Wall clock time and date at job start Fri Apr 10 2020 18:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47249 * 2 1 4 4 H 1.08994 * 109.54643 * 303.85851 * 3 2 1 5 5 C 1.53102 * 109.50511 * 63.96200 * 3 2 1 6 6 O 1.43015 * 109.25834 * 176.77977 * 5 3 2 7 7 C 1.43011 * 113.74071 * 301.33205 * 6 5 3 8 8 C 1.53099 * 109.25572 * 58.67198 * 7 6 5 9 9 N 1.47010 * 109.50826 * 183.74221 * 3 2 1 10 10 C 1.46901 * 110.99522 * 57.67770 * 9 3 2 11 11 C 1.53005 * 109.47051 * 190.90943 * 10 9 3 12 12 N 1.46506 * 109.47137 * 180.02562 * 11 10 9 13 13 C 1.34772 * 119.99700 * 179.97438 * 12 11 10 14 14 O 1.21281 * 120.00140 * 359.97438 * 13 12 11 15 15 C 1.50696 * 119.99953 * 179.97438 * 13 12 11 16 16 H 1.09001 * 109.47099 * 39.99753 * 15 13 12 17 17 N 1.46902 * 109.47336 * 159.99732 * 15 13 12 18 18 C 1.53004 * 109.47438 * 280.00279 * 15 13 12 19 19 C 1.52995 * 109.47270 * 174.99565 * 18 15 13 20 20 C 1.50698 * 109.47273 * 179.97438 * 19 18 15 21 21 H 1.08008 * 119.99733 * 0.02562 * 20 19 18 22 22 C 1.37879 * 120.00557 * 180.02562 * 20 19 18 23 23 N 1.31516 * 119.99427 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00379 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.46881 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46878 * 119.99810 * 24 22 20 27 27 H 1.48497 * 109.46991 * 240.00237 * 24 22 20 28 28 H 1.09004 * 109.46969 * 53.76768 * 1 2 3 29 29 H 1.09002 * 109.47161 * 173.76703 * 1 2 3 30 30 H 1.09003 * 109.47529 * 293.77263 * 1 2 3 31 31 H 1.09001 * 109.47202 * 239.99823 * 2 1 3 32 32 H 1.09000 * 109.46751 * 119.99947 * 2 1 3 33 33 H 1.09007 * 109.50651 * 56.85000 * 5 3 2 34 34 H 1.08995 * 109.54631 * 296.74074 * 5 3 2 35 35 H 1.08994 * 109.50999 * 298.73377 * 7 6 5 36 36 H 1.09000 * 109.50657 * 178.59725 * 7 6 5 37 37 H 1.09007 * 109.50553 * 183.21656 * 8 7 6 38 38 H 1.08995 * 109.54496 * 63.10733 * 8 7 6 39 39 H 1.08998 * 109.47410 * 70.90456 * 10 9 3 40 40 H 1.09003 * 109.47299 * 310.90120 * 10 9 3 41 41 H 1.08998 * 109.47412 * 59.99514 * 11 10 9 42 42 H 1.08996 * 109.46617 * 299.99401 * 11 10 9 43 43 H 0.96996 * 119.99468 * 359.97438 * 12 11 10 44 44 H 1.00904 * 110.99498 * 60.00367 * 17 15 13 45 45 H 1.00899 * 110.99802 * 183.95162 * 17 15 13 46 46 H 1.09004 * 109.46890 * 294.99702 * 18 15 13 47 47 H 1.09000 * 109.47208 * 54.99699 * 18 15 13 48 48 H 1.08991 * 109.47484 * 300.00233 * 19 18 15 49 49 H 1.09010 * 109.47353 * 60.00070 * 19 18 15 50 50 H 0.97000 * 119.99523 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6221 1.9770 -0.8529 5 6 1.6132 2.1356 1.2967 6 8 2.1558 3.4585 1.3251 7 6 3.5828 3.4975 1.2394 8 6 4.0295 2.8183 -0.0579 9 7 3.5074 1.4444 -0.0904 10 6 3.9613 0.7371 -1.2953 11 6 5.4743 0.5215 -1.2205 12 7 5.9271 -0.1833 -2.4224 13 6 7.2321 -0.4830 -2.5763 14 8 8.0315 -0.1689 -1.7200 15 6 7.6979 -1.2085 -3.8122 16 1 7.1676 -0.8213 -4.6823 17 7 9.1417 -1.0016 -3.9866 18 6 7.4111 -2.7041 -3.6644 19 6 7.7687 -3.4232 -4.9666 20 6 7.4868 -4.8963 -4.8208 21 1 7.0917 -5.2812 -3.8921 22 6 7.7333 -5.7530 -5.8727 23 7 8.2149 -5.2844 -7.0032 24 14 7.3833 -7.5790 -5.6921 25 1 6.8494 -7.8485 -4.3327 26 1 6.3824 -7.9939 -6.7077 27 1 8.6390 -8.3458 -5.8923 28 1 -0.3633 0.6074 -0.8290 29 1 -0.3633 -1.0216 -0.1116 30 1 -0.3634 0.4143 0.9405 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.9862 1.5709 2.1512 34 1 0.5254 2.1873 1.3415 35 1 4.0131 2.9724 2.0921 36 1 3.9193 4.5343 1.2419 37 1 5.1185 2.7949 -0.1002 38 1 3.6440 3.3746 -0.9122 39 1 3.7222 1.3313 -2.1772 40 1 3.4596 -0.2283 -1.3607 41 1 5.7134 -0.0727 -0.3385 42 1 5.9760 1.4869 -1.1552 43 1 5.2877 -0.4342 -3.1072 44 1 9.6558 -1.3526 -3.1925 45 1 9.4667 -1.4243 -4.8432 46 1 8.0099 -3.1100 -2.8490 47 1 6.3533 -2.8515 -3.4466 48 1 7.1700 -3.0173 -5.7820 49 1 8.8266 -3.2758 -5.1845 50 1 8.3879 -5.8869 -7.7434 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877432707.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:50 Heat of formation + Delta-G solvation = -119.399171 kcal Electronic energy + Delta-G solvation = -26471.371608 eV Core-core repulsion = 22724.714234 eV Total energy + Delta-G solvation = -3746.657374 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.15214 -40.69693 -37.68087 -37.03705 -35.93814 -34.83945 -34.71142 -31.68419 -31.08298 -30.34634 -28.32638 -27.07633 -25.83032 -25.34852 -23.13261 -22.64757 -22.32623 -21.30287 -20.84244 -18.90244 -18.13652 -17.80219 -17.35725 -17.02052 -16.75023 -16.51697 -16.12584 -16.03610 -15.77406 -15.59226 -15.35619 -15.25621 -14.78389 -14.69637 -14.40821 -14.26792 -13.93190 -13.84038 -13.49558 -13.40059 -12.96962 -12.85613 -12.69209 -12.66735 -12.52827 -12.47325 -12.21537 -11.80827 -11.76322 -11.74034 -11.71265 -11.34560 -11.28359 -10.79189 -10.58068 -10.56430 -10.12435 -9.64604 -9.48253 -8.21699 -6.31756 1.38629 1.40431 1.51988 1.60659 1.96784 2.39897 2.78873 2.90878 3.12206 3.65784 3.72106 3.75947 3.81345 3.87541 3.98225 4.12189 4.13277 4.14188 4.23488 4.26078 4.32491 4.38818 4.49890 4.54721 4.64885 4.67062 4.73473 4.79724 4.82757 4.84167 4.85943 4.93457 4.98986 5.09411 5.18598 5.25303 5.38126 5.38885 5.47324 5.66099 5.81098 5.86727 5.90814 6.07109 6.15220 6.21498 6.47358 6.51495 6.84132 7.22031 7.37454 8.89281 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.016014 B = 0.002433 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.010518 B =11506.754309 C =12935.791656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C 0.053 3.947 4 H 0.047 0.953 5 C 0.067 3.933 6 O -0.404 6.404 7 C 0.062 3.938 8 C 0.013 3.987 9 N -0.538 5.538 10 C 0.048 3.952 11 C 0.130 3.870 12 N -0.718 5.718 13 C 0.528 3.472 14 O -0.572 6.572 15 C 0.081 3.919 16 H 0.111 0.889 17 N -0.831 5.831 18 C -0.120 4.120 19 C 0.029 3.971 20 C -0.543 4.543 21 H 0.055 0.945 22 C 0.004 3.996 23 N -0.927 5.927 24 Si 0.959 3.041 25 H -0.265 1.265 26 H -0.277 1.277 27 H -0.281 1.281 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.113 0.887 35 H 0.060 0.940 36 H 0.113 0.887 37 H 0.091 0.909 38 H 0.042 0.958 39 H 0.050 0.950 40 H 0.098 0.902 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.414 0.586 44 H 0.344 0.656 45 H 0.353 0.647 46 H 0.043 0.957 47 H 0.068 0.932 48 H 0.003 0.997 49 H 0.002 0.998 50 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.022 15.796 14.293 26.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.055 4.055 4 H 0.065 0.935 5 C -0.010 4.010 6 O -0.322 6.322 7 C -0.014 4.014 8 C -0.114 4.114 9 N -0.263 5.263 10 C -0.080 4.080 11 C 0.006 3.994 12 N -0.372 5.372 13 C 0.314 3.686 14 O -0.451 6.451 15 C -0.034 4.034 16 H 0.129 0.871 17 N -0.362 5.362 18 C -0.160 4.160 19 C -0.008 4.008 20 C -0.581 4.581 21 H 0.073 0.927 22 C -0.194 4.194 23 N -0.567 5.567 24 Si 0.784 3.216 25 H -0.189 1.189 26 H -0.203 1.203 27 H -0.206 1.206 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.131 0.869 35 H 0.078 0.922 36 H 0.131 0.869 37 H 0.109 0.891 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.116 0.884 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.250 0.750 44 H 0.156 0.844 45 H 0.168 0.832 46 H 0.062 0.938 47 H 0.086 0.914 48 H 0.022 0.978 49 H 0.020 0.980 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.515 16.697 15.163 27.376 hybrid contribution -0.117 -2.001 -1.292 2.385 sum -15.632 14.696 13.872 25.549 Atomic orbital electron populations 1.21794 0.94159 1.02518 1.02434 1.21610 0.96750 0.94135 1.03092 1.22369 0.86663 0.97873 0.98583 0.93520 1.22879 0.99715 0.82575 0.95829 1.87965 1.21429 1.28293 1.94550 1.22770 0.80533 1.02068 0.96067 1.22904 1.01468 0.88435 0.98638 1.62078 1.09900 1.15668 1.38692 1.22264 0.93633 1.00605 0.91490 1.21166 0.94436 0.96575 0.87180 1.45762 1.08192 1.59594 1.23612 1.20705 0.82241 0.77914 0.87713 1.90627 1.54748 1.54809 1.44871 1.21416 0.91795 0.94112 0.96097 0.87143 1.58765 1.02187 1.66573 1.08707 1.22127 1.01648 0.93091 0.99129 1.18977 0.95554 0.94020 0.92241 1.21650 1.43000 0.94317 0.99108 0.92707 1.25868 0.94943 1.03559 0.95026 1.70069 1.45638 1.36757 1.04253 0.85491 0.77924 0.79760 0.78435 1.18949 1.20264 1.20645 0.92478 0.91905 0.91666 0.91268 0.91168 0.92229 0.86880 0.92156 0.86859 0.89086 0.93942 0.93150 0.88377 0.92213 0.92238 0.74977 0.84350 0.83230 0.93816 0.91381 0.97848 0.97993 0.92751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.49 71.98 0.68 -0.75 16 2 C -0.12 -1.43 5.26 30.59 0.16 -1.27 16 3 C 0.05 0.75 2.07 44.93 0.09 0.84 16 4 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 5 C 0.07 0.93 5.94 72.02 0.43 1.35 16 6 O -0.40 -7.11 10.83 -148.98 -1.61 -8.73 16 7 C 0.06 0.91 7.01 72.02 0.50 1.41 16 8 C 0.01 0.21 5.44 86.31 0.47 0.68 16 9 N -0.54 -8.67 4.53 -870.00 -3.94 -12.61 16 10 C 0.05 0.76 4.87 86.30 0.42 1.18 16 11 C 0.13 2.77 5.63 86.38 0.49 3.26 16 12 N -0.72 -16.90 5.56 -463.06 -2.57 -19.47 16 13 C 0.53 16.80 7.08 87.66 0.62 17.42 16 14 O -0.57 -22.20 16.25 -3.03 -0.05 -22.25 16 15 C 0.08 2.66 3.21 44.17 0.14 2.80 16 16 H 0.11 3.31 8.14 -2.39 -0.02 3.29 16 17 N -0.83 -28.50 8.94 -171.80 -1.54 -30.04 16 18 C -0.12 -4.58 4.78 30.59 0.15 -4.43 16 19 C 0.03 1.41 4.74 29.85 0.14 1.55 16 20 C -0.54 -29.48 9.11 25.60 0.23 -29.24 16 21 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 22 C 0.00 0.24 5.46 84.65 0.46 0.71 16 23 N -0.93 -53.98 13.29 21.45 0.28 -53.70 16 24 Si 0.96 43.02 29.54 68.60 2.03 45.05 16 25 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 26 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 27 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 28 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.06 0.51 6.94 -2.39 -0.02 0.49 16 31 H 0.07 0.87 5.95 -2.39 -0.01 0.86 16 32 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.06 0.83 8.14 -2.38 -0.02 0.82 16 34 H 0.11 1.20 6.85 -2.39 -0.02 1.18 16 35 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.09 1.41 6.42 -2.38 -0.02 1.40 16 38 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.05 0.74 8.11 -2.39 -0.02 0.72 16 40 H 0.10 1.44 5.65 -2.39 -0.01 1.42 16 41 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.06 1.35 6.55 -2.39 -0.02 1.33 16 43 H 0.41 7.65 8.47 -92.71 -0.79 6.86 16 44 H 0.34 12.09 8.58 -89.69 -0.77 11.32 16 45 H 0.35 12.23 7.55 -89.69 -0.68 11.55 16 46 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 47 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 48 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 49 H 0.00 0.09 6.87 -2.38 -0.02 0.07 16 50 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -67.28 390.15 -3.69 -70.97 By element: Atomic # 1 Polarization: 36.54 SS G_CDS: -1.28 Total: 35.26 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: 4.99 Total: -4.49 kcal Atomic # 7 Polarization: -108.05 SS G_CDS: -7.76 Total: -115.81 kcal Atomic # 8 Polarization: -29.32 SS G_CDS: -1.66 Total: -30.98 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -67.28 -3.69 -70.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877432707.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.431 kcal (2) G-P(sol) polarization free energy of solvation -67.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds