Wall clock time and date at job start Fri Apr 10 2020 18:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86796 * 120.00000 * 2 1 4 4 H 1.48499 * 109.47347 * 274.99779 * 3 2 1 5 5 H 1.48505 * 109.46911 * 35.00041 * 3 2 1 6 6 H 1.48507 * 109.47128 * 154.99615 * 3 2 1 7 7 C 1.37888 * 120.00134 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00049 * 184.96061 * 7 2 1 9 9 C 1.50700 * 119.99721 * 4.96565 * 7 2 1 10 10 O 1.42899 * 110.27283 * 296.92314 * 9 7 2 11 11 C 1.54596 * 110.30716 * 59.12158 * 9 7 2 12 12 C 1.54942 * 102.92033 * 140.87107 * 11 9 7 13 13 N 1.48530 * 103.22511 * 322.58668 * 12 11 9 14 14 C 1.46902 * 110.99921 * 159.71980 * 13 12 11 15 15 C 1.53003 * 109.47303 * 52.60240 * 14 13 12 16 16 H 1.09000 * 109.46648 * 305.00340 * 15 14 13 17 17 O 1.42899 * 109.46878 * 64.99798 * 15 14 13 18 18 C 1.52997 * 109.47413 * 185.00042 * 15 14 13 19 19 C 1.53000 * 109.47224 * 175.00105 * 18 15 14 20 20 O 1.42899 * 109.47494 * 64.99744 * 19 18 15 21 21 C 1.53000 * 109.46859 * 304.99875 * 19 18 15 22 22 C 1.52999 * 109.47229 * 180.02562 * 21 19 18 23 23 C 1.52996 * 109.47224 * 59.99591 * 22 21 19 24 24 C 1.53000 * 109.47352 * 300.00334 * 23 22 21 25 25 C 1.53000 * 109.47002 * 185.00319 * 19 18 15 26 26 C 1.47899 * 105.82444 * 39.20663 * 13 12 11 27 27 H 0.96995 * 120.00286 * 0.02562 * 1 2 3 28 28 H 0.96700 * 113.99633 * 57.92186 * 10 9 7 29 29 H 1.09000 * 110.72093 * 259.22601 * 11 9 7 30 30 H 1.08992 * 110.72773 * 22.33848 * 11 9 7 31 31 H 1.08992 * 110.66933 * 204.14692 * 12 11 9 32 32 H 1.09001 * 110.66418 * 81.01422 * 12 11 9 33 33 H 1.08993 * 109.47407 * 292.59984 * 14 13 12 34 34 H 1.09006 * 109.47069 * 172.60024 * 14 13 12 35 35 H 0.96696 * 114.00271 * 60.00370 * 17 15 14 36 36 H 1.08999 * 109.47056 * 295.00151 * 18 15 14 37 37 H 1.09004 * 109.46890 * 54.99448 * 18 15 14 38 38 H 0.96688 * 114.00031 * 179.97438 * 20 19 18 39 39 H 1.09008 * 109.47211 * 299.99961 * 21 19 18 40 40 H 1.08998 * 109.47243 * 59.99863 * 21 19 18 41 41 H 1.08999 * 109.46584 * 300.00114 * 22 21 19 42 42 H 1.08997 * 109.47340 * 179.97438 * 22 21 19 43 43 H 1.09001 * 109.47015 * 180.02562 * 23 22 21 44 44 H 1.09008 * 109.47051 * 60.00540 * 23 22 21 45 45 H 1.08995 * 109.46954 * 300.00028 * 24 23 22 46 46 H 1.09003 * 109.47193 * 179.97438 * 24 23 22 47 47 H 1.09007 * 109.46769 * 299.99541 * 25 19 18 48 48 H 1.08995 * 109.47595 * 59.99478 * 25 19 18 49 49 H 1.08997 * 109.92095 * 94.02113 * 26 13 12 50 50 H 1.09003 * 109.91449 * 215.12011 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3910 2.1074 -1.3947 5 1 1.5033 2.6198 0.8031 6 1 3.5955 1.4119 0.5918 7 6 2.0045 -1.1941 0.0005 8 1 3.0815 -1.1958 0.0814 9 6 1.2553 -2.4968 -0.1119 10 8 0.3948 -2.6720 1.0155 11 6 0.4386 -2.5345 -1.4240 12 6 0.6072 -4.0010 -1.8949 13 7 2.0126 -4.3152 -1.5313 14 6 2.2239 -5.7668 -1.4520 15 6 1.7406 -6.4240 -2.7465 16 1 0.7030 -6.1451 -2.9300 17 8 2.5524 -5.9827 -3.8365 18 6 1.8447 -7.9448 -2.6160 19 6 1.2464 -8.6055 -3.8596 20 8 2.0343 -8.2694 -5.0034 21 6 -0.1859 -8.1071 -4.0627 22 6 -0.7844 -8.7682 -5.3059 23 6 -0.7942 -10.2870 -5.1213 24 6 0.6380 -10.7853 -4.9182 25 6 1.2366 -10.1243 -3.6755 26 6 2.2426 -3.6737 -0.2186 27 1 -0.4850 0.8400 -0.0004 28 1 -0.2491 -1.9602 1.1331 29 1 -0.6105 -2.3093 -1.2319 30 1 0.8527 -1.8415 -2.1561 31 1 0.4621 -4.0781 -2.9724 32 1 -0.0832 -4.6571 -1.3647 33 1 1.6635 -6.1701 -0.6086 34 1 3.2855 -5.9725 -1.3145 35 1 3.4904 -6.1973 -3.7405 36 1 2.8923 -8.2306 -2.5212 37 1 1.2975 -8.2719 -1.7319 38 1 1.7128 -8.6552 -5.8296 39 1 -0.7870 -8.3636 -3.1902 40 1 -0.1789 -7.0251 -4.1938 41 1 -0.1834 -8.5122 -6.1785 42 1 -1.8049 -8.4136 -5.4503 43 1 -1.2202 -10.7579 -6.0072 44 1 -1.3952 -10.5431 -4.2487 45 1 1.2389 -10.5293 -5.7908 46 1 0.6310 -11.8673 -4.7862 47 1 2.2570 -10.4793 -3.5308 48 1 0.6356 -10.3807 -2.8031 49 1 2.0555 -4.3891 0.5822 50 1 3.2679 -3.3088 -0.1583 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878761564.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:53 Heat of formation + Delta-G solvation = -165.813312 kcal Electronic energy + Delta-G solvation = -28065.424366 eV Core-core repulsion = 24284.461573 eV Total energy + Delta-G solvation = -3780.962793 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.209 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.19974 -38.56157 -36.78485 -34.83450 -34.38480 -32.23747 -32.06716 -31.13164 -30.26738 -28.26624 -27.76695 -25.50709 -23.88684 -23.22960 -22.07397 -21.07634 -19.92182 -19.66227 -19.26773 -17.33652 -17.03147 -16.32730 -15.79175 -15.13084 -14.95868 -14.81523 -14.76681 -14.52293 -14.15346 -13.86405 -13.84483 -13.67093 -13.09202 -13.02818 -12.58076 -12.41129 -12.07446 -11.94719 -11.75737 -11.62845 -11.56735 -11.43045 -11.33498 -11.13252 -10.96282 -10.90087 -10.88486 -10.55919 -10.48979 -10.41605 -10.27886 -10.23035 -9.92874 -9.70976 -9.37764 -9.04369 -8.51698 -8.05545 -7.66916 -6.15101 -4.20539 3.27795 3.34801 3.38955 4.12458 4.21072 4.37284 4.40174 4.49666 4.57544 4.79314 4.83934 4.92976 5.01647 5.10753 5.15507 5.18629 5.26335 5.32937 5.36772 5.43351 5.53052 5.59917 5.70251 5.73109 5.76654 5.79246 5.80847 5.91061 5.92852 5.99851 6.06576 6.12650 6.16008 6.18109 6.29819 6.41252 6.46622 6.59161 6.99244 7.13715 7.37017 7.59106 7.65182 7.73564 7.78652 7.90194 8.10910 8.22670 8.81389 9.44883 9.55977 10.92577 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.029674 B = 0.002804 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.354678 B = 9985.029346 C =10122.290575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.068 3.932 3 Si 0.900 3.100 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.527 4.527 8 H 0.061 0.939 9 C 0.242 3.758 10 O -0.596 6.596 11 C -0.116 4.116 12 C 0.032 3.968 13 N -0.502 5.502 14 C 0.013 3.987 15 C 0.112 3.888 16 H 0.099 0.901 17 O -0.531 6.531 18 C -0.141 4.141 19 C 0.144 3.856 20 O -0.540 6.540 21 C -0.151 4.151 22 C -0.123 4.123 23 C -0.123 4.123 24 C -0.123 4.123 25 C -0.147 4.147 26 C 0.053 3.947 27 H 0.266 0.734 28 H 0.382 0.618 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.028 0.972 33 H 0.034 0.966 34 H 0.070 0.930 35 H 0.366 0.634 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.365 0.635 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.063 0.937 47 H 0.068 0.932 48 H 0.069 0.931 49 H 0.032 0.968 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.723 -20.588 -9.147 22.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.134 4.134 3 Si 0.727 3.273 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.566 4.566 8 H 0.080 0.920 9 C 0.203 3.797 10 O -0.406 6.406 11 C -0.154 4.154 12 C -0.095 4.095 13 N -0.226 5.226 14 C -0.117 4.117 15 C 0.052 3.948 16 H 0.117 0.883 17 O -0.335 6.335 18 C -0.179 4.179 19 C 0.103 3.897 20 O -0.346 6.346 21 C -0.188 4.188 22 C -0.160 4.160 23 C -0.161 4.161 24 C -0.160 4.160 25 C -0.184 4.184 26 C -0.074 4.074 27 H 0.075 0.925 28 H 0.232 0.768 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.046 0.954 33 H 0.052 0.948 34 H 0.088 0.912 35 H 0.212 0.788 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.212 0.788 39 H 0.086 0.914 40 H 0.098 0.902 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.082 0.918 47 H 0.087 0.913 48 H 0.087 0.913 49 H 0.051 0.949 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.382 -20.272 -9.225 22.275 hybrid contribution -0.335 0.464 0.485 0.750 sum -0.717 -19.808 -8.740 21.662 Atomic orbital electron populations 1.69682 1.05949 1.27305 1.50903 1.25016 0.94982 0.99438 0.93959 0.86458 0.79920 0.82847 0.78044 1.20554 1.21227 1.19802 1.21697 0.93805 0.90687 1.50382 0.92048 1.19370 0.86243 0.91316 0.82809 1.86088 1.51968 1.51807 1.50708 1.22927 1.00620 0.92228 0.99665 1.23286 0.88320 0.98585 0.99350 1.64806 1.23125 1.07058 1.27579 1.23055 1.01037 0.90598 0.96968 1.21951 0.96347 0.90077 0.86384 0.88313 1.86623 1.21687 1.81913 1.43252 1.22343 1.02181 0.97235 0.96134 1.20978 0.89900 0.91938 0.86849 1.86678 1.54738 1.76147 1.17015 1.22316 0.96194 1.01813 0.98516 1.21546 1.01303 0.94957 0.98227 1.21601 0.96764 0.95935 1.01756 1.21538 0.96217 1.00066 0.98188 1.22241 1.01540 0.96045 0.98618 1.22891 1.00470 0.96049 0.88024 0.92453 0.76751 0.91825 0.91397 0.91424 0.95354 0.94764 0.91160 0.78772 0.90870 0.90165 0.78781 0.91361 0.90205 0.91825 0.91593 0.91998 0.91895 0.91897 0.91793 0.91342 0.91250 0.94933 0.90477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.45 10.89 55.43 0.60 -23.85 16 2 C 0.07 1.83 5.22 -17.82 -0.09 1.74 16 3 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.53 -14.55 8.12 -34.44 -0.28 -14.83 16 8 H 0.06 1.70 7.36 -52.49 -0.39 1.31 16 9 C 0.24 6.20 0.99 -90.41 -0.09 6.11 16 10 O -0.60 -15.85 12.94 -35.23 -0.46 -16.31 16 11 C -0.12 -2.79 5.32 -24.87 -0.13 -2.92 16 12 C 0.03 0.66 5.09 -1.90 -0.01 0.65 16 13 N -0.50 -10.04 5.34 -230.45 -1.23 -11.27 16 14 C 0.01 0.20 4.66 -3.82 -0.02 0.18 16 15 C 0.11 1.54 2.36 -26.73 -0.06 1.47 16 16 H 0.10 1.47 4.44 -51.93 -0.23 1.24 16 17 O -0.53 -8.02 11.74 -54.84 -0.64 -8.66 16 18 C -0.14 -1.51 4.27 -26.73 -0.11 -1.63 16 19 C 0.14 1.40 0.79 -90.62 -0.07 1.33 16 20 O -0.54 -5.87 11.35 -54.84 -0.62 -6.49 16 21 C -0.15 -1.48 4.46 -26.73 -0.12 -1.60 16 22 C -0.12 -0.99 5.67 -26.73 -0.15 -1.14 16 23 C -0.12 -0.84 5.92 -26.73 -0.16 -1.00 16 24 C -0.12 -0.83 5.67 -26.75 -0.15 -0.98 16 25 C -0.15 -1.18 4.94 -26.75 -0.13 -1.31 16 26 C 0.05 1.20 6.16 -2.76 -0.02 1.19 16 27 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 28 H 0.38 10.27 7.29 45.56 0.33 10.61 16 29 H 0.06 1.58 7.99 -51.93 -0.41 1.16 16 30 H 0.07 1.76 7.85 -51.93 -0.41 1.35 16 31 H 0.07 1.32 7.56 -51.93 -0.39 0.93 16 32 H 0.03 0.56 8.01 -51.93 -0.42 0.14 16 33 H 0.03 0.54 7.81 -51.93 -0.41 0.14 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.37 4.66 9.05 45.56 0.41 5.07 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.36 3.08 5.69 45.56 0.26 3.34 16 39 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 40 H 0.08 0.95 6.23 -51.93 -0.32 0.63 16 41 H 0.06 0.49 6.78 -51.93 -0.35 0.14 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 45 H 0.06 0.40 6.78 -51.93 -0.35 0.05 16 46 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 49 H 0.03 0.72 7.39 -51.93 -0.38 0.34 16 50 H 0.08 1.76 7.40 -51.93 -0.38 1.38 16 LS Contribution 370.15 15.07 5.58 5.58 Total: -1.00 -29.59 370.15 -10.20 -39.79 By element: Atomic # 1 Polarization: 24.58 SS G_CDS: -6.81 Total: 17.77 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: -1.60 Total: -12.74 kcal Atomic # 7 Polarization: -34.49 SS G_CDS: -0.63 Total: -35.11 kcal Atomic # 8 Polarization: -29.74 SS G_CDS: -1.72 Total: -31.47 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.59 -10.20 -39.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878761564.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.024 kcal (2) G-P(sol) polarization free energy of solvation -29.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds