Wall clock time and date at job start Fri Apr 10 2020 18:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86796 * 120.00000 * 2 1 4 4 H 1.48499 * 109.47347 * 274.99779 * 3 2 1 5 5 H 1.48505 * 109.46911 * 35.00041 * 3 2 1 6 6 H 1.48507 * 109.47128 * 154.99615 * 3 2 1 7 7 C 1.37888 * 120.00134 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00049 * 184.96061 * 7 2 1 9 9 C 1.50700 * 119.99721 * 4.96565 * 7 2 1 10 10 O 1.42899 * 110.27283 * 296.92314 * 9 7 2 11 11 C 1.54596 * 110.30716 * 59.12158 * 9 7 2 12 12 C 1.54942 * 102.92033 * 140.87107 * 11 9 7 13 13 N 1.48530 * 103.22511 * 322.58668 * 12 11 9 14 14 C 1.46902 * 110.99921 * 159.71980 * 13 12 11 15 15 C 1.53003 * 109.47303 * 52.60240 * 14 13 12 16 16 H 1.09000 * 109.46648 * 305.00340 * 15 14 13 17 17 O 1.42899 * 109.46878 * 64.99798 * 15 14 13 18 18 C 1.52997 * 109.47413 * 185.00042 * 15 14 13 19 19 C 1.53000 * 109.47224 * 175.00105 * 18 15 14 20 20 O 1.42899 * 109.47494 * 64.99744 * 19 18 15 21 21 C 1.53000 * 109.46859 * 304.99875 * 19 18 15 22 22 C 1.52999 * 109.47229 * 180.02562 * 21 19 18 23 23 C 1.52996 * 109.47224 * 59.99591 * 22 21 19 24 24 C 1.53000 * 109.47352 * 300.00334 * 23 22 21 25 25 C 1.53000 * 109.47002 * 185.00319 * 19 18 15 26 26 C 1.47899 * 105.82444 * 39.20663 * 13 12 11 27 27 H 0.96995 * 120.00286 * 0.02562 * 1 2 3 28 28 H 0.96700 * 113.99633 * 57.92186 * 10 9 7 29 29 H 1.09000 * 110.72093 * 259.22601 * 11 9 7 30 30 H 1.08992 * 110.72773 * 22.33848 * 11 9 7 31 31 H 1.08992 * 110.66933 * 204.14692 * 12 11 9 32 32 H 1.09001 * 110.66418 * 81.01422 * 12 11 9 33 33 H 1.08993 * 109.47407 * 292.59984 * 14 13 12 34 34 H 1.09006 * 109.47069 * 172.60024 * 14 13 12 35 35 H 0.96696 * 114.00271 * 60.00370 * 17 15 14 36 36 H 1.08999 * 109.47056 * 295.00151 * 18 15 14 37 37 H 1.09004 * 109.46890 * 54.99448 * 18 15 14 38 38 H 0.96688 * 114.00031 * 179.97438 * 20 19 18 39 39 H 1.09008 * 109.47211 * 299.99961 * 21 19 18 40 40 H 1.08998 * 109.47243 * 59.99863 * 21 19 18 41 41 H 1.08999 * 109.46584 * 300.00114 * 22 21 19 42 42 H 1.08997 * 109.47340 * 179.97438 * 22 21 19 43 43 H 1.09001 * 109.47015 * 180.02562 * 23 22 21 44 44 H 1.09008 * 109.47051 * 60.00540 * 23 22 21 45 45 H 1.08995 * 109.46954 * 300.00028 * 24 23 22 46 46 H 1.09003 * 109.47193 * 179.97438 * 24 23 22 47 47 H 1.09007 * 109.46769 * 299.99541 * 25 19 18 48 48 H 1.08995 * 109.47595 * 59.99478 * 25 19 18 49 49 H 1.08997 * 109.92095 * 94.02113 * 26 13 12 50 50 H 1.09003 * 109.91449 * 215.12011 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3910 2.1074 -1.3947 5 1 1.5033 2.6198 0.8031 6 1 3.5955 1.4119 0.5918 7 6 2.0045 -1.1941 0.0005 8 1 3.0815 -1.1958 0.0814 9 6 1.2553 -2.4968 -0.1119 10 8 0.3948 -2.6720 1.0155 11 6 0.4386 -2.5345 -1.4240 12 6 0.6072 -4.0010 -1.8949 13 7 2.0126 -4.3152 -1.5313 14 6 2.2239 -5.7668 -1.4520 15 6 1.7406 -6.4240 -2.7465 16 1 0.7030 -6.1451 -2.9300 17 8 2.5524 -5.9827 -3.8365 18 6 1.8447 -7.9448 -2.6160 19 6 1.2464 -8.6055 -3.8596 20 8 2.0343 -8.2694 -5.0034 21 6 -0.1859 -8.1071 -4.0627 22 6 -0.7844 -8.7682 -5.3059 23 6 -0.7942 -10.2870 -5.1213 24 6 0.6380 -10.7853 -4.9182 25 6 1.2366 -10.1243 -3.6755 26 6 2.2426 -3.6737 -0.2186 27 1 -0.4850 0.8400 -0.0004 28 1 -0.2491 -1.9602 1.1331 29 1 -0.6105 -2.3093 -1.2319 30 1 0.8527 -1.8415 -2.1561 31 1 0.4621 -4.0781 -2.9724 32 1 -0.0832 -4.6571 -1.3647 33 1 1.6635 -6.1701 -0.6086 34 1 3.2855 -5.9725 -1.3145 35 1 3.4904 -6.1973 -3.7405 36 1 2.8923 -8.2306 -2.5212 37 1 1.2975 -8.2719 -1.7319 38 1 1.7128 -8.6552 -5.8296 39 1 -0.7870 -8.3636 -3.1902 40 1 -0.1789 -7.0251 -4.1938 41 1 -0.1834 -8.5122 -6.1785 42 1 -1.8049 -8.4136 -5.4503 43 1 -1.2202 -10.7579 -6.0072 44 1 -1.3952 -10.5431 -4.2487 45 1 1.2389 -10.5293 -5.7908 46 1 0.6310 -11.8673 -4.7862 47 1 2.2570 -10.4793 -3.5308 48 1 0.6356 -10.3807 -2.8031 49 1 2.0555 -4.3891 0.5822 50 1 3.2679 -3.3088 -0.1583 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878761564.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:52 Heat of formation + Delta-G solvation = -188.953747 kcal Electronic energy + Delta-G solvation = -28066.427811 eV Core-core repulsion = 24284.461573 eV Total energy + Delta-G solvation = -3781.966238 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.209 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.02845 -40.13633 -38.11220 -36.20979 -35.48652 -34.17642 -33.20539 -31.79759 -31.74451 -29.95756 -29.13081 -26.97587 -25.47223 -24.10852 -23.12849 -22.00912 -21.41663 -21.12409 -20.36660 -19.10600 -18.06377 -17.57300 -17.02750 -16.75246 -16.44027 -16.18704 -15.76162 -15.67384 -15.60999 -15.07993 -14.90626 -14.55864 -14.46242 -14.08537 -13.93809 -13.79952 -13.38417 -13.16877 -13.09606 -13.04201 -12.87193 -12.70996 -12.51688 -12.40059 -12.30479 -12.23614 -12.17225 -12.06180 -11.90898 -11.68800 -11.50231 -11.45482 -11.15703 -11.05763 -10.64553 -10.54434 -10.26807 -10.10640 -9.28176 -8.22121 -6.35458 1.39986 1.41987 1.51915 2.39212 2.93718 3.08698 3.38582 3.55514 3.69812 3.84012 3.88376 3.90456 3.98093 4.12879 4.17132 4.22594 4.32979 4.33926 4.38393 4.46608 4.53753 4.55027 4.58673 4.66839 4.68314 4.73573 4.77622 4.81517 4.84761 4.93524 5.07416 5.13146 5.17662 5.18309 5.21943 5.24049 5.27309 5.37954 5.42152 5.48405 5.53784 5.58854 5.76028 5.98083 6.15576 6.25050 6.68951 6.97259 7.07560 7.33163 7.43096 8.84004 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.029674 B = 0.002804 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.354678 B = 9985.029346 C =10122.290575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.027 3.973 3 Si 0.960 3.040 4 H -0.277 1.277 5 H -0.279 1.279 6 H -0.272 1.272 7 C -0.555 4.555 8 H 0.052 0.948 9 C 0.227 3.773 10 O -0.602 6.602 11 C -0.109 4.109 12 C 0.048 3.952 13 N -0.508 5.508 14 C 0.012 3.988 15 C 0.121 3.879 16 H 0.087 0.913 17 O -0.549 6.549 18 C -0.136 4.136 19 C 0.145 3.855 20 O -0.556 6.556 21 C -0.150 4.150 22 C -0.122 4.122 23 C -0.119 4.119 24 C -0.121 4.121 25 C -0.142 4.142 26 C 0.061 3.939 27 H 0.269 0.731 28 H 0.377 0.623 29 H 0.049 0.951 30 H 0.043 0.957 31 H 0.077 0.923 32 H 0.037 0.963 33 H 0.039 0.961 34 H 0.084 0.916 35 H 0.376 0.624 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.374 0.626 39 H 0.070 0.930 40 H 0.054 0.946 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.062 0.938 45 H 0.067 0.933 46 H 0.074 0.926 47 H 0.068 0.932 48 H 0.073 0.927 49 H 0.034 0.966 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.356 -22.171 -9.762 24.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.173 4.173 3 Si 0.785 3.215 4 H -0.202 1.202 5 H -0.204 1.204 6 H -0.197 1.197 7 C -0.593 4.593 8 H 0.070 0.930 9 C 0.187 3.813 10 O -0.410 6.410 11 C -0.147 4.147 12 C -0.080 4.080 13 N -0.232 5.232 14 C -0.117 4.117 15 C 0.061 3.939 16 H 0.105 0.895 17 O -0.354 6.354 18 C -0.174 4.174 19 C 0.105 3.895 20 O -0.363 6.363 21 C -0.188 4.188 22 C -0.159 4.159 23 C -0.156 4.156 24 C -0.158 4.158 25 C -0.180 4.180 26 C -0.067 4.067 27 H 0.078 0.922 28 H 0.226 0.774 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.096 0.904 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.103 0.897 35 H 0.223 0.777 36 H 0.098 0.902 37 H 0.110 0.890 38 H 0.223 0.777 39 H 0.088 0.912 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.091 0.909 44 H 0.081 0.919 45 H 0.085 0.915 46 H 0.093 0.907 47 H 0.087 0.913 48 H 0.092 0.908 49 H 0.053 0.947 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.012 -21.878 -9.848 23.992 hybrid contribution -0.456 0.965 0.672 1.261 sum -0.467 -20.913 -9.176 22.842 Atomic orbital electron populations 1.69758 1.06807 1.28127 1.50559 1.25708 0.95864 1.02298 0.93430 0.85520 0.78733 0.79131 0.78068 1.20232 1.20446 1.19684 1.21938 0.93646 0.92213 1.51547 0.92960 1.19613 0.86733 0.92051 0.82872 1.86079 1.52004 1.51539 1.51427 1.22715 0.99175 0.94255 0.98597 1.23113 0.88956 0.96047 0.99878 1.64770 1.22598 1.09933 1.25934 1.23202 1.02162 0.87880 0.98429 1.21850 0.95343 0.91896 0.84806 0.89532 1.86594 1.22614 1.82381 1.43769 1.22297 1.02995 0.94813 0.97301 1.20973 0.89372 0.93073 0.86117 1.86644 1.55232 1.76665 1.17801 1.22287 0.96669 1.00356 0.99507 1.21538 1.01092 0.95878 0.97395 1.21572 0.96986 0.94811 1.02274 1.21538 0.95987 1.00559 0.97717 1.22183 1.01813 0.94496 0.99480 1.22718 0.99214 0.95267 0.89490 0.92179 0.77356 0.93264 0.93830 0.90430 0.94503 0.94306 0.89748 0.77676 0.90194 0.89035 0.77707 0.91160 0.92719 0.91662 0.91699 0.90907 0.91930 0.91458 0.90727 0.91307 0.90818 0.94735 0.91122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.16 10.89 21.45 0.23 -49.92 16 2 C 0.03 1.48 5.22 84.66 0.44 1.93 16 3 Si 0.96 43.60 29.54 68.60 2.03 45.62 16 4 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 5 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 6 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 7 C -0.56 -31.12 8.12 25.60 0.21 -30.91 16 8 H 0.05 2.94 7.36 -2.91 -0.02 2.92 16 9 C 0.23 11.77 0.99 -10.66 -0.01 11.76 16 10 O -0.60 -32.45 12.94 -148.98 -1.93 -34.38 16 11 C -0.11 -5.33 5.32 31.80 0.17 -5.16 16 12 C 0.05 1.93 5.09 86.65 0.44 2.37 16 13 N -0.51 -20.01 5.34 -883.02 -4.72 -24.73 16 14 C 0.01 0.35 4.66 86.30 0.40 0.76 16 15 C 0.12 3.15 2.36 30.59 0.07 3.22 16 16 H 0.09 2.50 4.44 -2.39 -0.01 2.49 16 17 O -0.55 -15.93 11.74 -130.23 -1.53 -17.46 16 18 C -0.14 -2.66 4.27 30.59 0.13 -2.53 16 19 C 0.15 2.57 0.79 -10.79 -0.01 2.56 16 20 O -0.56 -11.21 11.35 -130.23 -1.48 -12.69 16 21 C -0.15 -2.78 4.46 30.59 0.14 -2.64 16 22 C -0.12 -1.78 5.67 30.59 0.17 -1.60 16 23 C -0.12 -1.36 5.92 30.59 0.18 -1.18 16 24 C -0.12 -1.32 5.67 30.58 0.17 -1.15 16 25 C -0.14 -1.93 4.94 30.58 0.15 -1.78 16 26 C 0.06 2.76 6.16 86.45 0.53 3.29 16 27 H 0.27 14.03 8.31 -92.71 -0.77 13.25 16 28 H 0.38 20.73 7.29 -74.06 -0.54 20.19 16 29 H 0.05 2.50 7.99 -2.39 -0.02 2.48 16 30 H 0.04 2.30 7.85 -2.39 -0.02 2.28 16 31 H 0.08 3.00 7.56 -2.39 -0.02 2.98 16 32 H 0.04 1.43 8.01 -2.39 -0.02 1.41 16 33 H 0.04 1.16 7.81 -2.39 -0.02 1.14 16 34 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 35 H 0.38 9.04 9.05 -74.06 -0.67 8.37 16 36 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 38 H 0.37 5.72 5.69 -74.07 -0.42 5.30 16 39 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 40 H 0.05 1.29 6.23 -2.39 -0.01 1.27 16 41 H 0.06 0.92 6.78 -2.39 -0.02 0.91 16 42 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 45 H 0.07 0.69 6.78 -2.39 -0.02 0.67 16 46 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 48 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 49 H 0.03 1.52 7.39 -2.39 -0.02 1.50 16 50 H 0.07 3.25 7.40 -2.39 -0.02 3.23 16 Total: -1.00 -62.69 370.15 -4.88 -67.57 By element: Atomic # 1 Polarization: 47.74 SS G_CDS: -0.68 Total: 47.06 kcal Atomic # 6 Polarization: -24.26 SS G_CDS: 3.19 Total: -21.07 kcal Atomic # 7 Polarization: -70.17 SS G_CDS: -4.49 Total: -74.66 kcal Atomic # 8 Polarization: -59.59 SS G_CDS: -4.94 Total: -64.52 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Total: -62.69 -4.88 -67.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878761564.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.384 kcal (2) G-P(sol) polarization free energy of solvation -62.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds