.008 6 O -0.305 6.305 7 C -0.014 4.014 8 C -0.115 4.115 9 N -0.254 5.254 10 C -0.090 4.090 11 C 0.002 3.998 12 N -0.390 5.390 13 C 0.313 3.687 14 O -0.413 6.413 15 C -0.040 4.040 16 H 0.114 0.886 17 N -0.363 5.363 18 C -0.177 4.177 19 C -0.013 4.013 20 C -0.561 4.561 21 H 0.073 0.927 22 C -0.144 4.144 23 N -0.532 5.532 24 Si 0.720 3.280 25 H -0.197 1.197 26 H -0.210 1.210 27 H -0.209 1.209 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.117 0.883 35 H 0.080 0.920 36 H 0.117 0.883 37 H 0.110 0.890 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.109 0.891 41 H 0.092 0.908 42 H 0.082 0.918 43 H 0.234 0.766 44 H 0.159 0.841 45 H 0.169 0.831 46 H 0.073 0.927 47 H 0.074 0.926 48 H 0.037 0.963 49 H 0.036 0.964 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.930 16.801 14.635 26.277 hybrid contribution -0.585 -2.073 -1.138 2.437 sum -14.514 14.728 13.496 24.693 Atomic orbital electron populations 1.21811 0.95161 1.02268 1.01908 1.21641 0.95899 0.94906 1.03493 1.22366 0.87421 0.97363 0.98691 0.93082 1.22768 0.98872 0.83200 0.96008 1.87988 1.20695 1.27323 1.94505 1.22682 0.81101 1.01162 0.96425 1.22905 1.01576 0.88611 0.98433 1.62078 1.09146 1.15403 1.38806 1.22379 0.95585 0.99968 0.91025 1.21158 0.92747 0.97415 0.88528 1.45904 1.09228 1.60842 1.22983 1.20875 0.81330 0.77964 0.88496 1.90637 1.53543 1.53141 1.43975 1.21471 0.91808 0.95733 0.95020 0.88628 1.58746 1.01894 1.66789 1.08876 1.22376 1.01296 0.91794 1.02194 1.19109 0.96889 0.94851 0.90493 1.21219 1.43229 0.92537 0.99126 0.92665 1.25021 0.95108 0.98942 0.95304 1.69961 1.44631 1.35131 1.03489 0.86528 0.78016 0.85291 0.78139 1.19745 1.20952 1.20929 0.92611 0.92096 0.92480 0.91009 0.90688 0.92131 0.88327 0.92043 0.88328 0.88957 0.93737 0.93933 0.89115 0.90781 0.91816 0.76550 0.84120 0.83051 0.92663 0.92557 0.96343 0.96387 0.92929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.49 37.16 0.35 -0.51 16 2 C -0.12 -0.83 5.26 -26.73 -0.14 -0.97 16 3 C 0.05 0.39 2.07 -67.60 -0.14 0.25 16 4 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 5 C 0.07 0.52 5.94 37.21 0.22 0.74 16 6 O -0.39 -3.64 10.83 -35.23 -0.38 -4.02 16 7 C 0.06 0.49 7.01 37.21 0.26 0.75 16 8 C 0.01 0.10 5.44 -3.71 -0.02 0.08 16 9 N -0.53 -4.60 4.53 -226.34 -1.03 -5.62 16 10 C 0.04 0.34 4.87 -3.82 -0.02 0.32 16 11 C 0.13 1.41 5.63 -4.04 -0.02 1.39 16 12 N -0.74 -9.23 5.56 -60.29 -0.33 -9.56 16 13 C 0.53 8.65 7.08 -10.99 -0.08 8.57 16 14 O -0.54 -10.55 16.25 5.56 0.09 -10.46 16 15 C 0.07 1.26 3.21 -68.86 -0.22 1.04 16 16 H 0.10 1.51 8.14 -51.93 -0.42 1.08 16 17 N -0.83 -14.34 8.94 -5.65 -0.05 -14.39 16 18 C -0.14 -2.65 4.78 -26.73 -0.13 -2.78 16 19 C 0.02 0.57 4.74 -27.89 -0.13 0.44 16 20 C -0.52 -14.24 9.11 -34.44 -0.31 -14.56 16 21 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 22 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 23 N -0.89 -25.90 13.29 55.43 0.74 -25.17 16 24 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 25 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 27 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.28 6.94 -51.93 -0.36 -0.08 16 31 H 0.07 0.52 5.95 -51.93 -0.31 0.21 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.10 0.61 6.85 -51.93 -0.36 0.25 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.09 0.75 6.42 -51.93 -0.33 0.42 16 38 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.04 0.36 8.11 -51.93 -0.42 -0.06 16 40 H 0.09 0.76 5.65 -51.93 -0.29 0.46 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.06 0.75 6.55 -51.93 -0.34 0.41 16 43 H 0.40 4.15 8.47 -40.82 -0.35 3.81 16 44 H 0.35 6.06 8.58 -39.29 -0.34 5.73 16 45 H 0.35 6.11 7.55 -39.29 -0.30 5.81 16 46 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 47 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 48 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.02 0.45 6.87 -51.92 -0.36 0.09 16 50 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 390.15 15.07 5.88 5.88 Total: -1.00 -31.97 390.15 -9.37 -41.34 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -8.79 Total: 9.61 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -0.48 Total: -3.73 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: -0.67 Total: -54.75 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.29 Total: -14.48 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.97 -9.37 -41.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877432707.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.071 kcal (2) G-P(sol) polarization free energy of solvation -31.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds